Gcaud2489.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2489.t1
Unique Name	Gcaud2489.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	349

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1112_length_13701_cov_5.226598	contig	NODE_1112_length_13701_cov_5.226598:7548..8594 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LT73
PFAMs	Aminotran_4
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00006,RC00036
KEGG ko	ko:K00826
KEGG Reaction	R01090,R01214,R02199,R10991
KEGG Pathway	ko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG Module	M00019,M00036,M00119,M00570
Evalue	1.65e-140
EggNOG OGs	COG0115@1\|root,KOG0975@2759\|Eukaryota
EC	2.6.1.42
Description	branched-chain-amino-acid transaminase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2489	Gcaud2489	Gracilaria caudata M_176_S67 male	gene	NODE_1112_length_13701_cov_5.226598 7548..8594 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2489.t1.start1	Gcaud2489.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1112_length_13701_cov_5.226598 7548..7550 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2489.t1.CDS1	Gcaud2489.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1112_length_13701_cov_5.226598 7548..8594 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2489.t1.exon1	Gcaud2489.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1112_length_13701_cov_5.226598 7548..8594 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2489.t1.stop1	Gcaud2489.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1112_length_13701_cov_5.226598 8592..8594 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2489.t1	Gcaud2489.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1112_length_13701_cov_5.226598 7548..8594 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1112_length_13701_cov_5.226598:7548..8594+
coding sequence from alignment at NODE_1112_length_13701_cov_5.226598:7548..8594+

mRNA sequence

>Gcaud2489.t1 ID=Gcaud2489.t1|Name=Gcaud2489.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=349bp
MVQSEVKQATPKLDWKNLGFQYIQTACYVKCVWKDGEWSSPSIETEPFIR
MHIASTALHYGQSCFEGLKAFRGQDDVVRIFRADENAKRLHASAERLVIP
PVPEELFLYVVHMAVRENIDYVPPYGSGGSLYIRPLLFGSGAKIGLQSSD
EFTFLVMVVPVGDYYKGGLSPVTAIVMQNFDRAAPKGVGHVKVSGNYAAD
LMPNLMGKSAGYPINLYLDAQNRRTIEEFGTSNFFGLKGSTYVTPNSASV
LPSITNNTLMQLAKDEGMVVEQREIDIDELEEFEEVGACGTAVVITAVSR
VVHGSKLYEIGNDPDRVGERLLRLYNKVRAIQYGEQLDLHGWAQPLLM*

spliced messenger RNA

>Gcaud2489.t1 ID=Gcaud2489.t1|Name=Gcaud2489.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_1112_length_13701_cov_5.226598:7548..8594+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACAATCAGAGGTGAAGCAAGCAACCCCAAAGCTGGACTGGAAAAA
CCTCGGATTTCAATACATTCAAACCGCATGCTATGTGAAATGTGTGTGGA
AAGATGGAGAATGGTCTTCGCCCTCTATTGAAACTGAACCGTTTATACGT
ATGCACATTGCTAGCACGGCTTTGCACTACGGACAAAGTTGTTTTGAAGG
GCTAAAGGCGTTTCGTGGACAAGATGATGTGGTAAGAATCTTTCGAGCCG
ATGAAAATGCAAAACGATTGCACGCTTCAGCAGAACGACTTGTGATTCCG
CCCGTTCCTGAAGAGTTATTTTTGTATGTTGTTCACATGGCAGTTCGCGA
GAATATTGACTACGTGCCACCGTATGGAAGTGGAGGATCATTGTATATCC
GACCATTACTTTTCGGGAGTGGCGCGAAAATTGGGTTACAATCATCTGAT
GAATTCACGTTTCTCGTAATGGTGGTGCCTGTCGGGGATTACTACAAGGG
TGGATTATCACCGGTGACGGCTATTGTGATGCAGAATTTCGATCGTGCAG
CTCCAAAGGGAGTCGGTCACGTTAAAGTGTCTGGCAACTATGCAGCAGAC
CTTATGCCAAATTTGATGGGCAAAAGCGCTGGGTATCCTATTAATCTCTA
CCTAGACGCGCAGAACCGTCGGACTATCGAAGAGTTTGGCACGTCCAACT
TTTTTGGATTGAAAGGGAGTACTTATGTGACACCAAACTCTGCCAGTGTG
TTACCGAGCATCACGAACAACACGCTGATGCAACTGGCAAAAGATGAAGG
AATGGTGGTGGAACAACGAGAAATCGATATTGACGAATTGGAAGAATTTG
AGGAGGTCGGCGCGTGTGGCACTGCGGTTGTGATCACTGCGGTCTCACGT
GTGGTGCATGGGAGCAAGTTGTATGAGATAGGTAACGATCCCGACCGCGT
TGGCGAGCGCCTTCTTCGTTTGTATAACAAAGTGCGAGCCATCCAGTATG
GCGAGCAGCTAGACCTGCACGGTTGGGCGCAGCCATTGTTGATGTAA

protein sequence of Gcaud2489.t1

>Gcaud2489.t1 ID=Gcaud2489.t1|Name=Gcaud2489.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=349bp
MVQSEVKQATPKLDWKNLGFQYIQTACYVKCVWKDGEWSSPSIETEPFIR
MHIASTALHYGQSCFEGLKAFRGQDDVVRIFRADENAKRLHASAERLVIP
PVPEELFLYVVHMAVRENIDYVPPYGSGGSLYIRPLLFGSGAKIGLQSSD
EFTFLVMVVPVGDYYKGGLSPVTAIVMQNFDRAAPKGVGHVKVSGNYAAD
LMPNLMGKSAGYPINLYLDAQNRRTIEEFGTSNFFGLKGSTYVTPNSASV
LPSITNNTLMQLAKDEGMVVEQREIDIDELEEFEEVGACGTAVVITAVSR
VVHGSKLYEIGNDPDRVGERLLRLYNKVRAIQYGEQLDLHGWAQPLLM*

mRNA from alignment at NODE_1112_length_13701_cov_5.226598:7548..8594+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2489.t1 ID=Gcaud2489.t1|Name=Gcaud2489.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_1112_length_13701_cov_5.226598:7548..8594+ (Gracilaria caudata M_176_S67 male)
ATGGTACAATCAGAGGTGAAGCAAGCAACCCCAAAGCTGGACTGGAAAAA
CCTCGGATTTCAATACATTCAAACCGCATGCTATGTGAAATGTGTGTGGA
AAGATGGAGAATGGTCTTCGCCCTCTATTGAAACTGAACCGTTTATACGT
ATGCACATTGCTAGCACGGCTTTGCACTACGGACAAAGTTGTTTTGAAGG
GCTAAAGGCGTTTCGTGGACAAGATGATGTGGTAAGAATCTTTCGAGCCG
ATGAAAATGCAAAACGATTGCACGCTTCAGCAGAACGACTTGTGATTCCG
CCCGTTCCTGAAGAGTTATTTTTGTATGTTGTTCACATGGCAGTTCGCGA
GAATATTGACTACGTGCCACCGTATGGAAGTGGAGGATCATTGTATATCC
GACCATTACTTTTCGGGAGTGGCGCGAAAATTGGGTTACAATCATCTGAT
GAATTCACGTTTCTCGTAATGGTGGTGCCTGTCGGGGATTACTACAAGGG
TGGATTATCACCGGTGACGGCTATTGTGATGCAGAATTTCGATCGTGCAG
CTCCAAAGGGAGTCGGTCACGTTAAAGTGTCTGGCAACTATGCAGCAGAC
CTTATGCCAAATTTGATGGGCAAAAGCGCTGGGTATCCTATTAATCTCTA
CCTAGACGCGCAGAACCGTCGGACTATCGAAGAGTTTGGCACGTCCAACT
TTTTTGGATTGAAAGGGAGTACTTATGTGACACCAAACTCTGCCAGTGTG
TTACCGAGCATCACGAACAACACGCTGATGCAACTGGCAAAAGATGAAGG
AATGGTGGTGGAACAACGAGAAATCGATATTGACGAATTGGAAGAATTTG
AGGAGGTCGGCGCGTGTGGCACTGCGGTTGTGATCACTGCGGTCTCACGT
GTGGTGCATGGGAGCAAGTTGTATGAGATAGGTAACGATCCCGACCGCGT
TGGCGAGCGCCTTCTTCGTTTGTATAACAAAGTGCGAGCCATCCAGTATG
GCGAGCAGCTAGACCTGCACGGTTGGGCGCAGCCATTGTTGATGTAA

Coding sequence (CDS) from alignment at NODE_1112_length_13701_cov_5.226598:7548..8594+

>Gcaud2489.t1 ID=Gcaud2489.t1|Name=Gcaud2489.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1047bp|location=Sequence derived from alignment at NODE_1112_length_13701_cov_5.226598:7548..8594+ (Gracilaria caudata M_176_S67 male)
ATGGTACAATCAGAGGTGAAGCAAGCAACCCCAAAGCTGGACTGGAAAAA
CCTCGGATTTCAATACATTCAAACCGCATGCTATGTGAAATGTGTGTGGA
AAGATGGAGAATGGTCTTCGCCCTCTATTGAAACTGAACCGTTTATACGT
ATGCACATTGCTAGCACGGCTTTGCACTACGGACAAAGTTGTTTTGAAGG
GCTAAAGGCGTTTCGTGGACAAGATGATGTGGTAAGAATCTTTCGAGCCG
ATGAAAATGCAAAACGATTGCACGCTTCAGCAGAACGACTTGTGATTCCG
CCCGTTCCTGAAGAGTTATTTTTGTATGTTGTTCACATGGCAGTTCGCGA
GAATATTGACTACGTGCCACCGTATGGAAGTGGAGGATCATTGTATATCC
GACCATTACTTTTCGGGAGTGGCGCGAAAATTGGGTTACAATCATCTGAT
GAATTCACGTTTCTCGTAATGGTGGTGCCTGTCGGGGATTACTACAAGGG
TGGATTATCACCGGTGACGGCTATTGTGATGCAGAATTTCGATCGTGCAG
CTCCAAAGGGAGTCGGTCACGTTAAAGTGTCTGGCAACTATGCAGCAGAC
CTTATGCCAAATTTGATGGGCAAAAGCGCTGGGTATCCTATTAATCTCTA
CCTAGACGCGCAGAACCGTCGGACTATCGAAGAGTTTGGCACGTCCAACT
TTTTTGGATTGAAAGGGAGTACTTATGTGACACCAAACTCTGCCAGTGTG
TTACCGAGCATCACGAACAACACGCTGATGCAACTGGCAAAAGATGAAGG
AATGGTGGTGGAACAACGAGAAATCGATATTGACGAATTGGAAGAATTTG
AGGAGGTCGGCGCGTGTGGCACTGCGGTTGTGATCACTGCGGTCTCACGT
GTGGTGCATGGGAGCAAGTTGTATGAGATAGGTAACGATCCCGACCGCGT
TGGCGAGCGCCTTCTTCGTTTGTATAACAAAGTGCGAGCCATCCAGTATG
GCGAGCAGCTAGACCTGCACGGTTGGGCGCAGCCATTGTTGATGTAA