Gcaud2482.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2482.t1
Unique NameGcaud2482.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length539
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_986_length_15474_cov_4.763960contigNODE_986_length_15474_cov_4.763960:1188..3239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX72853
Max annot lvl33208|Metazoa
Evalue2e-17
EggNOG OGs2CMUJ@1|root,2QS0X@2759|Eukaryota,39VGF@33154|Opisthokonta,3C21T@33208|Metazoa,3E4IW@33213|Bilateria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2482Gcaud2482Gracilaria caudata M_176_S67 malegeneNODE_986_length_15474_cov_4.763960 1188..3239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2482.t1Gcaud2482.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_986_length_15474_cov_4.763960 1188..3239 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2482.t1.stop1Gcaud2482.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_986_length_15474_cov_4.763960 1188..1190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2482.t1.CDS1Gcaud2482.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_986_length_15474_cov_4.763960 1188..1706 -
Gcaud2482.t1.CDS2Gcaud2482.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_986_length_15474_cov_4.763960 1921..2358 -
Gcaud2482.t1.CDS3Gcaud2482.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_986_length_15474_cov_4.763960 2580..3239 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2482.t1.exon1Gcaud2482.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_986_length_15474_cov_4.763960 1188..1706 -
Gcaud2482.t1.exon2Gcaud2482.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_986_length_15474_cov_4.763960 1921..2358 -
Gcaud2482.t1.exon3Gcaud2482.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_986_length_15474_cov_4.763960 2580..3239 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2482.t1.intron1Gcaud2482.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_986_length_15474_cov_4.763960 1707..1920 -
Gcaud2482.t1.intron2Gcaud2482.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_986_length_15474_cov_4.763960 2359..2579 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2482.t1.start1Gcaud2482.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_986_length_15474_cov_4.763960 3237..3239 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2482.t1 ID=Gcaud2482.t1|Name=Gcaud2482.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=539bp
MRGAVVDGKRASRKRSIERRVLRGLLCTTSTAKEVQVLVNEGHQYVSSPT
ATEEEEIEGIEKQLSNINALEEAKSAPENASLERLIPVQPDVVQSNNENE
YKCNIMNCVIDSPGSSGTATGHNCSSCNRGVHLICCIRVLRIEVTDENTA
LYCSSGYESNTQISGENTQRQSSIVGEKRRGSEGTAPSKAEKGIWSGSSA
TLFEEARKDWNFLLSNGTIPGAISQLRRSSFLQIVPILTRGEQKRKAAVD
YVLGILVFDNLRTVREIIDGKVREPDIQHLCHGQIDAIEEYLKFSYLKHI
GSGQDVLHCPKIALETALGTDQNRQGSRDPLRSTCRQCMMSFQVIENEDI
QQFYFRPIQWTLTKGELLTIPRVFFTDVGVGVCCTLDAILARTKAELSSL
KSFYLLSDNAKCYQNDLIPVLAPFISKSHSLFMTGFVHFETQREKSLVHA
QFALDMRHINRYGDQTRNDVTTLADIVMAQNRFGGVANCTAEMAHVRRNF
TNMCNWIKSQKEGRLAKCGRFNEVVYGEWNNNELEAKC*
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spliced messenger RNA

>Gcaud2482.t1 ID=Gcaud2482.t1|Name=Gcaud2482.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1617bp|location=Sequence derived from alignment at NODE_986_length_15474_cov_4.763960:1188..3239- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGTGCAGTCGTTGACGGAAAGAGAGCCAGCAGGAAAAGAAGTAT
AGAACGGCGTGTTCTGCGTGGGCTTCTTTGTACAACCTCTACCGCAAAAG
AGGTTCAGGTACTTGTAAATGAAGGTCATCAATACGTTTCTTCACCAACT
GCAACCGAAGAAGAAGAAATCGAAGGGATTGAAAAACAGTTGTCGAATAT
TAATGCACTGGAAGAAGCAAAATCAGCGCCAGAGAATGCTTCGTTGGAAA
GACTCATCCCGGTCCAACCAGATGTAGTTCAATCCAATAATGAGAACGAA
TACAAGTGCAACATAATGAACTGTGTTATTGATTCTCCTGGATCAAGTGG
TACTGCTACAGGACATAACTGTTCGTCGTGCAACCGGGGTGTTCATTTAA
TATGCTGCATTCGCGTCTTGCGCATAGAAGTTACGGACGAAAACACTGCA
TTATACTGTTCGTCAGGCTATGAAAGCAATACTCAAATTTCGGGCGAAAA
CACCCAGAGACAGTCAAGTATTGTTGGTGAAAAGCGACGCGGGTCTGAAG
GGACGGCTCCAAGTAAAGCAGAGAAAGGAATATGGAGTGGTTCTAGTGCA
ACATTGTTTGAAGAAGCGAGAAAGGATTGGAACTTTTTACTGAGTAACGG
GACTATCCCTGGTGCCATTTCGCAGCTTCGCCGAAGTTCTTTCTTGCAAA
TTGTCCCGATTCTCACTCGCGGAGAACAAAAACGCAAAGCCGCAGTAGAC
TACGTTTTGGGTATACTGGTCTTTGATAATTTACGTACTGTGCGCGAAAT
TATTGATGGCAAAGTTCGAGAGCCTGATATCCAACATCTCTGTCATGGTC
AGATTGATGCAATTGAAGAATATCTGAAGTTTTCCTACCTGAAGCACATC
GGATCAGGCCAAGACGTGCTGCATTGTCCAAAAATTGCACTTGAGACTGC
CTTGGGGACAGATCAAAATCGACAAGGATCTCGAGACCCGCTTCGGAGTA
CTTGTCGTCAATGCATGATGTCATTTCAAGTGATTGAGAATGAAGACATA
CAGCAGTTTTATTTTAGGCCCATCCAGTGGACATTAACGAAGGGCGAGCT
GCTCACTATTCCTCGTGTCTTCTTCACTGATGTCGGAGTCGGAGTTTGTT
GCACACTGGATGCTATTTTGGCCAGAACAAAAGCTGAACTATCATCCCTG
AAATCGTTTTATCTGCTGTCCGACAATGCCAAGTGTTATCAAAATGACCT
TATTCCAGTTCTTGCGCCATTCATTTCCAAGTCTCACTCATTGTTCATGA
CAGGCTTTGTACATTTCGAGACACAACGTGAGAAGAGTCTTGTACATGCA
CAATTTGCTCTTGATATGAGGCATATCAATCGCTACGGTGACCAAACCAG
AAATGATGTCACAACACTGGCAGACATTGTCATGGCACAGAACCGTTTTG
GCGGGGTTGCAAATTGCACTGCGGAGATGGCACATGTGCGCAGAAACTTT
ACAAATATGTGCAACTGGATCAAGTCTCAGAAAGAAGGGCGTCTAGCCAA
ATGTGGTAGATTTAACGAAGTTGTGTACGGCGAATGGAATAACAATGAAT
TGGAGGCAAAATGCTAA
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protein sequence of Gcaud2482.t1

>Gcaud2482.t1 ID=Gcaud2482.t1|Name=Gcaud2482.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=539bp
MRGAVVDGKRASRKRSIERRVLRGLLCTTSTAKEVQVLVNEGHQYVSSPT
ATEEEEIEGIEKQLSNINALEEAKSAPENASLERLIPVQPDVVQSNNENE
YKCNIMNCVIDSPGSSGTATGHNCSSCNRGVHLICCIRVLRIEVTDENTA
LYCSSGYESNTQISGENTQRQSSIVGEKRRGSEGTAPSKAEKGIWSGSSA
TLFEEARKDWNFLLSNGTIPGAISQLRRSSFLQIVPILTRGEQKRKAAVD
YVLGILVFDNLRTVREIIDGKVREPDIQHLCHGQIDAIEEYLKFSYLKHI
GSGQDVLHCPKIALETALGTDQNRQGSRDPLRSTCRQCMMSFQVIENEDI
QQFYFRPIQWTLTKGELLTIPRVFFTDVGVGVCCTLDAILARTKAELSSL
KSFYLLSDNAKCYQNDLIPVLAPFISKSHSLFMTGFVHFETQREKSLVHA
QFALDMRHINRYGDQTRNDVTTLADIVMAQNRFGGVANCTAEMAHVRRNF
TNMCNWIKSQKEGRLAKCGRFNEVVYGEWNNNELEAKC*
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mRNA from alignment at NODE_986_length_15474_cov_4.763960:1188..3239-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2482.t1 ID=Gcaud2482.t1|Name=Gcaud2482.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2052bp|location=Sequence derived from alignment at NODE_986_length_15474_cov_4.763960:1188..3239- (Gracilaria caudata M_176_S67 male)
ATGCGAGGTGCAGTCGTTGACGGAAAGAGAGCCAGCAGGAAAAGAAGTAT
AGAACGGCGTGTTCTGCGTGGGCTTCTTTGTACAACCTCTACCGCAAAAG
AGGTTCAGGTACTTGTAAATGAAGGTCATCAATACGTTTCTTCACCAACT
GCAACCGAAGAAGAAGAAATCGAAGGGATTGAAAAACAGTTGTCGAATAT
TAATGCACTGGAAGAAGCAAAATCAGCGCCAGAGAATGCTTCGTTGGAAA
GACTCATCCCGGTCCAACCAGATGTAGTTCAATCCAATAATGAGAACGAA
TACAAGTGCAACATAATGAACTGTGTTATTGATTCTCCTGGATCAAGTGG
TACTGCTACAGGACATAACTGTTCGTCGTGCAACCGGGGTGTTCATTTAA
TATGCTGCATTCGCGTCTTGCGCATAGAAGTTACGGACGAAAACACTGCA
TTATACTGTTCGTCAGGCTATGAAAGCAATACTCAAATTTCGGGCGAAAA
CACCCAGAGACAGTCAAGTATTGTTGGTGAAAAGCGACGCGGGTCTGAAG
GGACGGCTCCAAGTAAAGCAGAGAAAGGAATATGGAGTGGTTCTAGTGCA
ACATTGTTTGAAGAAGCGAGAAAGGATTGGAACTTTTTACTGAGTAACGG
GACTATCCCTGTTAGCGTGTTACATGAAAGCGTTGCTCTGATGATGTTAT
CAGAAAGGCACTTTGCTTTTTATTCCGTCCAAGCAATGTCCAAGTTTTGT
CTTGGGATCAGAAGAGGATCAAAGTGAATGGGAAATGGAAATCGTTTCCT
GCCGTTTTACGGCGAGCTACAAAAGAGAGAATATACAGATAAGATATAGA
ATACAATCGTTCTCTTTGTCCTTATGTTGAGGGTGCCATTTCGCAGCTTC
GCCGAAGTTCTTTCTTGCAAATTGTCCCGATTCTCACTCGCGGAGAACAA
AAACGCAAAGCCGCAGTAGACTACGTTTTGGGTATACTGGTCTTTGATAA
TTTACGTACTGTGCGCGAAATTATTGATGGCAAAGTTCGAGAGCCTGATA
TCCAACATCTCTGTCATGGTCAGATTGATGCAATTGAAGAATATCTGAAG
TTTTCCTACCTGAAGCACATCGGATCAGGCCAAGACGTGCTGCATTGTCC
AAAAATTGCACTTGAGACTGCCTTGGGGACAGATCAAAATCGACAAGGAT
CTCGAGACCCGCTTCGGAGTACTTGTCGTCAATGCATGATGTCATTTCAA
GTGATTGAGAATGAAGACATACAGCAGTTTTATTTTAGGCCCATCCAGTG
GACATTAACGAAGGGCGAGGTATGCGGATCGGGATACCGCATACGTAAGT
AGAGCTAAAATAAGACTTAACAAACTATAGAAGAAAGAAATGACATGTGA
AATAAAGAAAGGGCACAAAGCGGGGTTGGGGTCTGGGAGAGAAAAAGACA
TGCCAGAGAAGGAGACTGAGGACGCGAGCTCAGCGAGCTCACATCCTTCA
ATGGTACGCTCGGCATGCTGTGAGAAATGACAGCTGCTCACTATTCCTCG
TGTCTTCTTCACTGATGTCGGAGTCGGAGTTTGTTGCACACTGGATGCTA
TTTTGGCCAGAACAAAAGCTGAACTATCATCCCTGAAATCGTTTTATCTG
CTGTCCGACAATGCCAAGTGTTATCAAAATGACCTTATTCCAGTTCTTGC
GCCATTCATTTCCAAGTCTCACTCATTGTTCATGACAGGCTTTGTACATT
TCGAGACACAACGTGAGAAGAGTCTTGTACATGCACAATTTGCTCTTGAT
ATGAGGCATATCAATCGCTACGGTGACCAAACCAGAAATGATGTCACAAC
ACTGGCAGACATTGTCATGGCACAGAACCGTTTTGGCGGGGTTGCAAATT
GCACTGCGGAGATGGCACATGTGCGCAGAAACTTTACAAATATGTGCAAC
TGGATCAAGTCTCAGAAAGAAGGGCGTCTAGCCAAATGTGGTAGATTTAA
CGAAGTTGTGTACGGCGAATGGAATAACAATGAATTGGAGGCAAAATGCT
AA
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Coding sequence (CDS) from alignment at NODE_986_length_15474_cov_4.763960:1188..3239-

>Gcaud2482.t1 ID=Gcaud2482.t1|Name=Gcaud2482.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1617bp|location=Sequence derived from alignment at NODE_986_length_15474_cov_4.763960:1188..3239- (Gracilaria caudata M_176_S67 male)
ATGCGAGGTGCAGTCGTTGACGGAAAGAGAGCCAGCAGGAAAAGAAGTAT
AGAACGGCGTGTTCTGCGTGGGCTTCTTTGTACAACCTCTACCGCAAAAG
AGGTTCAGGTACTTGTAAATGAAGGTCATCAATACGTTTCTTCACCAACT
GCAACCGAAGAAGAAGAAATCGAAGGGATTGAAAAACAGTTGTCGAATAT
TAATGCACTGGAAGAAGCAAAATCAGCGCCAGAGAATGCTTCGTTGGAAA
GACTCATCCCGGTCCAACCAGATGTAGTTCAATCCAATAATGAGAACGAA
TACAAGTGCAACATAATGAACTGTGTTATTGATTCTCCTGGATCAAGTGG
TACTGCTACAGGACATAACTGTTCGTCGTGCAACCGGGGTGTTCATTTAA
TATGCTGCATTCGCGTCTTGCGCATAGAAGTTACGGACGAAAACACTGCA
TTATACTGTTCGTCAGGCTATGAAAGCAATACTCAAATTTCGGGCGAAAA
CACCCAGAGACAGTCAAGTATTGTTGGTGAAAAGCGACGCGGGTCTGAAG
GGACGGCTCCAAGTAAAGCAGAGAAAGGAATATGGAGTGGTTCTAGTGCA
ACATTGTTTGAAGAAGCGAGAAAGGATTGGAACTTTTTACTGAGTAACGG
GACTATCCCTGGTGCCATTTCGCAGCTTCGCCGAAGTTCTTTCTTGCAAA
TTGTCCCGATTCTCACTCGCGGAGAACAAAAACGCAAAGCCGCAGTAGAC
TACGTTTTGGGTATACTGGTCTTTGATAATTTACGTACTGTGCGCGAAAT
TATTGATGGCAAAGTTCGAGAGCCTGATATCCAACATCTCTGTCATGGTC
AGATTGATGCAATTGAAGAATATCTGAAGTTTTCCTACCTGAAGCACATC
GGATCAGGCCAAGACGTGCTGCATTGTCCAAAAATTGCACTTGAGACTGC
CTTGGGGACAGATCAAAATCGACAAGGATCTCGAGACCCGCTTCGGAGTA
CTTGTCGTCAATGCATGATGTCATTTCAAGTGATTGAGAATGAAGACATA
CAGCAGTTTTATTTTAGGCCCATCCAGTGGACATTAACGAAGGGCGAGCT
GCTCACTATTCCTCGTGTCTTCTTCACTGATGTCGGAGTCGGAGTTTGTT
GCACACTGGATGCTATTTTGGCCAGAACAAAAGCTGAACTATCATCCCTG
AAATCGTTTTATCTGCTGTCCGACAATGCCAAGTGTTATCAAAATGACCT
TATTCCAGTTCTTGCGCCATTCATTTCCAAGTCTCACTCATTGTTCATGA
CAGGCTTTGTACATTTCGAGACACAACGTGAGAAGAGTCTTGTACATGCA
CAATTTGCTCTTGATATGAGGCATATCAATCGCTACGGTGACCAAACCAG
AAATGATGTCACAACACTGGCAGACATTGTCATGGCACAGAACCGTTTTG
GCGGGGTTGCAAATTGCACTGCGGAGATGGCACATGTGCGCAGAAACTTT
ACAAATATGTGCAACTGGATCAAGTCTCAGAAAGAAGGGCGTCTAGCCAA
ATGTGGTAGATTTAACGAAGTTGTGTACGGCGAATGGAATAACAATGAAT
TGGAGGCAAAATGCTAA
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