Gcaud2479.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2479.t1
Unique Name	Gcaud2479.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1634_length_9365_cov_4.623571	contig	NODE_1634_length_9365_cov_4.623571:3455..4456 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	39416.CAZ81670
Preferred name	BET2
PFAMs	Prenyltrans
Max annot lvl	4751\|Fungi
KEGG ko	ko:K05956
GOs	GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008318,GO:0009987,GO:0015031,GO:0015833,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0031267,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
Evalue	2.71e-81
EggNOG OGs	COG5029@1\|root,KOG0366@2759\|Eukaryota,38DTQ@33154\|Opisthokonta,3NTZW@4751\|Fungi,3QKS7@4890\|Ascomycota
EC	2.5.1.60
Description	Beta subunit
COG category	O
BRITE	ko00000,ko01000,ko01006,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2479	Gcaud2479	Gracilaria caudata M_176_S67 male	gene	NODE_1634_length_9365_cov_4.623571 3455..4456 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2479.t1.start1	Gcaud2479.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1634_length_9365_cov_4.623571 3455..3457 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2479.t1.CDS1	Gcaud2479.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1634_length_9365_cov_4.623571 3455..4456 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2479.t1.exon1	Gcaud2479.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1634_length_9365_cov_4.623571 3455..4456 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2479.t1.stop1	Gcaud2479.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1634_length_9365_cov_4.623571 4454..4456 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2479.t1	Gcaud2479.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1634_length_9365_cov_4.623571 3455..4456 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1634_length_9365_cov_4.623571:3455..4456+
coding sequence from alignment at NODE_1634_length_9365_cov_4.623571:3455..4456+

mRNA sequence

>Gcaud2479.t1 ID=Gcaud2479.t1|Name=Gcaud2479.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=334bp
MDTPKQKATAIDSLDLKKHVAYIVGLEKKTKTTDALYFTDHKRLSGVYWA
ISSLSLMHRIEILPHQPILDYVMSCYHPQVGAFAGNSDQDPHLLYTLSAV
QILAIYDRLDLIDADHIMNHIASLQQSDGSFAGDKWGEIDTRFSYCALLC
ARILQRTHMIDIPNAVQYVLSCQNFDGGFGCIAGAESHAGQVFCCVGALC
LADALDRIQEDEKERLALWLCERQLPCGGLNGRPDKLEDVCYSWWVLSSL
FMLGHVDWIDANKLTDFIVRSADDVEGGFADRPGDMPDVFHTFFALAGLS
LLHNKNLAVIDAAWALTEDVVHRLKGTNPEHAT*

spliced messenger RNA

>Gcaud2479.t1 ID=Gcaud2479.t1|Name=Gcaud2479.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:3455..4456+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACTCCGAAGCAGAAGGCCACCGCAATCGACTCTCTTGACCTGAA
GAAGCACGTAGCTTACATTGTCGGACTGGAGAAAAAGACAAAGACTACCG
ACGCACTCTACTTCACAGATCATAAGCGATTGTCTGGTGTGTACTGGGCC
ATTTCCTCGCTAAGCCTCATGCATAGAATCGAGATTCTCCCACATCAACC
TATCTTAGACTACGTGATGAGCTGTTATCACCCGCAAGTAGGAGCTTTTG
CAGGAAATAGTGATCAAGATCCCCATTTACTTTACACCTTGTCCGCTGTT
CAAATCCTGGCCATATATGATCGTCTTGATCTTATAGACGCGGATCACAT
CATGAATCATATTGCGTCCTTGCAACAGAGCGACGGCAGTTTCGCGGGTG
ATAAGTGGGGCGAGATTGATACTCGATTCAGTTACTGTGCTCTACTTTGC
GCCAGAATTCTACAAAGGACGCATATGATCGATATACCTAATGCAGTACA
ATACGTGTTAAGCTGCCAAAACTTCGACGGTGGCTTTGGATGTATTGCTG
GTGCGGAAAGTCATGCAGGTCAGGTCTTCTGTTGTGTGGGTGCACTTTGT
TTGGCAGACGCGTTAGATCGAATACAAGAAGACGAAAAAGAAAGGTTAGC
CCTCTGGCTATGTGAACGACAATTACCGTGTGGTGGACTCAATGGTAGAC
CCGACAAACTTGAGGACGTATGTTACTCTTGGTGGGTGTTATCAAGCTTG
TTTATGTTAGGTCACGTCGATTGGATTGATGCAAACAAGCTCACTGATTT
CATAGTCCGGAGCGCAGATGATGTTGAAGGTGGATTTGCAGACAGGCCTG
GAGATATGCCTGATGTGTTTCATACCTTTTTCGCATTGGCTGGTCTTTCG
TTGTTGCATAACAAAAACCTAGCGGTAATCGATGCTGCATGGGCGCTGAC
TGAAGATGTTGTTCATAGACTGAAAGGGACTAATCCTGAACACGCAACAT
GA

protein sequence of Gcaud2479.t1

>Gcaud2479.t1 ID=Gcaud2479.t1|Name=Gcaud2479.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=334bp
MDTPKQKATAIDSLDLKKHVAYIVGLEKKTKTTDALYFTDHKRLSGVYWA
ISSLSLMHRIEILPHQPILDYVMSCYHPQVGAFAGNSDQDPHLLYTLSAV
QILAIYDRLDLIDADHIMNHIASLQQSDGSFAGDKWGEIDTRFSYCALLC
ARILQRTHMIDIPNAVQYVLSCQNFDGGFGCIAGAESHAGQVFCCVGALC
LADALDRIQEDEKERLALWLCERQLPCGGLNGRPDKLEDVCYSWWVLSSL
FMLGHVDWIDANKLTDFIVRSADDVEGGFADRPGDMPDVFHTFFALAGLS
LLHNKNLAVIDAAWALTEDVVHRLKGTNPEHAT*

mRNA from alignment at NODE_1634_length_9365_cov_4.623571:3455..4456+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2479.t1 ID=Gcaud2479.t1|Name=Gcaud2479.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:3455..4456+ (Gracilaria caudata M_176_S67 male)
ATGGATACTCCGAAGCAGAAGGCCACCGCAATCGACTCTCTTGACCTGAA
GAAGCACGTAGCTTACATTGTCGGACTGGAGAAAAAGACAAAGACTACCG
ACGCACTCTACTTCACAGATCATAAGCGATTGTCTGGTGTGTACTGGGCC
ATTTCCTCGCTAAGCCTCATGCATAGAATCGAGATTCTCCCACATCAACC
TATCTTAGACTACGTGATGAGCTGTTATCACCCGCAAGTAGGAGCTTTTG
CAGGAAATAGTGATCAAGATCCCCATTTACTTTACACCTTGTCCGCTGTT
CAAATCCTGGCCATATATGATCGTCTTGATCTTATAGACGCGGATCACAT
CATGAATCATATTGCGTCCTTGCAACAGAGCGACGGCAGTTTCGCGGGTG
ATAAGTGGGGCGAGATTGATACTCGATTCAGTTACTGTGCTCTACTTTGC
GCCAGAATTCTACAAAGGACGCATATGATCGATATACCTAATGCAGTACA
ATACGTGTTAAGCTGCCAAAACTTCGACGGTGGCTTTGGATGTATTGCTG
GTGCGGAAAGTCATGCAGGTCAGGTCTTCTGTTGTGTGGGTGCACTTTGT
TTGGCAGACGCGTTAGATCGAATACAAGAAGACGAAAAAGAAAGGTTAGC
CCTCTGGCTATGTGAACGACAATTACCGTGTGGTGGACTCAATGGTAGAC
CCGACAAACTTGAGGACGTATGTTACTCTTGGTGGGTGTTATCAAGCTTG
TTTATGTTAGGTCACGTCGATTGGATTGATGCAAACAAGCTCACTGATTT
CATAGTCCGGAGCGCAGATGATGTTGAAGGTGGATTTGCAGACAGGCCTG
GAGATATGCCTGATGTGTTTCATACCTTTTTCGCATTGGCTGGTCTTTCG
TTGTTGCATAACAAAAACCTAGCGGTAATCGATGCTGCATGGGCGCTGAC
TGAAGATGTTGTTCATAGACTGAAAGGGACTAATCCTGAACACGCAACAT
GA

Coding sequence (CDS) from alignment at NODE_1634_length_9365_cov_4.623571:3455..4456+

>Gcaud2479.t1 ID=Gcaud2479.t1|Name=Gcaud2479.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1002bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:3455..4456+ (Gracilaria caudata M_176_S67 male)
ATGGATACTCCGAAGCAGAAGGCCACCGCAATCGACTCTCTTGACCTGAA
GAAGCACGTAGCTTACATTGTCGGACTGGAGAAAAAGACAAAGACTACCG
ACGCACTCTACTTCACAGATCATAAGCGATTGTCTGGTGTGTACTGGGCC
ATTTCCTCGCTAAGCCTCATGCATAGAATCGAGATTCTCCCACATCAACC
TATCTTAGACTACGTGATGAGCTGTTATCACCCGCAAGTAGGAGCTTTTG
CAGGAAATAGTGATCAAGATCCCCATTTACTTTACACCTTGTCCGCTGTT
CAAATCCTGGCCATATATGATCGTCTTGATCTTATAGACGCGGATCACAT
CATGAATCATATTGCGTCCTTGCAACAGAGCGACGGCAGTTTCGCGGGTG
ATAAGTGGGGCGAGATTGATACTCGATTCAGTTACTGTGCTCTACTTTGC
GCCAGAATTCTACAAAGGACGCATATGATCGATATACCTAATGCAGTACA
ATACGTGTTAAGCTGCCAAAACTTCGACGGTGGCTTTGGATGTATTGCTG
GTGCGGAAAGTCATGCAGGTCAGGTCTTCTGTTGTGTGGGTGCACTTTGT
TTGGCAGACGCGTTAGATCGAATACAAGAAGACGAAAAAGAAAGGTTAGC
CCTCTGGCTATGTGAACGACAATTACCGTGTGGTGGACTCAATGGTAGAC
CCGACAAACTTGAGGACGTATGTTACTCTTGGTGGGTGTTATCAAGCTTG
TTTATGTTAGGTCACGTCGATTGGATTGATGCAAACAAGCTCACTGATTT
CATAGTCCGGAGCGCAGATGATGTTGAAGGTGGATTTGCAGACAGGCCTG
GAGATATGCCTGATGTGTTTCATACCTTTTTCGCATTGGCTGGTCTTTCG
TTGTTGCATAACAAAAACCTAGCGGTAATCGATGCTGCATGGGCGCTGAC
TGAAGATGTTGTTCATAGACTGAAAGGGACTAATCCTGAACACGCAACAT
GA