Gcaud2477.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2477.t1
Unique NameGcaud2477.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1056_length_14488_cov_4.591929contigNODE_1056_length_14488_cov_4.591929:11931..13376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28985.XP_451947.1
Preferred nameALG1
PFAMsGlyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
Max annot lvl4751|Fungi
KEGG koko:K03842
KEGG ReactionR05972
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
GOsGO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016740,GO:0016757,GO:0016758,GO:0019187,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070085,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue3.43e-48
EggNOG OGsCOG0438@1|root,KOG2941@2759|Eukaryota,38CDI@33154|Opisthokonta,3NTXV@4751|Fungi,3QKMK@4890|Ascomycota,3RSCW@4891|Saccharomycetes,3RZSN@4893|Saccharomycetaceae
EC2.4.1.142
Descriptionto Saccharomyces cerevisiae ALG1 (YBR110W)
COG categoryO
CAZyGT33
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2477Gcaud2477Gracilaria caudata M_176_S67 malegeneNODE_1056_length_14488_cov_4.591929 11931..13376 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2477.t1.stop1Gcaud2477.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1056_length_14488_cov_4.591929 11931..11933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2477.t1.CDS1Gcaud2477.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1056_length_14488_cov_4.591929 11931..13376 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2477.t1.exon1Gcaud2477.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1056_length_14488_cov_4.591929 11931..13376 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2477.t1.start1Gcaud2477.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1056_length_14488_cov_4.591929 13374..13376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2477.t1Gcaud2477.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1056_length_14488_cov_4.591929 11931..13376 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2477.t1 ID=Gcaud2477.t1|Name=Gcaud2477.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=482bp
MNHLGVFVHFLNINIIFAAVAVKVISQHMEAPLWGGMLLSILSTLASLCA
VLLLLTLLALLFIRHYHQYRLKANPLPPAVLLVSQSPANHSPRVIAHLKA
CLHFSEQDAVIFLAEPPNTVTDERLTFHSLPQYPPLVRRNAFTLLKKAIS
LLFAQASCLSTVACLPFGIHHIILATPPALPLLPLLILLRPFYFPRSQII
VDIHNLAYTLSAQHNTNRYFLTFARQLELRSLRFAHHTWTVSSALAQFLR
TVGVTARVLRDLPSDVFTKLREQSLSEEEKIALIERVRDQATCFGPPSLG
SKLPLIVSSTSWTPDEDLSMLRKSVMQLDRNEVSLRVVITGKGPLRATFE
KQLRALRLQHVQVWLAWLPFSDYAAILSISTLGVSLHASSSALDLPMKAV
DMLGTGLPVLALRYPCINELIKDGRNGLLFNDSENLTECIRQVVLDEQLL
RRLREGAADSFQEEWLAQWEAVALPSISPST*
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spliced messenger RNA

>Gcaud2477.t1 ID=Gcaud2477.t1|Name=Gcaud2477.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:11931..13376- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCATCTTGGAGTTTTTGTTCACTTCCTCAACATCAACATCATCTT
TGCAGCGGTCGCGGTTAAGGTCATCTCGCAACACATGGAGGCGCCACTCT
GGGGCGGCATGCTGCTGTCCATTCTATCCACGTTAGCATCCTTGTGCGCC
GTATTGCTTCTTCTCACCCTATTAGCGCTTCTCTTTATCCGCCATTACCA
CCAGTATCGCCTCAAGGCAAACCCTCTACCGCCAGCCGTTCTGCTAGTTT
CCCAATCACCGGCGAATCATTCGCCGCGCGTCATCGCACATCTCAAAGCT
TGCTTACACTTCTCAGAACAAGATGCCGTAATCTTCCTCGCCGAACCTCC
CAACACAGTTACAGATGAGCGACTCACTTTTCATTCTTTACCGCAGTATC
CTCCGCTAGTTCGAAGAAATGCGTTCACCTTGTTGAAGAAAGCAATTTCG
CTGCTTTTCGCCCAAGCGTCTTGCTTAAGCACTGTGGCCTGTCTTCCGTT
TGGTATTCATCATATCATTCTTGCCACTCCTCCCGCGCTTCCTCTTCTAC
CGCTTCTGATTCTCTTGCGACCGTTCTATTTTCCGCGCTCGCAAATCATC
GTTGATATTCATAATCTTGCGTATACGCTTTCCGCACAGCACAATACTAA
TCGCTACTTTCTCACGTTTGCACGACAACTTGAGCTACGTTCTCTGCGAT
TCGCACACCACACATGGACCGTTTCTTCAGCGCTTGCACAGTTTCTAAGA
ACTGTTGGTGTAACAGCACGCGTTCTTCGAGATCTTCCCTCCGATGTGTT
CACTAAGCTTCGAGAACAATCTCTTTCAGAAGAGGAAAAGATAGCCTTGA
TAGAACGCGTTCGAGATCAAGCGACATGTTTCGGTCCGCCATCCCTCGGA
AGCAAGCTTCCTTTGATTGTTTCCAGCACCAGCTGGACGCCTGACGAAGA
TCTTTCCATGCTTCGAAAATCTGTTATGCAACTGGATCGCAATGAAGTAA
GCCTTCGCGTTGTGATTACTGGAAAGGGTCCTTTGCGGGCCACCTTTGAA
AAACAACTCCGGGCTCTCAGGCTTCAGCATGTGCAAGTATGGCTTGCATG
GTTACCATTTTCTGATTACGCTGCGATTCTTTCCATTTCAACACTTGGTG
TTTCTCTGCATGCAAGTTCGTCCGCATTAGATCTACCTATGAAAGCCGTA
GACATGCTGGGGACTGGTCTACCTGTCTTAGCGCTGAGATACCCATGTAT
AAATGAGCTGATCAAAGATGGGCGCAATGGGCTGTTGTTCAACGACTCCG
AGAACCTTACCGAGTGTATTCGGCAGGTTGTTCTCGATGAGCAGCTTTTG
CGTCGTTTGCGTGAAGGTGCCGCAGACTCTTTTCAAGAAGAATGGTTAGC
ACAATGGGAGGCGGTGGCATTGCCATCCATATCACCCAGCACATGA
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protein sequence of Gcaud2477.t1

>Gcaud2477.t1 ID=Gcaud2477.t1|Name=Gcaud2477.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=482bp
MNHLGVFVHFLNINIIFAAVAVKVISQHMEAPLWGGMLLSILSTLASLCA
VLLLLTLLALLFIRHYHQYRLKANPLPPAVLLVSQSPANHSPRVIAHLKA
CLHFSEQDAVIFLAEPPNTVTDERLTFHSLPQYPPLVRRNAFTLLKKAIS
LLFAQASCLSTVACLPFGIHHIILATPPALPLLPLLILLRPFYFPRSQII
VDIHNLAYTLSAQHNTNRYFLTFARQLELRSLRFAHHTWTVSSALAQFLR
TVGVTARVLRDLPSDVFTKLREQSLSEEEKIALIERVRDQATCFGPPSLG
SKLPLIVSSTSWTPDEDLSMLRKSVMQLDRNEVSLRVVITGKGPLRATFE
KQLRALRLQHVQVWLAWLPFSDYAAILSISTLGVSLHASSSALDLPMKAV
DMLGTGLPVLALRYPCINELIKDGRNGLLFNDSENLTECIRQVVLDEQLL
RRLREGAADSFQEEWLAQWEAVALPSISPST*
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mRNA from alignment at NODE_1056_length_14488_cov_4.591929:11931..13376-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2477.t1 ID=Gcaud2477.t1|Name=Gcaud2477.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:11931..13376- (Gracilaria caudata M_176_S67 male)
ATGAATCATCTTGGAGTTTTTGTTCACTTCCTCAACATCAACATCATCTT
TGCAGCGGTCGCGGTTAAGGTCATCTCGCAACACATGGAGGCGCCACTCT
GGGGCGGCATGCTGCTGTCCATTCTATCCACGTTAGCATCCTTGTGCGCC
GTATTGCTTCTTCTCACCCTATTAGCGCTTCTCTTTATCCGCCATTACCA
CCAGTATCGCCTCAAGGCAAACCCTCTACCGCCAGCCGTTCTGCTAGTTT
CCCAATCACCGGCGAATCATTCGCCGCGCGTCATCGCACATCTCAAAGCT
TGCTTACACTTCTCAGAACAAGATGCCGTAATCTTCCTCGCCGAACCTCC
CAACACAGTTACAGATGAGCGACTCACTTTTCATTCTTTACCGCAGTATC
CTCCGCTAGTTCGAAGAAATGCGTTCACCTTGTTGAAGAAAGCAATTTCG
CTGCTTTTCGCCCAAGCGTCTTGCTTAAGCACTGTGGCCTGTCTTCCGTT
TGGTATTCATCATATCATTCTTGCCACTCCTCCCGCGCTTCCTCTTCTAC
CGCTTCTGATTCTCTTGCGACCGTTCTATTTTCCGCGCTCGCAAATCATC
GTTGATATTCATAATCTTGCGTATACGCTTTCCGCACAGCACAATACTAA
TCGCTACTTTCTCACGTTTGCACGACAACTTGAGCTACGTTCTCTGCGAT
TCGCACACCACACATGGACCGTTTCTTCAGCGCTTGCACAGTTTCTAAGA
ACTGTTGGTGTAACAGCACGCGTTCTTCGAGATCTTCCCTCCGATGTGTT
CACTAAGCTTCGAGAACAATCTCTTTCAGAAGAGGAAAAGATAGCCTTGA
TAGAACGCGTTCGAGATCAAGCGACATGTTTCGGTCCGCCATCCCTCGGA
AGCAAGCTTCCTTTGATTGTTTCCAGCACCAGCTGGACGCCTGACGAAGA
TCTTTCCATGCTTCGAAAATCTGTTATGCAACTGGATCGCAATGAAGTAA
GCCTTCGCGTTGTGATTACTGGAAAGGGTCCTTTGCGGGCCACCTTTGAA
AAACAACTCCGGGCTCTCAGGCTTCAGCATGTGCAAGTATGGCTTGCATG
GTTACCATTTTCTGATTACGCTGCGATTCTTTCCATTTCAACACTTGGTG
TTTCTCTGCATGCAAGTTCGTCCGCATTAGATCTACCTATGAAAGCCGTA
GACATGCTGGGGACTGGTCTACCTGTCTTAGCGCTGAGATACCCATGTAT
AAATGAGCTGATCAAAGATGGGCGCAATGGGCTGTTGTTCAACGACTCCG
AGAACCTTACCGAGTGTATTCGGCAGGTTGTTCTCGATGAGCAGCTTTTG
CGTCGTTTGCGTGAAGGTGCCGCAGACTCTTTTCAAGAAGAATGGTTAGC
ACAATGGGAGGCGGTGGCATTGCCATCCATATCACCCAGCACATGA
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Coding sequence (CDS) from alignment at NODE_1056_length_14488_cov_4.591929:11931..13376-

>Gcaud2477.t1 ID=Gcaud2477.t1|Name=Gcaud2477.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1446bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:11931..13376- (Gracilaria caudata M_176_S67 male)
ATGAATCATCTTGGAGTTTTTGTTCACTTCCTCAACATCAACATCATCTT
TGCAGCGGTCGCGGTTAAGGTCATCTCGCAACACATGGAGGCGCCACTCT
GGGGCGGCATGCTGCTGTCCATTCTATCCACGTTAGCATCCTTGTGCGCC
GTATTGCTTCTTCTCACCCTATTAGCGCTTCTCTTTATCCGCCATTACCA
CCAGTATCGCCTCAAGGCAAACCCTCTACCGCCAGCCGTTCTGCTAGTTT
CCCAATCACCGGCGAATCATTCGCCGCGCGTCATCGCACATCTCAAAGCT
TGCTTACACTTCTCAGAACAAGATGCCGTAATCTTCCTCGCCGAACCTCC
CAACACAGTTACAGATGAGCGACTCACTTTTCATTCTTTACCGCAGTATC
CTCCGCTAGTTCGAAGAAATGCGTTCACCTTGTTGAAGAAAGCAATTTCG
CTGCTTTTCGCCCAAGCGTCTTGCTTAAGCACTGTGGCCTGTCTTCCGTT
TGGTATTCATCATATCATTCTTGCCACTCCTCCCGCGCTTCCTCTTCTAC
CGCTTCTGATTCTCTTGCGACCGTTCTATTTTCCGCGCTCGCAAATCATC
GTTGATATTCATAATCTTGCGTATACGCTTTCCGCACAGCACAATACTAA
TCGCTACTTTCTCACGTTTGCACGACAACTTGAGCTACGTTCTCTGCGAT
TCGCACACCACACATGGACCGTTTCTTCAGCGCTTGCACAGTTTCTAAGA
ACTGTTGGTGTAACAGCACGCGTTCTTCGAGATCTTCCCTCCGATGTGTT
CACTAAGCTTCGAGAACAATCTCTTTCAGAAGAGGAAAAGATAGCCTTGA
TAGAACGCGTTCGAGATCAAGCGACATGTTTCGGTCCGCCATCCCTCGGA
AGCAAGCTTCCTTTGATTGTTTCCAGCACCAGCTGGACGCCTGACGAAGA
TCTTTCCATGCTTCGAAAATCTGTTATGCAACTGGATCGCAATGAAGTAA
GCCTTCGCGTTGTGATTACTGGAAAGGGTCCTTTGCGGGCCACCTTTGAA
AAACAACTCCGGGCTCTCAGGCTTCAGCATGTGCAAGTATGGCTTGCATG
GTTACCATTTTCTGATTACGCTGCGATTCTTTCCATTTCAACACTTGGTG
TTTCTCTGCATGCAAGTTCGTCCGCATTAGATCTACCTATGAAAGCCGTA
GACATGCTGGGGACTGGTCTACCTGTCTTAGCGCTGAGATACCCATGTAT
AAATGAGCTGATCAAAGATGGGCGCAATGGGCTGTTGTTCAACGACTCCG
AGAACCTTACCGAGTGTATTCGGCAGGTTGTTCTCGATGAGCAGCTTTTG
CGTCGTTTGCGTGAAGGTGCCGCAGACTCTTTTCAAGAAGAATGGTTAGC
ACAATGGGAGGCGGTGGCATTGCCATCCATATCACCCAGCACATGA
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