Gcaud2488.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2488.t1
Unique NameGcaud2488.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1112_length_13701_cov_5.226598contigNODE_1112_length_13701_cov_5.226598:3853..5238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2488Gcaud2488Gracilaria caudata M_176_S67 malegeneNODE_1112_length_13701_cov_5.226598 3853..5238 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2488.t1.start1Gcaud2488.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1112_length_13701_cov_5.226598 3853..3855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2488.t1.CDS1Gcaud2488.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1112_length_13701_cov_5.226598 3853..5238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2488.t1.exon1Gcaud2488.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1112_length_13701_cov_5.226598 3853..5238 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2488.t1.stop1Gcaud2488.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1112_length_13701_cov_5.226598 5236..5238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2488.t1Gcaud2488.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1112_length_13701_cov_5.226598 3853..5238 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2488.t1 ID=Gcaud2488.t1|Name=Gcaud2488.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=462bp
MSSSDDSDSSPDSGFLYLASMQSFRLKRDYVRAEKIAGSRRKRVKITRMS
KIDASDVSEWSDANNLERYRLTRTAMEWTECFLSNDIVLQGSYDCANLLR
STSCISSSPVVVEADAFFPYCSETELVLNGYVVDEVVRDKVWIVHLSHRR
SRQVTLEAGSVYLIGNPHKNRRSAFCHLCRNAHSLNKTPCPKVLRFMPVP
SHAHFKARIDDQYQKGARVLTVIPGEPSQLACSLADDDLCATCLRKALKD
RGIWFKMNGSCTDRHCPNVDWCECDEELEQDSGACAHYIYISEGKYNNLP
DDDLADAVANGLVRTVTGCVESDRRLGTSRSLRKFAKKWLRKQVKVSIEH
LLKEFSVQLYPLLKCEVMAMAMIDTRIADMIEGYKSFTLNTGIVTGFVEN
SEMMAVGPWLEGRLARDSEGTWWQTCRGEPILVSTESDVSTVCKASIDSI
GPSDELGRWIA*
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spliced messenger RNA

>Gcaud2488.t1 ID=Gcaud2488.t1|Name=Gcaud2488.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_1112_length_13701_cov_5.226598:3853..5238+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAGTAGCGACGACTCTGATAGTTCACCGGATTCGGGGTTTTTATA
CCTTGCATCCATGCAGAGCTTTCGCTTGAAAAGAGATTATGTGCGGGCCG
AGAAAATAGCTGGAAGTCGACGTAAACGAGTGAAAATAACCCGCATGTCA
AAAATAGATGCATCAGATGTATCCGAGTGGTCAGATGCCAACAATTTAGA
ACGATACCGACTAACAAGGACTGCAATGGAATGGACAGAATGTTTCTTAT
CTAATGATATCGTTTTGCAAGGAAGTTACGACTGTGCTAACCTGTTGCGA
AGCACCTCCTGTATATCATCCAGTCCAGTTGTTGTTGAAGCTGATGCTTT
TTTTCCGTATTGTTCAGAAACCGAGCTTGTGTTGAATGGTTACGTAGTTG
ATGAAGTTGTCCGCGATAAAGTGTGGATAGTCCATCTCTCACATCGAAGG
TCTCGCCAAGTAACGCTGGAAGCTGGCTCAGTGTACCTAATCGGGAACCC
TCACAAGAATCGACGGTCAGCTTTCTGTCACCTATGTCGAAATGCGCATA
GTCTAAACAAGACACCGTGCCCCAAAGTGTTGAGATTCATGCCTGTTCCA
TCTCACGCTCACTTCAAAGCTCGAATAGATGATCAATATCAAAAGGGCGC
TCGTGTACTGACAGTGATACCTGGAGAGCCATCTCAACTTGCTTGCAGTC
TCGCAGATGACGACCTCTGCGCTACCTGCCTCCGAAAAGCACTCAAAGAT
AGAGGCATATGGTTCAAAATGAATGGAAGCTGTACAGATCGACACTGTCC
AAATGTAGATTGGTGTGAGTGCGATGAAGAATTGGAGCAGGATTCGGGAG
CCTGCGCACATTACATATATATCTCAGAGGGAAAGTACAACAATTTGCCA
GACGATGACCTGGCTGATGCGGTTGCAAATGGCCTAGTGAGAACTGTAAC
CGGCTGCGTCGAATCGGATCGACGTCTAGGTACATCACGTTCTCTTCGGA
AGTTTGCCAAAAAGTGGTTGCGAAAGCAGGTCAAAGTGTCTATAGAGCAC
TTGTTGAAGGAGTTTTCGGTGCAGTTATATCCTTTGCTTAAATGCGAAGT
GATGGCAATGGCAATGATTGACACCAGAATTGCCGACATGATTGAAGGTT
ATAAGAGTTTCACTCTCAATACAGGTATTGTTACTGGGTTCGTGGAAAAC
TCAGAGATGATGGCAGTGGGACCATGGCTCGAGGGTCGCCTTGCACGGGA
CTCTGAAGGTACATGGTGGCAAACCTGTCGTGGCGAGCCGATACTCGTGA
GCACGGAAAGCGATGTTTCTACGGTCTGCAAGGCGAGCATCGACTCTATA
GGACCGTCAGATGAACTGGGAAGATGGATTGCTTAA
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protein sequence of Gcaud2488.t1

>Gcaud2488.t1 ID=Gcaud2488.t1|Name=Gcaud2488.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=462bp
MSSSDDSDSSPDSGFLYLASMQSFRLKRDYVRAEKIAGSRRKRVKITRMS
KIDASDVSEWSDANNLERYRLTRTAMEWTECFLSNDIVLQGSYDCANLLR
STSCISSSPVVVEADAFFPYCSETELVLNGYVVDEVVRDKVWIVHLSHRR
SRQVTLEAGSVYLIGNPHKNRRSAFCHLCRNAHSLNKTPCPKVLRFMPVP
SHAHFKARIDDQYQKGARVLTVIPGEPSQLACSLADDDLCATCLRKALKD
RGIWFKMNGSCTDRHCPNVDWCECDEELEQDSGACAHYIYISEGKYNNLP
DDDLADAVANGLVRTVTGCVESDRRLGTSRSLRKFAKKWLRKQVKVSIEH
LLKEFSVQLYPLLKCEVMAMAMIDTRIADMIEGYKSFTLNTGIVTGFVEN
SEMMAVGPWLEGRLARDSEGTWWQTCRGEPILVSTESDVSTVCKASIDSI
GPSDELGRWIA*
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mRNA from alignment at NODE_1112_length_13701_cov_5.226598:3853..5238+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2488.t1 ID=Gcaud2488.t1|Name=Gcaud2488.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_1112_length_13701_cov_5.226598:3853..5238+ (Gracilaria caudata M_176_S67 male)
ATGTCTAGTAGCGACGACTCTGATAGTTCACCGGATTCGGGGTTTTTATA
CCTTGCATCCATGCAGAGCTTTCGCTTGAAAAGAGATTATGTGCGGGCCG
AGAAAATAGCTGGAAGTCGACGTAAACGAGTGAAAATAACCCGCATGTCA
AAAATAGATGCATCAGATGTATCCGAGTGGTCAGATGCCAACAATTTAGA
ACGATACCGACTAACAAGGACTGCAATGGAATGGACAGAATGTTTCTTAT
CTAATGATATCGTTTTGCAAGGAAGTTACGACTGTGCTAACCTGTTGCGA
AGCACCTCCTGTATATCATCCAGTCCAGTTGTTGTTGAAGCTGATGCTTT
TTTTCCGTATTGTTCAGAAACCGAGCTTGTGTTGAATGGTTACGTAGTTG
ATGAAGTTGTCCGCGATAAAGTGTGGATAGTCCATCTCTCACATCGAAGG
TCTCGCCAAGTAACGCTGGAAGCTGGCTCAGTGTACCTAATCGGGAACCC
TCACAAGAATCGACGGTCAGCTTTCTGTCACCTATGTCGAAATGCGCATA
GTCTAAACAAGACACCGTGCCCCAAAGTGTTGAGATTCATGCCTGTTCCA
TCTCACGCTCACTTCAAAGCTCGAATAGATGATCAATATCAAAAGGGCGC
TCGTGTACTGACAGTGATACCTGGAGAGCCATCTCAACTTGCTTGCAGTC
TCGCAGATGACGACCTCTGCGCTACCTGCCTCCGAAAAGCACTCAAAGAT
AGAGGCATATGGTTCAAAATGAATGGAAGCTGTACAGATCGACACTGTCC
AAATGTAGATTGGTGTGAGTGCGATGAAGAATTGGAGCAGGATTCGGGAG
CCTGCGCACATTACATATATATCTCAGAGGGAAAGTACAACAATTTGCCA
GACGATGACCTGGCTGATGCGGTTGCAAATGGCCTAGTGAGAACTGTAAC
CGGCTGCGTCGAATCGGATCGACGTCTAGGTACATCACGTTCTCTTCGGA
AGTTTGCCAAAAAGTGGTTGCGAAAGCAGGTCAAAGTGTCTATAGAGCAC
TTGTTGAAGGAGTTTTCGGTGCAGTTATATCCTTTGCTTAAATGCGAAGT
GATGGCAATGGCAATGATTGACACCAGAATTGCCGACATGATTGAAGGTT
ATAAGAGTTTCACTCTCAATACAGGTATTGTTACTGGGTTCGTGGAAAAC
TCAGAGATGATGGCAGTGGGACCATGGCTCGAGGGTCGCCTTGCACGGGA
CTCTGAAGGTACATGGTGGCAAACCTGTCGTGGCGAGCCGATACTCGTGA
GCACGGAAAGCGATGTTTCTACGGTCTGCAAGGCGAGCATCGACTCTATA
GGACCGTCAGATGAACTGGGAAGATGGATTGCTTAA
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Coding sequence (CDS) from alignment at NODE_1112_length_13701_cov_5.226598:3853..5238+

>Gcaud2488.t1 ID=Gcaud2488.t1|Name=Gcaud2488.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1386bp|location=Sequence derived from alignment at NODE_1112_length_13701_cov_5.226598:3853..5238+ (Gracilaria caudata M_176_S67 male)
ATGTCTAGTAGCGACGACTCTGATAGTTCACCGGATTCGGGGTTTTTATA
CCTTGCATCCATGCAGAGCTTTCGCTTGAAAAGAGATTATGTGCGGGCCG
AGAAAATAGCTGGAAGTCGACGTAAACGAGTGAAAATAACCCGCATGTCA
AAAATAGATGCATCAGATGTATCCGAGTGGTCAGATGCCAACAATTTAGA
ACGATACCGACTAACAAGGACTGCAATGGAATGGACAGAATGTTTCTTAT
CTAATGATATCGTTTTGCAAGGAAGTTACGACTGTGCTAACCTGTTGCGA
AGCACCTCCTGTATATCATCCAGTCCAGTTGTTGTTGAAGCTGATGCTTT
TTTTCCGTATTGTTCAGAAACCGAGCTTGTGTTGAATGGTTACGTAGTTG
ATGAAGTTGTCCGCGATAAAGTGTGGATAGTCCATCTCTCACATCGAAGG
TCTCGCCAAGTAACGCTGGAAGCTGGCTCAGTGTACCTAATCGGGAACCC
TCACAAGAATCGACGGTCAGCTTTCTGTCACCTATGTCGAAATGCGCATA
GTCTAAACAAGACACCGTGCCCCAAAGTGTTGAGATTCATGCCTGTTCCA
TCTCACGCTCACTTCAAAGCTCGAATAGATGATCAATATCAAAAGGGCGC
TCGTGTACTGACAGTGATACCTGGAGAGCCATCTCAACTTGCTTGCAGTC
TCGCAGATGACGACCTCTGCGCTACCTGCCTCCGAAAAGCACTCAAAGAT
AGAGGCATATGGTTCAAAATGAATGGAAGCTGTACAGATCGACACTGTCC
AAATGTAGATTGGTGTGAGTGCGATGAAGAATTGGAGCAGGATTCGGGAG
CCTGCGCACATTACATATATATCTCAGAGGGAAAGTACAACAATTTGCCA
GACGATGACCTGGCTGATGCGGTTGCAAATGGCCTAGTGAGAACTGTAAC
CGGCTGCGTCGAATCGGATCGACGTCTAGGTACATCACGTTCTCTTCGGA
AGTTTGCCAAAAAGTGGTTGCGAAAGCAGGTCAAAGTGTCTATAGAGCAC
TTGTTGAAGGAGTTTTCGGTGCAGTTATATCCTTTGCTTAAATGCGAAGT
GATGGCAATGGCAATGATTGACACCAGAATTGCCGACATGATTGAAGGTT
ATAAGAGTTTCACTCTCAATACAGGTATTGTTACTGGGTTCGTGGAAAAC
TCAGAGATGATGGCAGTGGGACCATGGCTCGAGGGTCGCCTTGCACGGGA
CTCTGAAGGTACATGGTGGCAAACCTGTCGTGGCGAGCCGATACTCGTGA
GCACGGAAAGCGATGTTTCTACGGTCTGCAAGGCGAGCATCGACTCTATA
GGACCGTCAGATGAACTGGGAAGATGGATTGCTTAA
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