Gcaud247.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud247.t1
Unique Name	Gcaud247.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1048_length_14702_cov_4.665047	contig	NODE_1048_length_14702_cov_4.665047:7387..8361 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	52598.EE36_10095
Preferred name	dhaA
PFAMs	Abhydrolase_1,Abhydrolase_6
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC01317,RC01340,RC01341,RC02013
KEGG ko	ko:K01563
KEGG Reaction	R05284,R05367,R05368,R05369,R05370,R07669,R07670
KEGG Pathway	ko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120
Evalue	1.77e-131
EggNOG OGs	COG0596@1\|root,COG0596@2\|Bacteria,1R4ZX@1224\|Proteobacteria,2TU6R@28211\|Alphaproteobacteria
EC	3.8.1.5
Description	Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud247	Gcaud247	Gracilaria caudata M_176_S67 male	gene	NODE_1048_length_14702_cov_4.665047 7387..8361 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud247.t1.start1	Gcaud247.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1048_length_14702_cov_4.665047 7387..7389 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud247.t1.CDS1	Gcaud247.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1048_length_14702_cov_4.665047 7387..8361 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud247.t1.exon1	Gcaud247.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1048_length_14702_cov_4.665047 7387..8361 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud247.t1.stop1	Gcaud247.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1048_length_14702_cov_4.665047 8359..8361 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud247.t1	Gcaud247.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1048_length_14702_cov_4.665047 7387..8361 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1048_length_14702_cov_4.665047:7387..8361+
coding sequence from alignment at NODE_1048_length_14702_cov_4.665047:7387..8361+

mRNA sequence

>Gcaud247.t1 ID=Gcaud247.t1|Name=Gcaud247.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=325bp
MSSRALSVVSPIVLFVLLAGLGHGASATDDPPARFVTKKFETISGKRMAY
VEVGTGDPIVFLHGNPTSSYLWRNIMPHLEGRGRLIAPDLIGMGDSDKLD
FSGPNRYTYVEHSNFLYQLLEAIGVKKNVTLVIHDWGSALGFLWAFYNRN
NPDAVKGIVFFEALVTPLRSDSFPSEGLDFFALLRSPAGEELVLQQNFFV
EEILPGGLIRELSVEELNEYRRPFLNPGEDRRPTLTFPRQVSIDGVPADV
TFLIESYSQWLRTSRIPKLFIKGEPGILITNGSEALELVRSWPELTEVSV
TGLHYLQEDSPDEIGSAIANWLPV*

spliced messenger RNA

>Gcaud247.t1 ID=Gcaud247.t1|Name=Gcaud247.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_1048_length_14702_cov_4.665047:7387..8361+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCCGAGCCCTTTCAGTCGTTTCTCCCATCGTGCTCTTCGTTTT
GCTAGCCGGTTTGGGACATGGAGCTTCTGCCACAGATGATCCACCGGCCC
GTTTTGTGACAAAGAAGTTCGAGACCATATCCGGAAAGAGAATGGCGTAC
GTTGAGGTTGGAACCGGCGATCCGATCGTGTTCCTGCACGGAAATCCCAC
CTCCTCCTACCTGTGGCGAAATATTATGCCGCATCTCGAAGGTCGTGGTC
GACTCATAGCCCCGGATCTTATCGGCATGGGAGATTCCGACAAGCTTGAT
TTTAGCGGACCGAATCGATACACCTATGTTGAACACTCCAACTTTCTTTA
TCAACTGTTGGAGGCGATTGGAGTCAAGAAGAATGTCACTTTGGTCATCC
ATGATTGGGGGTCTGCACTCGGGTTCCTGTGGGCGTTCTACAATCGTAAC
AATCCAGACGCGGTGAAGGGCATTGTGTTCTTCGAGGCCTTAGTCACACC
GCTTCGATCAGACTCCTTTCCTTCTGAGGGCTTGGATTTCTTCGCTCTGC
TTCGATCCCCTGCAGGAGAAGAACTCGTTTTACAGCAAAACTTTTTCGTT
GAAGAAATTCTACCGGGTGGTCTCATACGCGAGCTATCAGTCGAAGAGTT
GAACGAATACCGTCGTCCGTTTCTGAATCCCGGTGAAGATCGTCGACCGA
CCCTCACATTTCCGAGACAAGTTTCTATCGATGGGGTTCCAGCTGATGTG
ACTTTCCTAATTGAGTCGTACTCTCAATGGCTGCGAACTTCAAGAATCCC
GAAACTTTTCATCAAGGGAGAACCAGGAATTCTGATCACCAATGGCTCAG
AGGCGCTTGAACTCGTTCGTTCATGGCCAGAACTGACCGAAGTTTCCGTT
ACAGGTCTCCACTATCTGCAAGAAGACTCTCCGGATGAGATTGGGAGCGC
TATTGCGAACTGGCTGCCTGTTTGA

protein sequence of Gcaud247.t1

>Gcaud247.t1 ID=Gcaud247.t1|Name=Gcaud247.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=325bp
MSSRALSVVSPIVLFVLLAGLGHGASATDDPPARFVTKKFETISGKRMAY
VEVGTGDPIVFLHGNPTSSYLWRNIMPHLEGRGRLIAPDLIGMGDSDKLD
FSGPNRYTYVEHSNFLYQLLEAIGVKKNVTLVIHDWGSALGFLWAFYNRN
NPDAVKGIVFFEALVTPLRSDSFPSEGLDFFALLRSPAGEELVLQQNFFV
EEILPGGLIRELSVEELNEYRRPFLNPGEDRRPTLTFPRQVSIDGVPADV
TFLIESYSQWLRTSRIPKLFIKGEPGILITNGSEALELVRSWPELTEVSV
TGLHYLQEDSPDEIGSAIANWLPV*

mRNA from alignment at NODE_1048_length_14702_cov_4.665047:7387..8361+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud247.t1 ID=Gcaud247.t1|Name=Gcaud247.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=975bp|location=Sequence derived from alignment at NODE_1048_length_14702_cov_4.665047:7387..8361+ (Gracilaria caudata M_176_S67 male)
ATGTCATCCCGAGCCCTTTCAGTCGTTTCTCCCATCGTGCTCTTCGTTTT
GCTAGCCGGTTTGGGACATGGAGCTTCTGCCACAGATGATCCACCGGCCC
GTTTTGTGACAAAGAAGTTCGAGACCATATCCGGAAAGAGAATGGCGTAC
GTTGAGGTTGGAACCGGCGATCCGATCGTGTTCCTGCACGGAAATCCCAC
CTCCTCCTACCTGTGGCGAAATATTATGCCGCATCTCGAAGGTCGTGGTC
GACTCATAGCCCCGGATCTTATCGGCATGGGAGATTCCGACAAGCTTGAT
TTTAGCGGACCGAATCGATACACCTATGTTGAACACTCCAACTTTCTTTA
TCAACTGTTGGAGGCGATTGGAGTCAAGAAGAATGTCACTTTGGTCATCC
ATGATTGGGGGTCTGCACTCGGGTTCCTGTGGGCGTTCTACAATCGTAAC
AATCCAGACGCGGTGAAGGGCATTGTGTTCTTCGAGGCCTTAGTCACACC
GCTTCGATCAGACTCCTTTCCTTCTGAGGGCTTGGATTTCTTCGCTCTGC
TTCGATCCCCTGCAGGAGAAGAACTCGTTTTACAGCAAAACTTTTTCGTT
GAAGAAATTCTACCGGGTGGTCTCATACGCGAGCTATCAGTCGAAGAGTT
GAACGAATACCGTCGTCCGTTTCTGAATCCCGGTGAAGATCGTCGACCGA
CCCTCACATTTCCGAGACAAGTTTCTATCGATGGGGTTCCAGCTGATGTG
ACTTTCCTAATTGAGTCGTACTCTCAATGGCTGCGAACTTCAAGAATCCC
GAAACTTTTCATCAAGGGAGAACCAGGAATTCTGATCACCAATGGCTCAG
AGGCGCTTGAACTCGTTCGTTCATGGCCAGAACTGACCGAAGTTTCCGTT
ACAGGTCTCCACTATCTGCAAGAAGACTCTCCGGATGAGATTGGGAGCGC
TATTGCGAACTGGCTGCCTGTTTGA

Coding sequence (CDS) from alignment at NODE_1048_length_14702_cov_4.665047:7387..8361+

>Gcaud247.t1 ID=Gcaud247.t1|Name=Gcaud247.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=975bp|location=Sequence derived from alignment at NODE_1048_length_14702_cov_4.665047:7387..8361+ (Gracilaria caudata M_176_S67 male)
ATGTCATCCCGAGCCCTTTCAGTCGTTTCTCCCATCGTGCTCTTCGTTTT
GCTAGCCGGTTTGGGACATGGAGCTTCTGCCACAGATGATCCACCGGCCC
GTTTTGTGACAAAGAAGTTCGAGACCATATCCGGAAAGAGAATGGCGTAC
GTTGAGGTTGGAACCGGCGATCCGATCGTGTTCCTGCACGGAAATCCCAC
CTCCTCCTACCTGTGGCGAAATATTATGCCGCATCTCGAAGGTCGTGGTC
GACTCATAGCCCCGGATCTTATCGGCATGGGAGATTCCGACAAGCTTGAT
TTTAGCGGACCGAATCGATACACCTATGTTGAACACTCCAACTTTCTTTA
TCAACTGTTGGAGGCGATTGGAGTCAAGAAGAATGTCACTTTGGTCATCC
ATGATTGGGGGTCTGCACTCGGGTTCCTGTGGGCGTTCTACAATCGTAAC
AATCCAGACGCGGTGAAGGGCATTGTGTTCTTCGAGGCCTTAGTCACACC
GCTTCGATCAGACTCCTTTCCTTCTGAGGGCTTGGATTTCTTCGCTCTGC
TTCGATCCCCTGCAGGAGAAGAACTCGTTTTACAGCAAAACTTTTTCGTT
GAAGAAATTCTACCGGGTGGTCTCATACGCGAGCTATCAGTCGAAGAGTT
GAACGAATACCGTCGTCCGTTTCTGAATCCCGGTGAAGATCGTCGACCGA
CCCTCACATTTCCGAGACAAGTTTCTATCGATGGGGTTCCAGCTGATGTG
ACTTTCCTAATTGAGTCGTACTCTCAATGGCTGCGAACTTCAAGAATCCC
GAAACTTTTCATCAAGGGAGAACCAGGAATTCTGATCACCAATGGCTCAG
AGGCGCTTGAACTCGTTCGTTCATGGCCAGAACTGACCGAAGTTTCCGTT
ACAGGTCTCCACTATCTGCAAGAAGACTCTCCGGATGAGATTGGGAGCGC
TATTGCGAACTGGCTGCCTGTTTGA