Gcaud2466.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2466.t1
Unique Name	Gcaud2466.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	330

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1614_length_9483_cov_3.228492	contig	NODE_1614_length_9483_cov_3.228492:8239..9228 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1333507.AUTQ01000189_gene2507
Max annot lvl	1236\|Gammaproteobacteria
Evalue	5.88e-117
EggNOG OGs	28ID6@1\|root,2Z8FE@2\|Bacteria,1MX0W@1224\|Proteobacteria,1S2X2@1236\|Gammaproteobacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2466	Gcaud2466	Gracilaria caudata M_176_S67 male	gene	NODE_1614_length_9483_cov_3.228492 8239..9228 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2466.t1.stop1	Gcaud2466.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1614_length_9483_cov_3.228492 8239..8241 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2466.t1.CDS1	Gcaud2466.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1614_length_9483_cov_3.228492 8239..9228 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2466.t1.exon1	Gcaud2466.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1614_length_9483_cov_3.228492 8239..9228 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2466.t1.start1	Gcaud2466.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1614_length_9483_cov_3.228492 9226..9228 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2466.t1	Gcaud2466.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1614_length_9483_cov_3.228492 8239..9228 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1614_length_9483_cov_3.228492:8239..9228-
coding sequence from alignment at NODE_1614_length_9483_cov_3.228492:8239..9228-

mRNA sequence

>Gcaud2466.t1 ID=Gcaud2466.t1|Name=Gcaud2466.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=330bp
MLWFEELVGFAELSPLQVRQNLRVVANRLFSKKNSRSFQCGTLSTPSLAQ
LRLRTASLSHAAALNSVQELVADVRDLHLDPRFNDALFQVASQFNLLEMA
RPTVTPEAGVGIYQLDRTQGPSCAVACGAGTIFRNYFVPLDGRLGQDVHH
QIDCLSDLGDELGNRKESLWQMRNGYVFATVSGLRCIRDRLARSSEQERD
ELRGLLRIGVQQDTQVTLEQSTNLVTQVFCSALPVAYSEHPSSLWEPFAR
LVLEAAYESTLRVALLNRERTGCGLVFLTLLGGGVFGNRMEWIVDAMERA
IAIAQNSGLQIRIVSYDRPCVEIRRLLTV*

spliced messenger RNA

>Gcaud2466.t1 ID=Gcaud2466.t1|Name=Gcaud2466.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=990bp|location=Sequence derived from alignment at NODE_1614_length_9483_cov_3.228492:8239..9228- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTGGTTCGAAGAGCTCGTCGGCTTCGCCGAGCTCTCCCCATTACA
AGTGAGACAAAACCTGCGCGTTGTCGCCAACAGGTTGTTCTCAAAGAAGA
ACAGCCGCTCCTTCCAATGCGGCACGCTCTCCACGCCCTCTTTAGCGCAG
CTTCGCTTGCGCACCGCCTCTCTATCTCACGCCGCGGCGCTTAACTCCGT
GCAGGAGCTGGTGGCAGATGTTAGGGATCTGCATTTGGACCCGCGATTCA
ACGATGCCCTGTTCCAAGTTGCGTCGCAGTTCAACCTGCTAGAGATGGCC
CGCCCCACCGTCACGCCCGAGGCCGGCGTCGGGATCTACCAGCTTGATCG
CACACAGGGGCCGTCTTGTGCCGTGGCGTGTGGGGCGGGCACCATCTTCC
GCAACTACTTCGTGCCGCTTGATGGACGGCTCGGACAGGATGTGCACCAT
CAAATAGACTGTCTCAGTGACCTAGGAGACGAGCTTGGCAACCGCAAAGA
ATCGCTGTGGCAAATGCGCAACGGGTACGTGTTCGCGACGGTCTCGGGAC
TTCGCTGTATTCGCGATCGCTTGGCACGCAGCAGCGAGCAGGAGCGCGAC
GAACTGCGCGGGCTGCTGCGAATCGGCGTGCAACAGGATACGCAAGTTAC
GCTGGAGCAGAGTACAAACCTTGTCACGCAGGTTTTCTGTTCGGCGCTGC
CGGTGGCCTATTCCGAGCATCCCAGTTCGCTGTGGGAGCCATTTGCAAGG
CTGGTGCTTGAGGCGGCGTATGAGAGCACCTTACGAGTGGCGCTGCTGAA
TAGGGAGCGCACGGGATGTGGGTTGGTGTTTCTCACGCTGTTGGGGGGCG
GCGTGTTCGGAAATCGCATGGAGTGGATCGTTGATGCTATGGAGCGTGCG
ATTGCGATTGCGCAAAATTCTGGACTGCAAATCAGGATCGTGAGCTATGA
CCGCCCCTGCGTAGAGATTAGACGCCTGTTGACAGTCTGA

protein sequence of Gcaud2466.t1

>Gcaud2466.t1 ID=Gcaud2466.t1|Name=Gcaud2466.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=330bp
MLWFEELVGFAELSPLQVRQNLRVVANRLFSKKNSRSFQCGTLSTPSLAQ
LRLRTASLSHAAALNSVQELVADVRDLHLDPRFNDALFQVASQFNLLEMA
RPTVTPEAGVGIYQLDRTQGPSCAVACGAGTIFRNYFVPLDGRLGQDVHH
QIDCLSDLGDELGNRKESLWQMRNGYVFATVSGLRCIRDRLARSSEQERD
ELRGLLRIGVQQDTQVTLEQSTNLVTQVFCSALPVAYSEHPSSLWEPFAR
LVLEAAYESTLRVALLNRERTGCGLVFLTLLGGGVFGNRMEWIVDAMERA
IAIAQNSGLQIRIVSYDRPCVEIRRLLTV*

mRNA from alignment at NODE_1614_length_9483_cov_3.228492:8239..9228-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2466.t1 ID=Gcaud2466.t1|Name=Gcaud2466.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=990bp|location=Sequence derived from alignment at NODE_1614_length_9483_cov_3.228492:8239..9228- (Gracilaria caudata M_176_S67 male)
ATGCTGTGGTTCGAAGAGCTCGTCGGCTTCGCCGAGCTCTCCCCATTACA
AGTGAGACAAAACCTGCGCGTTGTCGCCAACAGGTTGTTCTCAAAGAAGA
ACAGCCGCTCCTTCCAATGCGGCACGCTCTCCACGCCCTCTTTAGCGCAG
CTTCGCTTGCGCACCGCCTCTCTATCTCACGCCGCGGCGCTTAACTCCGT
GCAGGAGCTGGTGGCAGATGTTAGGGATCTGCATTTGGACCCGCGATTCA
ACGATGCCCTGTTCCAAGTTGCGTCGCAGTTCAACCTGCTAGAGATGGCC
CGCCCCACCGTCACGCCCGAGGCCGGCGTCGGGATCTACCAGCTTGATCG
CACACAGGGGCCGTCTTGTGCCGTGGCGTGTGGGGCGGGCACCATCTTCC
GCAACTACTTCGTGCCGCTTGATGGACGGCTCGGACAGGATGTGCACCAT
CAAATAGACTGTCTCAGTGACCTAGGAGACGAGCTTGGCAACCGCAAAGA
ATCGCTGTGGCAAATGCGCAACGGGTACGTGTTCGCGACGGTCTCGGGAC
TTCGCTGTATTCGCGATCGCTTGGCACGCAGCAGCGAGCAGGAGCGCGAC
GAACTGCGCGGGCTGCTGCGAATCGGCGTGCAACAGGATACGCAAGTTAC
GCTGGAGCAGAGTACAAACCTTGTCACGCAGGTTTTCTGTTCGGCGCTGC
CGGTGGCCTATTCCGAGCATCCCAGTTCGCTGTGGGAGCCATTTGCAAGG
CTGGTGCTTGAGGCGGCGTATGAGAGCACCTTACGAGTGGCGCTGCTGAA
TAGGGAGCGCACGGGATGTGGGTTGGTGTTTCTCACGCTGTTGGGGGGCG
GCGTGTTCGGAAATCGCATGGAGTGGATCGTTGATGCTATGGAGCGTGCG
ATTGCGATTGCGCAAAATTCTGGACTGCAAATCAGGATCGTGAGCTATGA
CCGCCCCTGCGTAGAGATTAGACGCCTGTTGACAGTCTGA

Coding sequence (CDS) from alignment at NODE_1614_length_9483_cov_3.228492:8239..9228-

>Gcaud2466.t1 ID=Gcaud2466.t1|Name=Gcaud2466.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=990bp|location=Sequence derived from alignment at NODE_1614_length_9483_cov_3.228492:8239..9228- (Gracilaria caudata M_176_S67 male)
ATGCTGTGGTTCGAAGAGCTCGTCGGCTTCGCCGAGCTCTCCCCATTACA
AGTGAGACAAAACCTGCGCGTTGTCGCCAACAGGTTGTTCTCAAAGAAGA
ACAGCCGCTCCTTCCAATGCGGCACGCTCTCCACGCCCTCTTTAGCGCAG
CTTCGCTTGCGCACCGCCTCTCTATCTCACGCCGCGGCGCTTAACTCCGT
GCAGGAGCTGGTGGCAGATGTTAGGGATCTGCATTTGGACCCGCGATTCA
ACGATGCCCTGTTCCAAGTTGCGTCGCAGTTCAACCTGCTAGAGATGGCC
CGCCCCACCGTCACGCCCGAGGCCGGCGTCGGGATCTACCAGCTTGATCG
CACACAGGGGCCGTCTTGTGCCGTGGCGTGTGGGGCGGGCACCATCTTCC
GCAACTACTTCGTGCCGCTTGATGGACGGCTCGGACAGGATGTGCACCAT
CAAATAGACTGTCTCAGTGACCTAGGAGACGAGCTTGGCAACCGCAAAGA
ATCGCTGTGGCAAATGCGCAACGGGTACGTGTTCGCGACGGTCTCGGGAC
TTCGCTGTATTCGCGATCGCTTGGCACGCAGCAGCGAGCAGGAGCGCGAC
GAACTGCGCGGGCTGCTGCGAATCGGCGTGCAACAGGATACGCAAGTTAC
GCTGGAGCAGAGTACAAACCTTGTCACGCAGGTTTTCTGTTCGGCGCTGC
CGGTGGCCTATTCCGAGCATCCCAGTTCGCTGTGGGAGCCATTTGCAAGG
CTGGTGCTTGAGGCGGCGTATGAGAGCACCTTACGAGTGGCGCTGCTGAA
TAGGGAGCGCACGGGATGTGGGTTGGTGTTTCTCACGCTGTTGGGGGGCG
GCGTGTTCGGAAATCGCATGGAGTGGATCGTTGATGCTATGGAGCGTGCG
ATTGCGATTGCGCAAAATTCTGGACTGCAAATCAGGATCGTGAGCTATGA
CCGCCCCTGCGTAGAGATTAGACGCCTGTTGACAGTCTGA