Gcaud2480.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2480.t1
Unique Name	Gcaud2480.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	456

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1634_length_9365_cov_4.623571	contig	NODE_1634_length_9365_cov_4.623571:4623..7103 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT075CT
PFAMs	PDZ_2,Trypsin_2
Max annot lvl	2759\|Eukaryota
Evalue	1.34e-131
EggNOG OGs	COG0265@1\|root,KOG1320@2759\|Eukaryota
Description	serine-type endopeptidase activity
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2480	Gcaud2480	Gracilaria caudata M_176_S67 male	gene	NODE_1634_length_9365_cov_4.623571 4623..7103 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2480.t1	Gcaud2480.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1634_length_9365_cov_4.623571 4623..7103 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2480.t1.stop1	Gcaud2480.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1634_length_9365_cov_4.623571 4623..4625 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2480.t1.CDS1	Gcaud2480.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1634_length_9365_cov_4.623571 4623..5860 -
Gcaud2480.t1.CDS2	Gcaud2480.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1634_length_9365_cov_4.623571 6056..6119 -
Gcaud2480.t1.CDS3	Gcaud2480.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1634_length_9365_cov_4.623571 6922..6943 -
Gcaud2480.t1.CDS4	Gcaud2480.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_1634_length_9365_cov_4.623571 7060..7103 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2480.t1.exon1	Gcaud2480.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1634_length_9365_cov_4.623571 4623..5860 -
Gcaud2480.t1.exon2	Gcaud2480.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1634_length_9365_cov_4.623571 6056..6119 -
Gcaud2480.t1.exon3	Gcaud2480.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1634_length_9365_cov_4.623571 6922..6943 -
Gcaud2480.t1.exon4	Gcaud2480.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_1634_length_9365_cov_4.623571 7060..7103 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2480.t1.intron1	Gcaud2480.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1634_length_9365_cov_4.623571 5861..6055 -
Gcaud2480.t1.intron2	Gcaud2480.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1634_length_9365_cov_4.623571 6120..6921 -
Gcaud2480.t1.intron3	Gcaud2480.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_1634_length_9365_cov_4.623571 6944..7059 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2480.t1.start1	Gcaud2480.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1634_length_9365_cov_4.623571 7101..7103 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1634_length_9365_cov_4.623571:4623..7103-
coding sequence from alignment at NODE_1634_length_9365_cov_4.623571:4623..7103-

mRNA sequence

>Gcaud2480.t1 ID=Gcaud2480.t1|Name=Gcaud2480.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=456bp
MGGFLATAQVPMIFRGRLLNQELDLPTSEIYGFIPHANLTKGKHKCASPW
PRICVAHQRTSPTHNAVWRNGAFMRVDTQRASERLAALAAGVILGACSVA
AVDNLRLLDDNSVQAYVQTSPQTSADSLSDYNPSEVSVISLFERATKSVA
FVTTYTESRSGFSLNPMETPAGTGSGIVWDKQGRIVTNFHVIRAASGAKI
TLANKKTYDAELVGTSADDDVAVLKIKAPSEELDPVDVGSSGNLRVGQMT
YAIGNPFGLDHTLTTGVLSGLGREMKSPTGRTISNVIQTEASINPGNSGG
PLIDARGRLIGMNTAIYSPSGASAGVGFAIPVDTLKVIANALIENGRIVR
PVIGISYLESSQARALGISKGVLVLDVPEGSEAERAGLRGTSRMTFGSIE
LGDIIIGIDDDDVSNEGDLFKALDKHKVGDLVKIRVMNNSDGERKLLLKL
SASQR*

spliced messenger RNA

>Gcaud2480.t1 ID=Gcaud2480.t1|Name=Gcaud2480.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:4623..7103- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGGTTTCTTGCGACCGCACAGGTACCCATGATATTTAGAGGGAG
ACTCTTAAACCAAGAGCTTGATCTCCCGACATCTGAGATTTATGGCTTCA
TTCCCCATGCAAACCTTACCAAGGGTAAACATAAATGCGCTTCGCCCTGG
CCTCGGATATGCGTGGCACACCAACGCACATCGCCTACTCATAACGCCGT
ATGGCGCAATGGTGCTTTCATGCGTGTCGATACACAACGCGCGTCAGAGC
GACTGGCTGCACTTGCCGCGGGTGTTATTCTAGGGGCATGTTCAGTGGCA
GCAGTTGACAACCTACGTCTACTGGACGACAACTCTGTTCAAGCATACGT
GCAAACATCACCTCAGACCTCAGCTGATAGCCTTTCGGACTACAATCCAT
CGGAGGTGTCTGTCATATCTCTTTTTGAAAGGGCCACCAAATCTGTTGCA
TTTGTTACTACTTACACGGAGTCAAGGTCTGGGTTTTCTCTCAACCCGAT
GGAAACTCCCGCCGGTACTGGAAGCGGAATCGTGTGGGATAAACAAGGGC
GCATTGTGACAAACTTTCATGTAATTAGAGCTGCAAGCGGTGCAAAGATC
ACACTAGCAAACAAAAAAACGTATGACGCAGAACTTGTTGGTACCTCCGC
TGACGATGACGTAGCCGTTCTAAAGATCAAAGCGCCTTCAGAAGAACTTG
ATCCCGTTGACGTAGGCAGTAGCGGCAATCTGCGAGTTGGGCAAATGACC
TACGCGATTGGGAACCCATTTGGATTAGATCATACCTTGACTACAGGGGT
CCTCTCTGGGTTAGGACGTGAAATGAAAAGTCCCACAGGTCGCACTATTT
CAAACGTGATCCAAACTGAAGCGAGTATTAATCCAGGAAACAGCGGAGGT
CCTTTAATTGACGCTAGGGGCAGGCTGATTGGCATGAACACTGCCATATA
CTCTCCGAGTGGCGCTTCGGCAGGTGTTGGATTCGCTATTCCTGTCGACA
CTCTCAAAGTTATTGCGAATGCACTCATTGAAAATGGTCGAATAGTGCGG
CCTGTAATTGGAATCAGCTACCTCGAAAGCAGTCAAGCTCGAGCCCTTGG
AATTTCTAAAGGAGTGCTGGTGTTAGATGTTCCGGAGGGAAGTGAGGCAG
AAAGAGCGGGACTGAGAGGTACCTCGCGCATGACGTTCGGAAGCATTGAA
CTGGGGGATATCATAATCGGCATTGATGATGACGACGTGAGCAACGAAGG
TGATTTGTTCAAAGCTTTGGATAAACACAAGGTGGGTGATTTGGTAAAGA
TCCGGGTGATGAATAACTCGGATGGAGAACGGAAGCTGCTGCTGAAACTA
TCAGCCTCACAAAGGTGA

protein sequence of Gcaud2480.t1

>Gcaud2480.t1 ID=Gcaud2480.t1|Name=Gcaud2480.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=456bp
MGGFLATAQVPMIFRGRLLNQELDLPTSEIYGFIPHANLTKGKHKCASPW
PRICVAHQRTSPTHNAVWRNGAFMRVDTQRASERLAALAAGVILGACSVA
AVDNLRLLDDNSVQAYVQTSPQTSADSLSDYNPSEVSVISLFERATKSVA
FVTTYTESRSGFSLNPMETPAGTGSGIVWDKQGRIVTNFHVIRAASGAKI
TLANKKTYDAELVGTSADDDVAVLKIKAPSEELDPVDVGSSGNLRVGQMT
YAIGNPFGLDHTLTTGVLSGLGREMKSPTGRTISNVIQTEASINPGNSGG
PLIDARGRLIGMNTAIYSPSGASAGVGFAIPVDTLKVIANALIENGRIVR
PVIGISYLESSQARALGISKGVLVLDVPEGSEAERAGLRGTSRMTFGSIE
LGDIIIGIDDDDVSNEGDLFKALDKHKVGDLVKIRVMNNSDGERKLLLKL
SASQR*

mRNA from alignment at NODE_1634_length_9365_cov_4.623571:4623..7103-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2480.t1 ID=Gcaud2480.t1|Name=Gcaud2480.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2481bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:4623..7103- (Gracilaria caudata M_176_S67 male)
ATGGGTGGGTTTCTTGCGACCGCACAGGTACCCATGATATTTAGGTCAGT
TACACTCCTCGAGTATGATCAGCAAACCCGTCATCGTCGAAAGTCAGCGA
ACTAGGGATTGACTGTTTTGTACAACGCTAATCTGAGCGGCAATACCATT
AACCGTGCAGAGGGAGACTCTTAAACCAAGAGGTAGCTTCCGTCTGTCCC
AACATTTGTATCTATCATTTAGCTCTTACAACTTGCGGCTTCACTGCAAC
AAAGTCGCCTGAACCCCACTGCTAAGAGTTGTAAGCATATCATATTGCTT
CAAGTGACTATACCATGCCTGACAACTACGCAATGACTGGCTCTTCGCAA
CGGACTCTGGAAAGCAAGCCGAGAGAACTTCGCGAATCTTTTCGAGCAAA
GATAATGCGCAAATTACGCAAGACAACATCTGGAAATTCGACAAGCTGCG
TTTATGCGCCGGCCTGGTGTGAGAGAAACAAATGGAGCCGACATTCTGTC
AAAGCAACCGACCATGTAAGCGGAGCGCGACTTAAAAACCTGCGGAGTGA
CGATTCCGAAGCAACTTCTCCCGTTCTACGAAAAGAATACGAATGTGAAC
GAAGAATACAAATGCTTTGGGAAGAACAAGGAGATGAATCTAGATCGCGA
TTATTCTGGTCGCTCGTCAACATAGAGAACAACGGTAATGATTGAAAGCA
ACAAATCGGGTGAAACCCCAGTTCTTGAAGAGGAATGAACCAAATAATTC
AAGTATCGGCGCTCTACACAAGAAACAGGAAGGCACTCCTGTATGCCGTG
AGAACAGAATTCCATGTACTTCACTTCTGAACGCAGCTAGAAAAGAGTTG
CAACTAGCTTCAAGCGTAGTAAAGTTACAGTACTACGGTTTGAATCTGGG
TAGCGTTCTACCCTTGTACATCACTGACCATCACTTTTTTTATACGTAGC
TTTGAATTCGTGGTTGCTCAAAATCGGTGAATAGCTTGATCTCCCGACAT
CTGAGATTTATGGCTTCATTCCCCATGCAAACCTTACCAAGGGTAAACGT
ACGTTAGCAAGCTTCGTCTTATTCGACAGCATTTATTAGCGGAGGAAGAG
CAACGCTTTGCCGCGTGCATTTTGACAGTTTTGTTGACCATCCGTCCTTT
TCTCCGTGGCGCCCTTGCCACCGATTTCAAACTCGACGGAAATGTCATTC
GTTGGTTTTATCCCAAATGTCGGGACTCCCTTCAAACTACAAGATAAATG
CGCTTCGCCCTGGCCTCGGATATGCGTGGCACACCAACGCACATCGCCTA
CTCATAACGCCGTATGGCGCAATGGTGCTTTCATGCGTGTCGATACACAA
CGCGCGTCAGAGCGACTGGCTGCACTTGCCGCGGGTGTTATTCTAGGGGC
ATGTTCAGTGGCAGCAGTTGACAACCTACGTCTACTGGACGACAACTCTG
TTCAAGCATACGTGCAAACATCACCTCAGACCTCAGCTGATAGCCTTTCG
GACTACAATCCATCGGAGGTGTCTGTCATATCTCTTTTTGAAAGGGCCAC
CAAATCTGTTGCATTTGTTACTACTTACACGGAGTCAAGGTCTGGGTTTT
CTCTCAACCCGATGGAAACTCCCGCCGGTACTGGAAGCGGAATCGTGTGG
GATAAACAAGGGCGCATTGTGACAAACTTTCATGTAATTAGAGCTGCAAG
CGGTGCAAAGATCACACTAGCAAACAAAAAAACGTATGACGCAGAACTTG
TTGGTACCTCCGCTGACGATGACGTAGCCGTTCTAAAGATCAAAGCGCCT
TCAGAAGAACTTGATCCCGTTGACGTAGGCAGTAGCGGCAATCTGCGAGT
TGGGCAAATGACCTACGCGATTGGGAACCCATTTGGATTAGATCATACCT
TGACTACAGGGGTCCTCTCTGGGTTAGGACGTGAAATGAAAAGTCCCACA
GGTCGCACTATTTCAAACGTGATCCAAACTGAAGCGAGTATTAATCCAGG
AAACAGCGGAGGTCCTTTAATTGACGCTAGGGGCAGGCTGATTGGCATGA
ACACTGCCATATACTCTCCGAGTGGCGCTTCGGCAGGTGTTGGATTCGCT
ATTCCTGTCGACACTCTCAAAGTTATTGCGAATGCACTCATTGAAAATGG
TCGAATAGTGCGGCCTGTAATTGGAATCAGCTACCTCGAAAGCAGTCAAG
CTCGAGCCCTTGGAATTTCTAAAGGAGTGCTGGTGTTAGATGTTCCGGAG
GGAAGTGAGGCAGAAAGAGCGGGACTGAGAGGTACCTCGCGCATGACGTT
CGGAAGCATTGAACTGGGGGATATCATAATCGGCATTGATGATGACGACG
TGAGCAACGAAGGTGATTTGTTCAAAGCTTTGGATAAACACAAGGTGGGT
GATTTGGTAAAGATCCGGGTGATGAATAACTCGGATGGAGAACGGAAGCT
GCTGCTGAAACTATCAGCCTCACAAAGGTGA

Coding sequence (CDS) from alignment at NODE_1634_length_9365_cov_4.623571:4623..7103-

>Gcaud2480.t1 ID=Gcaud2480.t1|Name=Gcaud2480.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1368bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:4623..7103- (Gracilaria caudata M_176_S67 male)
ATGGGTGGGTTTCTTGCGACCGCACAGGTACCCATGATATTTAGAGGGAG
ACTCTTAAACCAAGAGCTTGATCTCCCGACATCTGAGATTTATGGCTTCA
TTCCCCATGCAAACCTTACCAAGGGTAAACATAAATGCGCTTCGCCCTGG
CCTCGGATATGCGTGGCACACCAACGCACATCGCCTACTCATAACGCCGT
ATGGCGCAATGGTGCTTTCATGCGTGTCGATACACAACGCGCGTCAGAGC
GACTGGCTGCACTTGCCGCGGGTGTTATTCTAGGGGCATGTTCAGTGGCA
GCAGTTGACAACCTACGTCTACTGGACGACAACTCTGTTCAAGCATACGT
GCAAACATCACCTCAGACCTCAGCTGATAGCCTTTCGGACTACAATCCAT
CGGAGGTGTCTGTCATATCTCTTTTTGAAAGGGCCACCAAATCTGTTGCA
TTTGTTACTACTTACACGGAGTCAAGGTCTGGGTTTTCTCTCAACCCGAT
GGAAACTCCCGCCGGTACTGGAAGCGGAATCGTGTGGGATAAACAAGGGC
GCATTGTGACAAACTTTCATGTAATTAGAGCTGCAAGCGGTGCAAAGATC
ACACTAGCAAACAAAAAAACGTATGACGCAGAACTTGTTGGTACCTCCGC
TGACGATGACGTAGCCGTTCTAAAGATCAAAGCGCCTTCAGAAGAACTTG
ATCCCGTTGACGTAGGCAGTAGCGGCAATCTGCGAGTTGGGCAAATGACC
TACGCGATTGGGAACCCATTTGGATTAGATCATACCTTGACTACAGGGGT
CCTCTCTGGGTTAGGACGTGAAATGAAAAGTCCCACAGGTCGCACTATTT
CAAACGTGATCCAAACTGAAGCGAGTATTAATCCAGGAAACAGCGGAGGT
CCTTTAATTGACGCTAGGGGCAGGCTGATTGGCATGAACACTGCCATATA
CTCTCCGAGTGGCGCTTCGGCAGGTGTTGGATTCGCTATTCCTGTCGACA
CTCTCAAAGTTATTGCGAATGCACTCATTGAAAATGGTCGAATAGTGCGG
CCTGTAATTGGAATCAGCTACCTCGAAAGCAGTCAAGCTCGAGCCCTTGG
AATTTCTAAAGGAGTGCTGGTGTTAGATGTTCCGGAGGGAAGTGAGGCAG
AAAGAGCGGGACTGAGAGGTACCTCGCGCATGACGTTCGGAAGCATTGAA
CTGGGGGATATCATAATCGGCATTGATGATGACGACGTGAGCAACGAAGG
TGATTTGTTCAAAGCTTTGGATAAACACAAGGTGGGTGATTTGGTAAAGA
TCCGGGTGATGAATAACTCGGATGGAGAACGGAAGCTGCTGCTGAAACTA
TCAGCCTCACAAAGGTGA