Gcaud2483.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2483.t1
Unique NameGcaud2483.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_986_length_15474_cov_4.763960contigNODE_986_length_15474_cov_4.763960:13108..13621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2483Gcaud2483Gracilaria caudata M_176_S67 malegeneNODE_986_length_15474_cov_4.763960 13108..13621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2483.t1Gcaud2483.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_986_length_15474_cov_4.763960 13108..13621 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2483.t1.start1Gcaud2483.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_986_length_15474_cov_4.763960 13108..13110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2483.t1.CDS1Gcaud2483.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_986_length_15474_cov_4.763960 13108..13400 +
Gcaud2483.t1.CDS2Gcaud2483.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_986_length_15474_cov_4.763960 13531..13621 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2483.t1.exon1Gcaud2483.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_986_length_15474_cov_4.763960 13108..13400 +
Gcaud2483.t1.exon2Gcaud2483.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_986_length_15474_cov_4.763960 13531..13621 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2483.t1.intron1Gcaud2483.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_986_length_15474_cov_4.763960 13401..13530 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2483.t1.stop1Gcaud2483.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_986_length_15474_cov_4.763960 13619..13621 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2483.t1 ID=Gcaud2483.t1|Name=Gcaud2483.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=128bp
MTPINLLNPTSELAVMAKNDYLVEREKFHSGDDFPLWDDTKKNEAATGDI
LMFCHNQLAKGRDLAEVFYITKKLPPSFRPKHWLIPDHQNRSVLVLSRSR
LKDDRSGPSAAQSIRQMLPISHVEALV*
back to top

spliced messenger RNA

>Gcaud2483.t1 ID=Gcaud2483.t1|Name=Gcaud2483.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp|location=Sequence derived from alignment at NODE_986_length_15474_cov_4.763960:13108..13621+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACCAATCAATTTGTTAAATCCAACATCAGAACTTGCTGTCATGGC
AAAGAATGATTATCTAGTGGAAAGGGAAAAGTTTCACTCGGGAGATGACT
TCCCATTATGGGACGACACCAAGAAGAATGAAGCGGCTACAGGCGACATT
TTAATGTTTTGCCACAACCAACTCGCGAAAGGTCGAGACCTTGCTGAAGT
ATTTTACATTACGAAGAAACTGCCGCCATCATTCAGACCAAAACATTGGC
TCATTCCGGACCACCAAAACCGTTCGGTACTAGTGTTATCCAGGAGTCGT
TTGAAGGATGATCGATCTGGGCCGAGCGCTGCTCAATCGATACGTCAAAT
GCTACCGATAAGTCATGTGGAAGCTTTAGTTTAG
back to top

protein sequence of Gcaud2483.t1

>Gcaud2483.t1 ID=Gcaud2483.t1|Name=Gcaud2483.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=128bp
MTPINLLNPTSELAVMAKNDYLVEREKFHSGDDFPLWDDTKKNEAATGDI
LMFCHNQLAKGRDLAEVFYITKKLPPSFRPKHWLIPDHQNRSVLVLSRSR
LKDDRSGPSAAQSIRQMLPISHVEALV*
back to top

mRNA from alignment at NODE_986_length_15474_cov_4.763960:13108..13621+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2483.t1 ID=Gcaud2483.t1|Name=Gcaud2483.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=514bp|location=Sequence derived from alignment at NODE_986_length_15474_cov_4.763960:13108..13621+ (Gracilaria caudata M_176_S67 male)
ATGACACCAATCAATTTGTTAAATCCAACATCAGAACTTGCTGTCATGGC
AAAGAATGATTATCTAGTGGAAAGGGAAAAGTTTCACTCGGGAGATGACT
TCCCATTATGGGACGACACCAAGAAGAATGAAGCGGCTACAGGCGACATT
TTAATGTTTTGCCACAACCAACTCGCGAAAGGTCGAGACCTTGCTGAAGT
ATTTTACATTACGAAGAAACTGCCGCCATCATTCAGACCAAAACATTGGC
TCATTCCGGACCACCAAAACCGTTCGGTACTAGTGTTATCCAGGTACGTG
GGATACTGTTCGGTGTCAGGAGTTATGGTGGCTGTTGGATCCCGTCCGTC
ATTAACGGAAGGTGTGAACTGCTTGAGAGGCACCGTGCGCCGGTCGCTTA
AACATGATCTACAAATTGTTCAGGAGTCGTTTGAAGGATGATCGATCTGG
GCCGAGCGCTGCTCAATCGATACGTCAAATGCTACCGATAAGTCATGTGG
AAGCTTTAGTTTAG
back to top

Coding sequence (CDS) from alignment at NODE_986_length_15474_cov_4.763960:13108..13621+

>Gcaud2483.t1 ID=Gcaud2483.t1|Name=Gcaud2483.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=384bp|location=Sequence derived from alignment at NODE_986_length_15474_cov_4.763960:13108..13621+ (Gracilaria caudata M_176_S67 male)
ATGACACCAATCAATTTGTTAAATCCAACATCAGAACTTGCTGTCATGGC
AAAGAATGATTATCTAGTGGAAAGGGAAAAGTTTCACTCGGGAGATGACT
TCCCATTATGGGACGACACCAAGAAGAATGAAGCGGCTACAGGCGACATT
TTAATGTTTTGCCACAACCAACTCGCGAAAGGTCGAGACCTTGCTGAAGT
ATTTTACATTACGAAGAAACTGCCGCCATCATTCAGACCAAAACATTGGC
TCATTCCGGACCACCAAAACCGTTCGGTACTAGTGTTATCCAGGAGTCGT
TTGAAGGATGATCGATCTGGGCCGAGCGCTGCTCAATCGATACGTCAAAT
GCTACCGATAAGTCATGTGGAAGCTTTAGTTTAG
back to top