Gcaud2478.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2478.t1
Unique Name	Gcaud2478.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	494

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1634_length_9365_cov_4.623571	contig	NODE_1634_length_9365_cov_4.623571:1479..2960 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010683347.1
PFAMs	Glyco_transf_92
Max annot lvl	35493\|Streptophyta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	2.93e-13
EggNOG OGs	28NUN@1\|root,2QVEP@2759\|Eukaryota,37JGF@33090\|Viridiplantae,3GXC6@35493\|Streptophyta
Description	UPF0392 protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2478	Gcaud2478	Gracilaria caudata M_176_S67 male	gene	NODE_1634_length_9365_cov_4.623571 1479..2960 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2478.t1.start1	Gcaud2478.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1634_length_9365_cov_4.623571 1479..1481 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2478.t1.CDS1	Gcaud2478.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1634_length_9365_cov_4.623571 1479..2960 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2478.t1.exon1	Gcaud2478.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1634_length_9365_cov_4.623571 1479..2960 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2478.t1.stop1	Gcaud2478.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1634_length_9365_cov_4.623571 2958..2960 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2478.t1	Gcaud2478.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1634_length_9365_cov_4.623571 1479..2960 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1634_length_9365_cov_4.623571:1479..2960+
coding sequence from alignment at NODE_1634_length_9365_cov_4.623571:1479..2960+

mRNA sequence

>Gcaud2478.t1 ID=Gcaud2478.t1|Name=Gcaud2478.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=494bp
MMLKTRPSLLTKAAFLLFAFFIAVNLLNHLHVQAPPPLSPLLSHTLPKYP
PAVNDWKRPLTISLHAHLNQSLVRLTLFTTGVHTDTYGRTFSAVGCMVGH
QIVPAVETRPEMTVCLVHRSYLVHDVPLTVLLHYDQSLRDAINQTQYIKG
EQFTVYPQDIRVLPEGAASHADLPSNLAAVRTAVRWRHHMLDLPNKSRYQ
LCAMTAMRQYPFLLSDWMQYYRRMGVDYFYIYENNADAPLRQNVDPNFGE
VVHWPWSRSQMQSNNHFLLAAPNRCRFVVFFDADEYVMVGDPRRYALKRY
ILSRREEGYLQVVFHFLMMVNNGYVRRPKGSLPELYTLREKAQQIKQGKV
AIDTDFPWTWHRIHLVDGRGGKTYWNTTLELNPQSLRHNSMLVHYSKRSW
EDFVAKNAVGGASVMTAGRPKKVLDVEKPDEKYMAIEGEQFDGFRKRWER
VLERADSGCMQLERRNDNGQRCTQAYCLRSLFNRLRAMRCNFE*

spliced messenger RNA

>Gcaud2478.t1 ID=Gcaud2478.t1|Name=Gcaud2478.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:1479..2960+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTGAAGACACGTCCTTCCTTGCTCACCAAAGCAGCTTTCCTGCT
TTTTGCTTTCTTCATTGCAGTCAACCTTCTCAACCATCTTCACGTACAAG
CACCCCCTCCACTTTCTCCGCTTCTCTCGCACACGCTTCCTAAATATCCG
CCCGCGGTAAACGACTGGAAACGCCCTCTCACCATCTCGTTACACGCTCA
TCTCAATCAGTCGCTTGTACGACTCACATTGTTTACCACCGGTGTGCATA
CTGACACGTACGGTCGCACCTTCTCAGCTGTTGGTTGTATGGTCGGCCAC
CAAATTGTTCCCGCAGTCGAGACGCGTCCAGAGATGACTGTCTGTCTTGT
TCATCGTTCCTATCTTGTTCATGATGTTCCACTTACTGTTCTGCTTCACT
ATGACCAAAGTTTACGAGATGCAATCAATCAAACGCAGTATATCAAGGGG
GAGCAATTCACGGTGTATCCACAGGATATTCGGGTATTGCCCGAGGGAGC
GGCGTCTCATGCAGATTTGCCGTCTAACCTGGCCGCTGTGCGCACAGCTG
TTAGATGGCGACATCATATGCTGGATTTGCCAAACAAATCGCGATATCAA
CTTTGTGCGATGACGGCTATGCGACAATATCCATTCTTACTTTCCGACTG
GATGCAGTACTATCGACGAATGGGTGTCGATTACTTCTACATCTACGAGA
ACAACGCTGACGCCCCCCTGCGGCAGAATGTTGATCCGAACTTTGGAGAA
GTAGTGCACTGGCCCTGGTCTCGTTCTCAGATGCAAAGCAATAATCATTT
CTTGCTTGCCGCTCCGAATCGATGTAGATTTGTCGTGTTTTTTGATGCGG
ATGAGTATGTCATGGTTGGCGATCCACGACGTTATGCTTTGAAACGATAT
ATTTTGAGTCGCCGTGAGGAAGGATATCTACAAGTGGTGTTTCACTTTTT
GATGATGGTGAACAATGGTTACGTGAGACGTCCGAAGGGCAGTCTTCCGG
AGTTGTATACGCTACGAGAAAAAGCACAACAGATTAAACAAGGAAAAGTT
GCAATTGATACTGATTTTCCATGGACATGGCATCGAATTCATCTCGTGGA
CGGACGAGGCGGTAAAACGTATTGGAATACTACTTTAGAACTAAATCCGC
AAAGTCTGCGGCACAACTCGATGCTCGTACACTACTCCAAACGAAGCTGG
GAGGATTTTGTGGCGAAGAATGCGGTGGGAGGAGCGAGTGTTATGACCGC
TGGAAGACCGAAGAAAGTTCTGGATGTTGAGAAACCTGATGAGAAGTACA
TGGCCATAGAAGGCGAGCAATTTGATGGGTTCAGAAAACGGTGGGAACGA
GTGTTAGAGAGAGCAGATAGTGGGTGTATGCAACTGGAACGGCGGAATGA
TAATGGACAAAGGTGTACTCAGGCCTATTGTCTGCGCTCTCTTTTCAACC
GGTTAAGGGCGATGAGATGTAATTTTGAATAG

protein sequence of Gcaud2478.t1

>Gcaud2478.t1 ID=Gcaud2478.t1|Name=Gcaud2478.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=494bp
MMLKTRPSLLTKAAFLLFAFFIAVNLLNHLHVQAPPPLSPLLSHTLPKYP
PAVNDWKRPLTISLHAHLNQSLVRLTLFTTGVHTDTYGRTFSAVGCMVGH
QIVPAVETRPEMTVCLVHRSYLVHDVPLTVLLHYDQSLRDAINQTQYIKG
EQFTVYPQDIRVLPEGAASHADLPSNLAAVRTAVRWRHHMLDLPNKSRYQ
LCAMTAMRQYPFLLSDWMQYYRRMGVDYFYIYENNADAPLRQNVDPNFGE
VVHWPWSRSQMQSNNHFLLAAPNRCRFVVFFDADEYVMVGDPRRYALKRY
ILSRREEGYLQVVFHFLMMVNNGYVRRPKGSLPELYTLREKAQQIKQGKV
AIDTDFPWTWHRIHLVDGRGGKTYWNTTLELNPQSLRHNSMLVHYSKRSW
EDFVAKNAVGGASVMTAGRPKKVLDVEKPDEKYMAIEGEQFDGFRKRWER
VLERADSGCMQLERRNDNGQRCTQAYCLRSLFNRLRAMRCNFE*

mRNA from alignment at NODE_1634_length_9365_cov_4.623571:1479..2960+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2478.t1 ID=Gcaud2478.t1|Name=Gcaud2478.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:1479..2960+ (Gracilaria caudata M_176_S67 male)
ATGATGCTGAAGACACGTCCTTCCTTGCTCACCAAAGCAGCTTTCCTGCT
TTTTGCTTTCTTCATTGCAGTCAACCTTCTCAACCATCTTCACGTACAAG
CACCCCCTCCACTTTCTCCGCTTCTCTCGCACACGCTTCCTAAATATCCG
CCCGCGGTAAACGACTGGAAACGCCCTCTCACCATCTCGTTACACGCTCA
TCTCAATCAGTCGCTTGTACGACTCACATTGTTTACCACCGGTGTGCATA
CTGACACGTACGGTCGCACCTTCTCAGCTGTTGGTTGTATGGTCGGCCAC
CAAATTGTTCCCGCAGTCGAGACGCGTCCAGAGATGACTGTCTGTCTTGT
TCATCGTTCCTATCTTGTTCATGATGTTCCACTTACTGTTCTGCTTCACT
ATGACCAAAGTTTACGAGATGCAATCAATCAAACGCAGTATATCAAGGGG
GAGCAATTCACGGTGTATCCACAGGATATTCGGGTATTGCCCGAGGGAGC
GGCGTCTCATGCAGATTTGCCGTCTAACCTGGCCGCTGTGCGCACAGCTG
TTAGATGGCGACATCATATGCTGGATTTGCCAAACAAATCGCGATATCAA
CTTTGTGCGATGACGGCTATGCGACAATATCCATTCTTACTTTCCGACTG
GATGCAGTACTATCGACGAATGGGTGTCGATTACTTCTACATCTACGAGA
ACAACGCTGACGCCCCCCTGCGGCAGAATGTTGATCCGAACTTTGGAGAA
GTAGTGCACTGGCCCTGGTCTCGTTCTCAGATGCAAAGCAATAATCATTT
CTTGCTTGCCGCTCCGAATCGATGTAGATTTGTCGTGTTTTTTGATGCGG
ATGAGTATGTCATGGTTGGCGATCCACGACGTTATGCTTTGAAACGATAT
ATTTTGAGTCGCCGTGAGGAAGGATATCTACAAGTGGTGTTTCACTTTTT
GATGATGGTGAACAATGGTTACGTGAGACGTCCGAAGGGCAGTCTTCCGG
AGTTGTATACGCTACGAGAAAAAGCACAACAGATTAAACAAGGAAAAGTT
GCAATTGATACTGATTTTCCATGGACATGGCATCGAATTCATCTCGTGGA
CGGACGAGGCGGTAAAACGTATTGGAATACTACTTTAGAACTAAATCCGC
AAAGTCTGCGGCACAACTCGATGCTCGTACACTACTCCAAACGAAGCTGG
GAGGATTTTGTGGCGAAGAATGCGGTGGGAGGAGCGAGTGTTATGACCGC
TGGAAGACCGAAGAAAGTTCTGGATGTTGAGAAACCTGATGAGAAGTACA
TGGCCATAGAAGGCGAGCAATTTGATGGGTTCAGAAAACGGTGGGAACGA
GTGTTAGAGAGAGCAGATAGTGGGTGTATGCAACTGGAACGGCGGAATGA
TAATGGACAAAGGTGTACTCAGGCCTATTGTCTGCGCTCTCTTTTCAACC
GGTTAAGGGCGATGAGATGTAATTTTGAATAG

Coding sequence (CDS) from alignment at NODE_1634_length_9365_cov_4.623571:1479..2960+

>Gcaud2478.t1 ID=Gcaud2478.t1|Name=Gcaud2478.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1482bp|location=Sequence derived from alignment at NODE_1634_length_9365_cov_4.623571:1479..2960+ (Gracilaria caudata M_176_S67 male)
ATGATGCTGAAGACACGTCCTTCCTTGCTCACCAAAGCAGCTTTCCTGCT
TTTTGCTTTCTTCATTGCAGTCAACCTTCTCAACCATCTTCACGTACAAG
CACCCCCTCCACTTTCTCCGCTTCTCTCGCACACGCTTCCTAAATATCCG
CCCGCGGTAAACGACTGGAAACGCCCTCTCACCATCTCGTTACACGCTCA
TCTCAATCAGTCGCTTGTACGACTCACATTGTTTACCACCGGTGTGCATA
CTGACACGTACGGTCGCACCTTCTCAGCTGTTGGTTGTATGGTCGGCCAC
CAAATTGTTCCCGCAGTCGAGACGCGTCCAGAGATGACTGTCTGTCTTGT
TCATCGTTCCTATCTTGTTCATGATGTTCCACTTACTGTTCTGCTTCACT
ATGACCAAAGTTTACGAGATGCAATCAATCAAACGCAGTATATCAAGGGG
GAGCAATTCACGGTGTATCCACAGGATATTCGGGTATTGCCCGAGGGAGC
GGCGTCTCATGCAGATTTGCCGTCTAACCTGGCCGCTGTGCGCACAGCTG
TTAGATGGCGACATCATATGCTGGATTTGCCAAACAAATCGCGATATCAA
CTTTGTGCGATGACGGCTATGCGACAATATCCATTCTTACTTTCCGACTG
GATGCAGTACTATCGACGAATGGGTGTCGATTACTTCTACATCTACGAGA
ACAACGCTGACGCCCCCCTGCGGCAGAATGTTGATCCGAACTTTGGAGAA
GTAGTGCACTGGCCCTGGTCTCGTTCTCAGATGCAAAGCAATAATCATTT
CTTGCTTGCCGCTCCGAATCGATGTAGATTTGTCGTGTTTTTTGATGCGG
ATGAGTATGTCATGGTTGGCGATCCACGACGTTATGCTTTGAAACGATAT
ATTTTGAGTCGCCGTGAGGAAGGATATCTACAAGTGGTGTTTCACTTTTT
GATGATGGTGAACAATGGTTACGTGAGACGTCCGAAGGGCAGTCTTCCGG
AGTTGTATACGCTACGAGAAAAAGCACAACAGATTAAACAAGGAAAAGTT
GCAATTGATACTGATTTTCCATGGACATGGCATCGAATTCATCTCGTGGA
CGGACGAGGCGGTAAAACGTATTGGAATACTACTTTAGAACTAAATCCGC
AAAGTCTGCGGCACAACTCGATGCTCGTACACTACTCCAAACGAAGCTGG
GAGGATTTTGTGGCGAAGAATGCGGTGGGAGGAGCGAGTGTTATGACCGC
TGGAAGACCGAAGAAAGTTCTGGATGTTGAGAAACCTGATGAGAAGTACA
TGGCCATAGAAGGCGAGCAATTTGATGGGTTCAGAAAACGGTGGGAACGA
GTGTTAGAGAGAGCAGATAGTGGGTGTATGCAACTGGAACGGCGGAATGA
TAATGGACAAAGGTGTACTCAGGCCTATTGTCTGCGCTCTCTTTTCAACC
GGTTAAGGGCGATGAGATGTAATTTTGAATAG