Gcaud2486.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2486.t1
Unique Name	Gcaud2486.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	628

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1505_length_10130_cov_4.819006	contig	NODE_1505_length_10130_cov_4.819006:5550..7509 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD14177
PFAMs	NAD_binding_8
Max annot lvl	2759\|Eukaryota
Evalue	7.89e-23
EggNOG OGs	2CYBD@1\|root,2S3CI@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2486	Gcaud2486	Gracilaria caudata M_176_S67 male	gene	NODE_1505_length_10130_cov_4.819006 5550..7509 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2486.t1	Gcaud2486.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1505_length_10130_cov_4.819006 5550..7509 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2486.t1.start1	Gcaud2486.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1505_length_10130_cov_4.819006 5550..5552 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2486.t1.CDS1	Gcaud2486.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1505_length_10130_cov_4.819006 5550..5815 +
Gcaud2486.t1.CDS2	Gcaud2486.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1505_length_10130_cov_4.819006 5892..7509 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2486.t1.exon1	Gcaud2486.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1505_length_10130_cov_4.819006 5550..5815 +
Gcaud2486.t1.exon2	Gcaud2486.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1505_length_10130_cov_4.819006 5892..7509 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2486.t1.intron1	Gcaud2486.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1505_length_10130_cov_4.819006 5816..5891 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2486.t1.stop1	Gcaud2486.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1505_length_10130_cov_4.819006 7507..7509 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1505_length_10130_cov_4.819006:5550..7509+
coding sequence from alignment at NODE_1505_length_10130_cov_4.819006:5550..7509+

mRNA sequence

>Gcaud2486.t1 ID=Gcaud2486.t1|Name=Gcaud2486.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=628bp
MISSLFLALVLTFVPRASATPLRDCRVAIVGAGIGGAYTAWRLAVDSGAI
PARYVCIFEAKTRPGGRILSVTNAVPAFENYTVDLGAYRFHRTRHPLTRF
VVEDILHLPVRCYTDLFSRNTNGDCAAETQQLVTARGRSFGFTPDGASAE
TALSNYSSEVPYVIPPEEQWGPTRPRRSPRSPYDLLFPPSSIIPETESAW
TEIDSESSYPAAMRRADAAIRLLSNGSYRGASYWDVALSTAASAEGYDPE
EIALYLGVDVSVVEGYIIRHSIAELSQIELRDAAAAKRPMSGPNGYVVPV
ETCNGQTRRIGMSTVVRELLHSCESAGVRVYYGAKIVAISRLRRSRQLLK
LKIENGGTVVARDVVLNIGKPDLIAMGVTSEPLRSGGDVFRQAVDHTTVS
GLSKMYCFWEDAWWVTKLNRTEGRFKATGELVQSGRYHDGDVTCRDLNNT
KHCRGAVLISYVQGDAYMVGSGLFPHNFNSAPYSPLSNFDNVHTLVPGNM
TASEQLLFDDIHAQLRRIHRAPLASAGLGADAIPESAGCVYADWYDVGTH
EFIGTGLAGVNVYRRYTRPVSSLNISLVNEAWGEVAGWAESSLRSAERAL
FHQYKLKRPSWMDEPFHTSVIRKFNRG*

spliced messenger RNA

>Gcaud2486.t1 ID=Gcaud2486.t1|Name=Gcaud2486.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at NODE_1505_length_10130_cov_4.819006:5550..7509+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTCCTCACTTTTCCTCGCGTTGGTCCTTACATTTGTGCCGCGCGC
ATCTGCTACTCCACTGCGAGATTGCCGCGTTGCGATCGTAGGCGCCGGCA
TTGGCGGGGCGTACACGGCGTGGCGTTTGGCCGTTGACTCTGGTGCCATT
CCAGCCCGTTACGTGTGCATCTTTGAAGCCAAGACGCGTCCTGGTGGTCG
CATTCTCTCCGTGACAAACGCCGTGCCCGCCTTCGAAAATTACACGGTGG
ATCTGGGAGCATATCGATTCCACCGTACACGTCATCCACTTACTCGCTTT
GTGGTTGAGGATATTCTTCATCTTCCAGTCCGTTGTTATACAGACCTGTT
TTCGAGGAACACAAACGGTGATTGCGCTGCTGAAACGCAGCAACTTGTCA
CTGCAAGAGGCCGTAGCTTCGGCTTCACGCCCGATGGTGCGTCCGCAGAG
ACTGCACTTTCAAACTACTCCTCGGAAGTGCCGTATGTGATCCCACCAGA
GGAACAATGGGGCCCTACTCGACCTCGAAGATCTCCTCGTTCTCCATACG
ACCTTCTTTTCCCACCATCTTCAATCATTCCCGAAACTGAATCTGCCTGG
ACCGAAATAGATTCCGAATCCTCTTATCCGGCAGCGATGCGTCGTGCTGA
TGCTGCCATACGTCTCTTAAGTAACGGAAGCTATCGTGGTGCATCATACT
GGGATGTGGCACTGTCCACTGCAGCATCGGCCGAGGGATATGATCCTGAG
GAAATTGCATTGTATCTTGGAGTTGATGTGTCTGTGGTGGAAGGGTATAT
TATCCGCCATAGTATCGCCGAGCTCTCACAGATCGAGCTTCGCGACGCCG
CTGCAGCAAAACGACCCATGTCCGGTCCAAATGGCTACGTTGTGCCCGTA
GAAACTTGTAATGGTCAAACTCGTCGCATCGGAATGAGCACTGTTGTCCG
CGAGTTGCTGCACTCGTGCGAGTCGGCTGGTGTGCGTGTTTACTATGGGG
CCAAGATTGTTGCGATCTCACGTCTCCGTAGAAGTCGGCAGCTATTGAAA
TTGAAAATTGAGAACGGTGGTACAGTTGTAGCTAGAGATGTGGTGTTGAA
CATCGGCAAACCCGATCTCATTGCCATGGGTGTCACGTCAGAGCCCCTTC
GAAGCGGTGGAGATGTATTTCGTCAAGCCGTCGACCATACTACTGTCTCT
GGCCTCTCGAAGATGTACTGCTTCTGGGAGGACGCGTGGTGGGTAACTAA
ACTGAATCGAACTGAGGGCCGATTCAAAGCCACTGGTGAATTGGTCCAGT
CTGGGAGATACCATGATGGCGACGTGACATGTCGTGATTTGAATAATACC
AAACACTGTCGTGGTGCGGTTCTCATCTCGTATGTTCAGGGTGATGCATA
CATGGTAGGATCAGGACTATTCCCGCACAATTTCAATTCTGCGCCATACT
CGCCGTTGTCGAACTTTGACAACGTGCATACGCTAGTTCCTGGAAACATG
ACAGCTTCGGAGCAGCTCCTCTTTGACGACATTCATGCACAGCTTCGACG
GATCCATCGAGCTCCTTTGGCTTCTGCTGGGCTTGGAGCTGATGCTATAC
CAGAGTCCGCCGGATGCGTGTATGCCGATTGGTATGATGTAGGTACACAT
GAATTCATCGGAACTGGTCTGGCCGGTGTCAACGTTTATCGGCGCTACAC
TCGCCCTGTGTCGAGTCTCAACATCTCTCTGGTGAACGAGGCTTGGGGTG
AGGTTGCAGGGTGGGCTGAGTCTTCGCTGCGCAGCGCCGAACGTGCGCTA
TTTCACCAATACAAGTTGAAGCGACCGTCGTGGATGGACGAACCGTTCCA
CACCTCAGTGATTCGTAAATTCAACCGGGGCTAG

protein sequence of Gcaud2486.t1

>Gcaud2486.t1 ID=Gcaud2486.t1|Name=Gcaud2486.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=628bp
MISSLFLALVLTFVPRASATPLRDCRVAIVGAGIGGAYTAWRLAVDSGAI
PARYVCIFEAKTRPGGRILSVTNAVPAFENYTVDLGAYRFHRTRHPLTRF
VVEDILHLPVRCYTDLFSRNTNGDCAAETQQLVTARGRSFGFTPDGASAE
TALSNYSSEVPYVIPPEEQWGPTRPRRSPRSPYDLLFPPSSIIPETESAW
TEIDSESSYPAAMRRADAAIRLLSNGSYRGASYWDVALSTAASAEGYDPE
EIALYLGVDVSVVEGYIIRHSIAELSQIELRDAAAAKRPMSGPNGYVVPV
ETCNGQTRRIGMSTVVRELLHSCESAGVRVYYGAKIVAISRLRRSRQLLK
LKIENGGTVVARDVVLNIGKPDLIAMGVTSEPLRSGGDVFRQAVDHTTVS
GLSKMYCFWEDAWWVTKLNRTEGRFKATGELVQSGRYHDGDVTCRDLNNT
KHCRGAVLISYVQGDAYMVGSGLFPHNFNSAPYSPLSNFDNVHTLVPGNM
TASEQLLFDDIHAQLRRIHRAPLASAGLGADAIPESAGCVYADWYDVGTH
EFIGTGLAGVNVYRRYTRPVSSLNISLVNEAWGEVAGWAESSLRSAERAL
FHQYKLKRPSWMDEPFHTSVIRKFNRG*

mRNA from alignment at NODE_1505_length_10130_cov_4.819006:5550..7509+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2486.t1 ID=Gcaud2486.t1|Name=Gcaud2486.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1960bp|location=Sequence derived from alignment at NODE_1505_length_10130_cov_4.819006:5550..7509+ (Gracilaria caudata M_176_S67 male)
ATGATCTCCTCACTTTTCCTCGCGTTGGTCCTTACATTTGTGCCGCGCGC
ATCTGCTACTCCACTGCGAGATTGCCGCGTTGCGATCGTAGGCGCCGGCA
TTGGCGGGGCGTACACGGCGTGGCGTTTGGCCGTTGACTCTGGTGCCATT
CCAGCCCGTTACGTGTGCATCTTTGAAGCCAAGACGCGTCCTGGTGGTCG
CATTCTCTCCGTGACAAACGCCGTGCCCGCCTTCGAAAATTACACGGTGG
ATCTGGGAGCATATCGGTATGTCCTGTAATCATTCTCCTGTCTCGAGACT
TTGCGTACACTACGCTACTTCAGTTCGCTGACGAACCCATAGATTCCACC
GTACACGTCATCCACTTACTCGCTTTGTGGTTGAGGATATTCTTCATCTT
CCAGTCCGTTGTTATACAGACCTGTTTTCGAGGAACACAAACGGTGATTG
CGCTGCTGAAACGCAGCAACTTGTCACTGCAAGAGGCCGTAGCTTCGGCT
TCACGCCCGATGGTGCGTCCGCAGAGACTGCACTTTCAAACTACTCCTCG
GAAGTGCCGTATGTGATCCCACCAGAGGAACAATGGGGCCCTACTCGACC
TCGAAGATCTCCTCGTTCTCCATACGACCTTCTTTTCCCACCATCTTCAA
TCATTCCCGAAACTGAATCTGCCTGGACCGAAATAGATTCCGAATCCTCT
TATCCGGCAGCGATGCGTCGTGCTGATGCTGCCATACGTCTCTTAAGTAA
CGGAAGCTATCGTGGTGCATCATACTGGGATGTGGCACTGTCCACTGCAG
CATCGGCCGAGGGATATGATCCTGAGGAAATTGCATTGTATCTTGGAGTT
GATGTGTCTGTGGTGGAAGGGTATATTATCCGCCATAGTATCGCCGAGCT
CTCACAGATCGAGCTTCGCGACGCCGCTGCAGCAAAACGACCCATGTCCG
GTCCAAATGGCTACGTTGTGCCCGTAGAAACTTGTAATGGTCAAACTCGT
CGCATCGGAATGAGCACTGTTGTCCGCGAGTTGCTGCACTCGTGCGAGTC
GGCTGGTGTGCGTGTTTACTATGGGGCCAAGATTGTTGCGATCTCACGTC
TCCGTAGAAGTCGGCAGCTATTGAAATTGAAAATTGAGAACGGTGGTACA
GTTGTAGCTAGAGATGTGGTGTTGAACATCGGCAAACCCGATCTCATTGC
CATGGGTGTCACGTCAGAGCCCCTTCGAAGCGGTGGAGATGTATTTCGTC
AAGCCGTCGACCATACTACTGTCTCTGGCCTCTCGAAGATGTACTGCTTC
TGGGAGGACGCGTGGTGGGTAACTAAACTGAATCGAACTGAGGGCCGATT
CAAAGCCACTGGTGAATTGGTCCAGTCTGGGAGATACCATGATGGCGACG
TGACATGTCGTGATTTGAATAATACCAAACACTGTCGTGGTGCGGTTCTC
ATCTCGTATGTTCAGGGTGATGCATACATGGTAGGATCAGGACTATTCCC
GCACAATTTCAATTCTGCGCCATACTCGCCGTTGTCGAACTTTGACAACG
TGCATACGCTAGTTCCTGGAAACATGACAGCTTCGGAGCAGCTCCTCTTT
GACGACATTCATGCACAGCTTCGACGGATCCATCGAGCTCCTTTGGCTTC
TGCTGGGCTTGGAGCTGATGCTATACCAGAGTCCGCCGGATGCGTGTATG
CCGATTGGTATGATGTAGGTACACATGAATTCATCGGAACTGGTCTGGCC
GGTGTCAACGTTTATCGGCGCTACACTCGCCCTGTGTCGAGTCTCAACAT
CTCTCTGGTGAACGAGGCTTGGGGTGAGGTTGCAGGGTGGGCTGAGTCTT
CGCTGCGCAGCGCCGAACGTGCGCTATTTCACCAATACAAGTTGAAGCGA
CCGTCGTGGATGGACGAACCGTTCCACACCTCAGTGATTCGTAAATTCAA
CCGGGGCTAG

Coding sequence (CDS) from alignment at NODE_1505_length_10130_cov_4.819006:5550..7509+

>Gcaud2486.t1 ID=Gcaud2486.t1|Name=Gcaud2486.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1884bp|location=Sequence derived from alignment at NODE_1505_length_10130_cov_4.819006:5550..7509+ (Gracilaria caudata M_176_S67 male)
ATGATCTCCTCACTTTTCCTCGCGTTGGTCCTTACATTTGTGCCGCGCGC
ATCTGCTACTCCACTGCGAGATTGCCGCGTTGCGATCGTAGGCGCCGGCA
TTGGCGGGGCGTACACGGCGTGGCGTTTGGCCGTTGACTCTGGTGCCATT
CCAGCCCGTTACGTGTGCATCTTTGAAGCCAAGACGCGTCCTGGTGGTCG
CATTCTCTCCGTGACAAACGCCGTGCCCGCCTTCGAAAATTACACGGTGG
ATCTGGGAGCATATCGATTCCACCGTACACGTCATCCACTTACTCGCTTT
GTGGTTGAGGATATTCTTCATCTTCCAGTCCGTTGTTATACAGACCTGTT
TTCGAGGAACACAAACGGTGATTGCGCTGCTGAAACGCAGCAACTTGTCA
CTGCAAGAGGCCGTAGCTTCGGCTTCACGCCCGATGGTGCGTCCGCAGAG
ACTGCACTTTCAAACTACTCCTCGGAAGTGCCGTATGTGATCCCACCAGA
GGAACAATGGGGCCCTACTCGACCTCGAAGATCTCCTCGTTCTCCATACG
ACCTTCTTTTCCCACCATCTTCAATCATTCCCGAAACTGAATCTGCCTGG
ACCGAAATAGATTCCGAATCCTCTTATCCGGCAGCGATGCGTCGTGCTGA
TGCTGCCATACGTCTCTTAAGTAACGGAAGCTATCGTGGTGCATCATACT
GGGATGTGGCACTGTCCACTGCAGCATCGGCCGAGGGATATGATCCTGAG
GAAATTGCATTGTATCTTGGAGTTGATGTGTCTGTGGTGGAAGGGTATAT
TATCCGCCATAGTATCGCCGAGCTCTCACAGATCGAGCTTCGCGACGCCG
CTGCAGCAAAACGACCCATGTCCGGTCCAAATGGCTACGTTGTGCCCGTA
GAAACTTGTAATGGTCAAACTCGTCGCATCGGAATGAGCACTGTTGTCCG
CGAGTTGCTGCACTCGTGCGAGTCGGCTGGTGTGCGTGTTTACTATGGGG
CCAAGATTGTTGCGATCTCACGTCTCCGTAGAAGTCGGCAGCTATTGAAA
TTGAAAATTGAGAACGGTGGTACAGTTGTAGCTAGAGATGTGGTGTTGAA
CATCGGCAAACCCGATCTCATTGCCATGGGTGTCACGTCAGAGCCCCTTC
GAAGCGGTGGAGATGTATTTCGTCAAGCCGTCGACCATACTACTGTCTCT
GGCCTCTCGAAGATGTACTGCTTCTGGGAGGACGCGTGGTGGGTAACTAA
ACTGAATCGAACTGAGGGCCGATTCAAAGCCACTGGTGAATTGGTCCAGT
CTGGGAGATACCATGATGGCGACGTGACATGTCGTGATTTGAATAATACC
AAACACTGTCGTGGTGCGGTTCTCATCTCGTATGTTCAGGGTGATGCATA
CATGGTAGGATCAGGACTATTCCCGCACAATTTCAATTCTGCGCCATACT
CGCCGTTGTCGAACTTTGACAACGTGCATACGCTAGTTCCTGGAAACATG
ACAGCTTCGGAGCAGCTCCTCTTTGACGACATTCATGCACAGCTTCGACG
GATCCATCGAGCTCCTTTGGCTTCTGCTGGGCTTGGAGCTGATGCTATAC
CAGAGTCCGCCGGATGCGTGTATGCCGATTGGTATGATGTAGGTACACAT
GAATTCATCGGAACTGGTCTGGCCGGTGTCAACGTTTATCGGCGCTACAC
TCGCCCTGTGTCGAGTCTCAACATCTCTCTGGTGAACGAGGCTTGGGGTG
AGGTTGCAGGGTGGGCTGAGTCTTCGCTGCGCAGCGCCGAACGTGCGCTA
TTTCACCAATACAAGTTGAAGCGACCGTCGTGGATGGACGAACCGTTCCA
CACCTCAGTGATTCGTAAATTCAACCGGGGCTAG