Gcaud2491.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2491.t1
Unique Name	Gcaud2491.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1112_length_13701_cov_5.226598	contig	NODE_1112_length_13701_cov_5.226598:11145..12839 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	5.57e-18
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2491	Gcaud2491	Gracilaria caudata M_176_S67 male	gene	NODE_1112_length_13701_cov_5.226598 11145..12839 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2491.t1.stop1	Gcaud2491.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1112_length_13701_cov_5.226598 11145..11147 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2491.t1.CDS1	Gcaud2491.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1112_length_13701_cov_5.226598 11145..12839 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2491.t1.exon1	Gcaud2491.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1112_length_13701_cov_5.226598 11145..12839 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2491.t1.start1	Gcaud2491.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1112_length_13701_cov_5.226598 12837..12839 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2491.t1	Gcaud2491.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1112_length_13701_cov_5.226598 11145..12839 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1112_length_13701_cov_5.226598:11145..12839-
coding sequence from alignment at NODE_1112_length_13701_cov_5.226598:11145..12839-

mRNA sequence

>Gcaud2491.t1 ID=Gcaud2491.t1|Name=Gcaud2491.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=565bp
MASLLAAGSLYADLRRALRRAGRRIAVRRAKLPTRLSVSHAVLLLVLLVF
TLTLMSSSSSLLRSAPLFVPPRAPLVPSPSEPRMQLFSVHPSLNDTAQFI
PDVAPALPPQLRAHVDRIVRDAASVHTALHSLYDVPPMVVRCMTHRVAYR
LLWKLVLADMLAHPHAHLLYARARVLFVHTQNGLGNRLRALASGLAMARA
TRRVPVIIWENDPHLAAPFEEVLTAHHHSSTLHGVLYDDLIIMDRFLAWN
EAAERNASWHAVSYMEKDGGDSEPGILMRFQMPEAHDASLQNWLQYAQQY
PQLRNGTAQLTISKPPAVDLQQRKRHGTRLIHTTKHVYFKSAYVAKTEPA
SMSLRSVVNHELTLLTPSHGVMQIVQQLNPNELRRAIGVHIRSRSLARDN
VDVRTRCEYTRVGARVTDYWRSRSSLKVFVKKMQWAVKRQKSVKFFVASD
DVEVVQALRKRFGDERILHIERSCDDRLEGCVKYAMADLICLSKTRKIYG
SNWSSFSEAAGRLGGKNVYLSGQHFGKLKGFQRRWDKFQARFYWTVDRVM
SLWPSWLALPWNRC*

spliced messenger RNA

>Gcaud2491.t1 ID=Gcaud2491.t1|Name=Gcaud2491.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at NODE_1112_length_13701_cov_5.226598:11145..12839- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGCTTCTCGCGGCCGGCTCTCTGTACGCCGACCTCCGTCGCGC
GCTGCGCAGAGCGGGGAGACGCATCGCCGTTAGAAGAGCAAAGCTACCGA
CGCGGCTCTCTGTGTCGCACGCCGTATTGCTGCTGGTGTTGCTCGTGTTT
ACTCTCACTTTAATGTCCTCTTCCTCGTCGCTGCTGCGCTCCGCGCCGCT
GTTTGTTCCGCCCCGTGCGCCGCTGGTGCCGTCTCCGTCAGAGCCGCGCA
TGCAGCTCTTTTCTGTTCACCCGTCTTTGAACGACACCGCTCAGTTTATT
CCTGATGTCGCCCCGGCGTTGCCGCCGCAGCTGCGAGCTCACGTGGATCG
AATCGTACGCGACGCCGCGTCGGTGCATACTGCGTTGCACTCGCTGTACG
ATGTGCCGCCCATGGTCGTGCGTTGCATGACACACCGCGTCGCCTACCGG
CTGCTTTGGAAGCTCGTGCTGGCCGATATGCTCGCGCACCCTCACGCACA
CCTTTTGTACGCGCGCGCGCGGGTCTTGTTCGTGCACACGCAAAACGGCT
TGGGCAACCGTCTGCGCGCGCTCGCATCCGGCCTGGCCATGGCCCGGGCC
ACCAGACGTGTACCCGTCATCATCTGGGAGAACGATCCGCATCTTGCCGC
CCCGTTCGAGGAGGTGCTGACCGCGCATCACCATTCCTCTACATTGCACG
GCGTACTGTACGACGATCTCATTATTATGGATCGCTTCTTAGCATGGAAC
GAAGCCGCCGAACGAAATGCTTCGTGGCATGCCGTCAGCTATATGGAGAA
GGACGGTGGCGATTCTGAGCCAGGTATTTTGATGCGCTTTCAGATGCCTG
AGGCTCACGACGCGTCGCTACAGAATTGGTTGCAGTACGCACAACAATAC
CCACAGCTACGTAACGGAACCGCTCAACTTACAATATCGAAACCACCGGC
TGTCGATCTGCAGCAACGCAAGCGCCATGGCACTCGTTTAATTCATACCA
CCAAACATGTGTACTTCAAGAGCGCCTATGTGGCTAAAACGGAACCCGCC
AGCATGTCTTTGCGCTCTGTTGTGAACCACGAGCTTACGCTGTTGACTCC
TAGCCATGGCGTGATGCAAATCGTGCAACAGTTGAATCCTAATGAGTTGC
GCCGAGCAATTGGCGTGCATATTCGATCGAGAAGCCTCGCTAGGGACAAC
GTTGATGTTCGCACGCGCTGTGAGTATACACGCGTTGGCGCGCGTGTCAC
CGACTACTGGAGATCTCGCTCCAGCCTCAAGGTGTTTGTCAAGAAAATGC
AGTGGGCTGTTAAACGTCAAAAGAGTGTCAAGTTTTTCGTGGCTTCAGAT
GATGTTGAGGTGGTGCAAGCTCTGAGGAAGCGCTTTGGCGATGAACGCAT
TCTGCACATTGAGCGAAGCTGCGATGATCGCTTGGAGGGATGCGTCAAGT
ACGCAATGGCCGATCTTATTTGCTTGTCGAAGACGAGGAAGATTTATGGG
TCCAACTGGAGCAGTTTTTCGGAGGCTGCAGGGCGTCTTGGTGGAAAGAA
TGTGTATCTTAGTGGCCAACATTTCGGAAAGCTCAAGGGATTTCAACGAC
GCTGGGACAAGTTCCAGGCTAGGTTTTATTGGACGGTGGACCGCGTCATG
AGTTTGTGGCCATCGTGGTTGGCACTACCATGGAATCGGTGCTAA

protein sequence of Gcaud2491.t1

>Gcaud2491.t1 ID=Gcaud2491.t1|Name=Gcaud2491.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=565bp
MASLLAAGSLYADLRRALRRAGRRIAVRRAKLPTRLSVSHAVLLLVLLVF
TLTLMSSSSSLLRSAPLFVPPRAPLVPSPSEPRMQLFSVHPSLNDTAQFI
PDVAPALPPQLRAHVDRIVRDAASVHTALHSLYDVPPMVVRCMTHRVAYR
LLWKLVLADMLAHPHAHLLYARARVLFVHTQNGLGNRLRALASGLAMARA
TRRVPVIIWENDPHLAAPFEEVLTAHHHSSTLHGVLYDDLIIMDRFLAWN
EAAERNASWHAVSYMEKDGGDSEPGILMRFQMPEAHDASLQNWLQYAQQY
PQLRNGTAQLTISKPPAVDLQQRKRHGTRLIHTTKHVYFKSAYVAKTEPA
SMSLRSVVNHELTLLTPSHGVMQIVQQLNPNELRRAIGVHIRSRSLARDN
VDVRTRCEYTRVGARVTDYWRSRSSLKVFVKKMQWAVKRQKSVKFFVASD
DVEVVQALRKRFGDERILHIERSCDDRLEGCVKYAMADLICLSKTRKIYG
SNWSSFSEAAGRLGGKNVYLSGQHFGKLKGFQRRWDKFQARFYWTVDRVM
SLWPSWLALPWNRC*

mRNA from alignment at NODE_1112_length_13701_cov_5.226598:11145..12839-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2491.t1 ID=Gcaud2491.t1|Name=Gcaud2491.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at NODE_1112_length_13701_cov_5.226598:11145..12839- (Gracilaria caudata M_176_S67 male)
ATGGCGTCGCTTCTCGCGGCCGGCTCTCTGTACGCCGACCTCCGTCGCGC
GCTGCGCAGAGCGGGGAGACGCATCGCCGTTAGAAGAGCAAAGCTACCGA
CGCGGCTCTCTGTGTCGCACGCCGTATTGCTGCTGGTGTTGCTCGTGTTT
ACTCTCACTTTAATGTCCTCTTCCTCGTCGCTGCTGCGCTCCGCGCCGCT
GTTTGTTCCGCCCCGTGCGCCGCTGGTGCCGTCTCCGTCAGAGCCGCGCA
TGCAGCTCTTTTCTGTTCACCCGTCTTTGAACGACACCGCTCAGTTTATT
CCTGATGTCGCCCCGGCGTTGCCGCCGCAGCTGCGAGCTCACGTGGATCG
AATCGTACGCGACGCCGCGTCGGTGCATACTGCGTTGCACTCGCTGTACG
ATGTGCCGCCCATGGTCGTGCGTTGCATGACACACCGCGTCGCCTACCGG
CTGCTTTGGAAGCTCGTGCTGGCCGATATGCTCGCGCACCCTCACGCACA
CCTTTTGTACGCGCGCGCGCGGGTCTTGTTCGTGCACACGCAAAACGGCT
TGGGCAACCGTCTGCGCGCGCTCGCATCCGGCCTGGCCATGGCCCGGGCC
ACCAGACGTGTACCCGTCATCATCTGGGAGAACGATCCGCATCTTGCCGC
CCCGTTCGAGGAGGTGCTGACCGCGCATCACCATTCCTCTACATTGCACG
GCGTACTGTACGACGATCTCATTATTATGGATCGCTTCTTAGCATGGAAC
GAAGCCGCCGAACGAAATGCTTCGTGGCATGCCGTCAGCTATATGGAGAA
GGACGGTGGCGATTCTGAGCCAGGTATTTTGATGCGCTTTCAGATGCCTG
AGGCTCACGACGCGTCGCTACAGAATTGGTTGCAGTACGCACAACAATAC
CCACAGCTACGTAACGGAACCGCTCAACTTACAATATCGAAACCACCGGC
TGTCGATCTGCAGCAACGCAAGCGCCATGGCACTCGTTTAATTCATACCA
CCAAACATGTGTACTTCAAGAGCGCCTATGTGGCTAAAACGGAACCCGCC
AGCATGTCTTTGCGCTCTGTTGTGAACCACGAGCTTACGCTGTTGACTCC
TAGCCATGGCGTGATGCAAATCGTGCAACAGTTGAATCCTAATGAGTTGC
GCCGAGCAATTGGCGTGCATATTCGATCGAGAAGCCTCGCTAGGGACAAC
GTTGATGTTCGCACGCGCTGTGAGTATACACGCGTTGGCGCGCGTGTCAC
CGACTACTGGAGATCTCGCTCCAGCCTCAAGGTGTTTGTCAAGAAAATGC
AGTGGGCTGTTAAACGTCAAAAGAGTGTCAAGTTTTTCGTGGCTTCAGAT
GATGTTGAGGTGGTGCAAGCTCTGAGGAAGCGCTTTGGCGATGAACGCAT
TCTGCACATTGAGCGAAGCTGCGATGATCGCTTGGAGGGATGCGTCAAGT
ACGCAATGGCCGATCTTATTTGCTTGTCGAAGACGAGGAAGATTTATGGG
TCCAACTGGAGCAGTTTTTCGGAGGCTGCAGGGCGTCTTGGTGGAAAGAA
TGTGTATCTTAGTGGCCAACATTTCGGAAAGCTCAAGGGATTTCAACGAC
GCTGGGACAAGTTCCAGGCTAGGTTTTATTGGACGGTGGACCGCGTCATG
AGTTTGTGGCCATCGTGGTTGGCACTACCATGGAATCGGTGCTAA

Coding sequence (CDS) from alignment at NODE_1112_length_13701_cov_5.226598:11145..12839-

>Gcaud2491.t1 ID=Gcaud2491.t1|Name=Gcaud2491.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1695bp|location=Sequence derived from alignment at NODE_1112_length_13701_cov_5.226598:11145..12839- (Gracilaria caudata M_176_S67 male)
ATGGCGTCGCTTCTCGCGGCCGGCTCTCTGTACGCCGACCTCCGTCGCGC
GCTGCGCAGAGCGGGGAGACGCATCGCCGTTAGAAGAGCAAAGCTACCGA
CGCGGCTCTCTGTGTCGCACGCCGTATTGCTGCTGGTGTTGCTCGTGTTT
ACTCTCACTTTAATGTCCTCTTCCTCGTCGCTGCTGCGCTCCGCGCCGCT
GTTTGTTCCGCCCCGTGCGCCGCTGGTGCCGTCTCCGTCAGAGCCGCGCA
TGCAGCTCTTTTCTGTTCACCCGTCTTTGAACGACACCGCTCAGTTTATT
CCTGATGTCGCCCCGGCGTTGCCGCCGCAGCTGCGAGCTCACGTGGATCG
AATCGTACGCGACGCCGCGTCGGTGCATACTGCGTTGCACTCGCTGTACG
ATGTGCCGCCCATGGTCGTGCGTTGCATGACACACCGCGTCGCCTACCGG
CTGCTTTGGAAGCTCGTGCTGGCCGATATGCTCGCGCACCCTCACGCACA
CCTTTTGTACGCGCGCGCGCGGGTCTTGTTCGTGCACACGCAAAACGGCT
TGGGCAACCGTCTGCGCGCGCTCGCATCCGGCCTGGCCATGGCCCGGGCC
ACCAGACGTGTACCCGTCATCATCTGGGAGAACGATCCGCATCTTGCCGC
CCCGTTCGAGGAGGTGCTGACCGCGCATCACCATTCCTCTACATTGCACG
GCGTACTGTACGACGATCTCATTATTATGGATCGCTTCTTAGCATGGAAC
GAAGCCGCCGAACGAAATGCTTCGTGGCATGCCGTCAGCTATATGGAGAA
GGACGGTGGCGATTCTGAGCCAGGTATTTTGATGCGCTTTCAGATGCCTG
AGGCTCACGACGCGTCGCTACAGAATTGGTTGCAGTACGCACAACAATAC
CCACAGCTACGTAACGGAACCGCTCAACTTACAATATCGAAACCACCGGC
TGTCGATCTGCAGCAACGCAAGCGCCATGGCACTCGTTTAATTCATACCA
CCAAACATGTGTACTTCAAGAGCGCCTATGTGGCTAAAACGGAACCCGCC
AGCATGTCTTTGCGCTCTGTTGTGAACCACGAGCTTACGCTGTTGACTCC
TAGCCATGGCGTGATGCAAATCGTGCAACAGTTGAATCCTAATGAGTTGC
GCCGAGCAATTGGCGTGCATATTCGATCGAGAAGCCTCGCTAGGGACAAC
GTTGATGTTCGCACGCGCTGTGAGTATACACGCGTTGGCGCGCGTGTCAC
CGACTACTGGAGATCTCGCTCCAGCCTCAAGGTGTTTGTCAAGAAAATGC
AGTGGGCTGTTAAACGTCAAAAGAGTGTCAAGTTTTTCGTGGCTTCAGAT
GATGTTGAGGTGGTGCAAGCTCTGAGGAAGCGCTTTGGCGATGAACGCAT
TCTGCACATTGAGCGAAGCTGCGATGATCGCTTGGAGGGATGCGTCAAGT
ACGCAATGGCCGATCTTATTTGCTTGTCGAAGACGAGGAAGATTTATGGG
TCCAACTGGAGCAGTTTTTCGGAGGCTGCAGGGCGTCTTGGTGGAAAGAA
TGTGTATCTTAGTGGCCAACATTTCGGAAAGCTCAAGGGATTTCAACGAC
GCTGGGACAAGTTCCAGGCTAGGTTTTATTGGACGGTGGACCGCGTCATG
AGTTTGTGGCCATCGTGGTTGGCACTACCATGGAATCGGTGCTAA