Gcaud2465.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2465.t1
Unique NameGcaud2465.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1614_length_9483_cov_3.228492contigNODE_1614_length_9483_cov_3.228492:2604..5707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN03251
PFAMsBCNT
Max annot lvl35493|Streptophyta
Evalue4.37e-10
EggNOG OGsKOG4776@1|root,KOG4776@2759|Eukaryota,37Q12@33090|Viridiplantae,3GG01@35493|Streptophyta
DescriptionCraniofacial development protein
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2465Gcaud2465Gracilaria caudata M_176_S67 malegeneNODE_1614_length_9483_cov_3.228492 2604..5707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2465.t1Gcaud2465.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1614_length_9483_cov_3.228492 2604..5707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2465.t1.stop1Gcaud2465.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1614_length_9483_cov_3.228492 2604..2606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2465.t1.CDS1Gcaud2465.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1614_length_9483_cov_3.228492 2604..3068 -
Gcaud2465.t1.CDS2Gcaud2465.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1614_length_9483_cov_3.228492 3173..3225 -
Gcaud2465.t1.CDS3Gcaud2465.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1614_length_9483_cov_3.228492 5203..5707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2465.t1.exon1Gcaud2465.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1614_length_9483_cov_3.228492 2604..3068 -
Gcaud2465.t1.exon2Gcaud2465.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1614_length_9483_cov_3.228492 3173..3225 -
Gcaud2465.t1.exon3Gcaud2465.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1614_length_9483_cov_3.228492 5203..5707 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2465.t1.intron1Gcaud2465.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1614_length_9483_cov_3.228492 3069..3172 -
Gcaud2465.t1.intron2Gcaud2465.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1614_length_9483_cov_3.228492 3226..5202 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2465.t1.start1Gcaud2465.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1614_length_9483_cov_3.228492 5705..5707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2465.t1 ID=Gcaud2465.t1|Name=Gcaud2465.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=341bp
MGSWDVDDAVGGMISADASTVWSEEGLDDGVELSEAEHMMAKLNESCLQM
GMDYLEEISRGCGAAAEMAWARAFPHVDLRQLFPSGGISSERNPFNEVDC
SVLDDYTKNADPELTKEQHWMARENEARLQIEVEYLEELSRKHAQTSRAQ
WKMAYPHCARYYASGSVGRVEQPAPKRARVSPPNNKSIDDIWAEMNNNNR
PLSQPQQQPVEQSTAARDDGGDGDGVRNPAEKATTPFKVRMLHDLEKEQN
ELNRPHTSADTKAPATGLEAVLGLVRGKKAYTVLDGTRKQWSEFKKDEQV
NEELETYKKGRQRYTDRMAFLARSDVREWEFEQRGKRKRR*
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spliced messenger RNA

>Gcaud2465.t1 ID=Gcaud2465.t1|Name=Gcaud2465.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_1614_length_9483_cov_3.228492:2604..5707- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAGCTGGGATGTGGATGATGCTGTGGGAGGGATGATATCGGCCGA
TGCAAGTACTGTGTGGAGTGAGGAGGGATTGGACGATGGTGTTGAGCTCT
CTGAGGCGGAGCACATGATGGCAAAGCTAAACGAAAGCTGTTTGCAAATG
GGGATGGACTATCTAGAGGAGATCTCACGTGGATGTGGGGCAGCAGCGGA
AATGGCATGGGCTCGGGCGTTCCCGCATGTGGACCTTCGCCAACTGTTCC
CAAGCGGTGGGATTTCGAGCGAACGAAACCCGTTCAATGAGGTGGACTGC
AGTGTATTAGACGACTACACGAAGAACGCTGACCCAGAGCTCACGAAGGA
GCAACACTGGATGGCCAGAGAGAACGAAGCACGATTGCAAATAGAAGTAG
AATACCTGGAAGAGCTTTCCAGAAAGCATGCTCAGACTTCCAGAGCGCAA
TGGAAAATGGCGTACCCGCACTGCGCACGCTACTACGCGAGTGGCAGCGT
GGGACGTGTTGAGCAACCGGCCCCGAAGAGGGCGCGAGTGTCGCCGCCCA
ACAACAAAAGTATAGACGATATCTGGGCAGAGATGAACAACAACAACAGG
CCGTTGTCACAACCGCAACAACAGCCGGTCGAGCAAAGCACAGCGGCGCG
TGACGACGGCGGTGACGGCGACGGCGTCAGAAACCCTGCGGAAAAGGCGA
CGACGCCGTTCAAGGTGCGCATGTTACACGACCTAGAAAAGGAGCAGAAC
GAGCTCAATCGTCCGCACACATCGGCGGACACAAAAGCGCCGGCGACAGG
ACTGGAGGCGGTGCTGGGGCTGGTGCGCGGCAAGAAGGCGTACACGGTGC
TGGACGGCACACGAAAGCAGTGGAGCGAGTTCAAGAAGGATGAGCAGGTG
AACGAGGAGCTGGAGACGTACAAGAAGGGGAGGCAACGGTATACGGATCG
AATGGCGTTTCTTGCGCGCAGCGATGTTCGCGAGTGGGAGTTTGAGCAAC
GCGGCAAGCGAAAGCGACGTTGA
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protein sequence of Gcaud2465.t1

>Gcaud2465.t1 ID=Gcaud2465.t1|Name=Gcaud2465.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=341bp
MGSWDVDDAVGGMISADASTVWSEEGLDDGVELSEAEHMMAKLNESCLQM
GMDYLEEISRGCGAAAEMAWARAFPHVDLRQLFPSGGISSERNPFNEVDC
SVLDDYTKNADPELTKEQHWMARENEARLQIEVEYLEELSRKHAQTSRAQ
WKMAYPHCARYYASGSVGRVEQPAPKRARVSPPNNKSIDDIWAEMNNNNR
PLSQPQQQPVEQSTAARDDGGDGDGVRNPAEKATTPFKVRMLHDLEKEQN
ELNRPHTSADTKAPATGLEAVLGLVRGKKAYTVLDGTRKQWSEFKKDEQV
NEELETYKKGRQRYTDRMAFLARSDVREWEFEQRGKRKRR*
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mRNA from alignment at NODE_1614_length_9483_cov_3.228492:2604..5707-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2465.t1 ID=Gcaud2465.t1|Name=Gcaud2465.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3104bp|location=Sequence derived from alignment at NODE_1614_length_9483_cov_3.228492:2604..5707- (Gracilaria caudata M_176_S67 male)
ATGGGTAGCTGGGATGTGGATGATGCTGTGGGAGGGATGATATCGGCCGA
TGCAAGTACTGTGTGGAGTGAGGAGGGATTGGACGATGGTGTTGAGCTCT
CTGAGGCGGAGCACATGATGGCAAAGCTAAACGAAAGCTGTTTGCAAATG
GGGATGGACTATCTAGAGGAGATCTCACGTGGATGTGGGGCAGCAGCGGA
AATGGCATGGGCTCGGGCGTTCCCGCATGTGGACCTTCGCCAACTGTTCC
CAAGCGGTGGGATTTCGAGCGAACGAAACCCGTTCAATGAGGTGGACTGC
AGTGTATTAGACGACTACACGAAGAACGCTGACCCAGAGCTCACGAAGGA
GCAACACTGGATGGCCAGAGAGAACGAAGCACGATTGCAAATAGAAGTAG
AATACCTGGAAGAGCTTTCCAGAAAGCATGCTCAGACTTCCAGAGCGCAA
TGGAAAATGGCGTACCCGCACTGCGCACGCTACTACGCGAGTGGCAGCGT
GGGACGTCCCAAGTCAGTGGTGCTTGACAACAAGCTACCTTCAGACGCAT
GCCTCAGCGTGGACGGCGCCAAGTACCGCTATGTTCGATGCTGAACAATG
GTTGATGTTAGTGTGCAGTAGTGAAACGCAAACAATTGTAAACTTGTTGA
AACTATGGAACCGCCTTCTACCTTCTGCCTTCTTTCTTCTTCCTTGCCCG
CGTTTTAGATACAGCCCAGAAGTGAGCGCCCGGTCGGGGCTCTTCTTGGA
GCGCAGCTGTGCGCAGAGGAGCCAGCATCGCGGTTGTGTGCGACGAGAAG
ACTGCGGTCTAAGATGCGCATCGATTTTTGAACAACGCGCCCTCCTGCCG
TGCAGATAACGGTTCGAATGCGCGTCCACGATACGAAATCGGTGCTAGAG
CATCCGTTTTACAAAGGCTGTGTGTACGCTATTGCCAACTGTTGAATCAC
GCCATGAATATGTCTCATGACCCTCTCGCCAGGGGCGAAAGCGCAGCGTG
CTGCATTGAGCGCAGTAGATACGCTCGCCACTCGTTGCATCGCGAGCATT
TCGCGGTGAGCGAAGCAAAGAACGACCTCGAGTCAAGGTCTTTGACGCGC
ATTGCGAAAACGCCATAGGCGACGGTGCCGTGCACGTCAGCGGCACGAGC
TCGAGATCTCTTTCGACTGACGGCAAGCTGCGCCTTGCTGGATATGTTGC
TCAGGCCAATCATCTCTCGTAACACTACATTGCAGATGCGCGACACCGCG
CGCATGGCAGGCCCATCATGCGCCGTGGGTATGTAACTGGGGACGATCCA
TGTTTTGCAAACACGACGAAGCGCTTGCGAGTTTCGATATCGCGAAGGTC
GTCGTGCAGTGGCTCGAATTACGCGAACAAGAGCGCTTGTGAGGATTTTT
CGTGTAGAGTGCGCTACAAGGTGGGCGATTCTGAATTGCCATCAATCGAG
AAGACGCAAACGCGTGCTCTGAGCTTTTTGTGGCAGTTTAGTCCACACGG
CCTGCTCAATTTTGTTTCCCCGCACAAAGGAATTCGCCGTTCGCTCTCAA
GATTAGTCTTCGAAGCCAGATCCTTTTGTTTTTGAATACCAATGATACTA
CCTTCGGCTACCTTCGTAGGTCTAGATGAGAAAGAGCAACTACAACTTCC
ATCATAGGCTGCACTCGCTGCGCGAGCGATGTGGCTGCAGTTGCCACGCG
AGACGCGTGGACACCGTTGTCGACGTCAAATCAACCTGCTTCCGCCGCTC
TGCCTCGTCTATCTAGCTGTGTGGAGCGGCGACGCGCGTCGCCCCCGCCA
TCTGCAGCAGCGCGGGAAACACCGAGGAACGAGAGAACGGAAATGGAGGT
GCTAGGGAGCGAGCTGGTGTCGTCCGACTCGGATGACGCTGACTACGTAC
CACCGCCATCACCGCCGTCGCGCCAGCGCAACGAGCCGCGTCTGCGGGCG
CGCGCGCCGGCGCTTGCGCCGCCCTCGGACGAAGATGAAGACGATGACGA
TGAGGACGACGAAGAGGACGAGCTGTTTAGCGAAGATGCGCTTTTGAACG
AGCGTCGCGCGCTGGCGGCGCCTTCCTCTGCCGCGGGCTCAAGTGCCGCG
CACGCGGCGGCGGCTGCTGCGGCTGCTGGTGCTGGTGCTGCGTCTTCGTC
TGCTGGCGCTGGTGCTGCCGCTTCATCTGCTGGCGCTGGTGCTGCACCTT
CGTCTGCTGGCGCTGCTGCTGCATCTTTGACAGCTGGCGCTGCTGTTTCA
TCTTCGTCTGCTGGAGCAGCGTTGGCGTCAACGTCGGCGTCGGCGTCGGC
GTCGGCCGTGGATTCAGGCTGCGAGCCGCGCGCCGTCACTGCTGCCGCGG
CTGATTCTTCACCGGCAGGGCCGTCGTTGCAATGTGCACGCACGGCCGGA
CTCGCGCCTTCGCGCGCGCAAGCGAGCGTCGTGGAGAAGCGCGCTTCTGT
GGGTGCGTCCGCGGTGCGCAACGCTGTGGCAGGTGTTGAGCAACCGGCCC
CGAAGAGGGCGCGAGTGTCGCCGCCCAACAACAAAGTGAGTTAGCAAATC
AATGTGTTCTGTGTTGTCTTTTAAAAGCTTTTTGTTGCTCGTTTTGTGGT
TTGTGATGCTGACCGCATGATGTTTATGGCGTGTTACAGAGTATAGACGA
TATCTGGGCAGAGATGAACAACAACAACAGGCCGTTGTCACAACCGCAAC
AACAGCCGGTCGAGCAAAGCACAGCGGCGCGTGACGACGGCGGTGACGGC
GACGGCGTCAGAAACCCTGCGGAAAAGGCGACGACGCCGTTCAAGGTGCG
CATGTTACACGACCTAGAAAAGGAGCAGAACGAGCTCAATCGTCCGCACA
CATCGGCGGACACAAAAGCGCCGGCGACAGGACTGGAGGCGGTGCTGGGG
CTGGTGCGCGGCAAGAAGGCGTACACGGTGCTGGACGGCACACGAAAGCA
GTGGAGCGAGTTCAAGAAGGATGAGCAGGTGAACGAGGAGCTGGAGACGT
ACAAGAAGGGGAGGCAACGGTATACGGATCGAATGGCGTTTCTTGCGCGC
AGCGATGTTCGCGAGTGGGAGTTTGAGCAACGCGGCAAGCGAAAGCGACG
TTGA
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Coding sequence (CDS) from alignment at NODE_1614_length_9483_cov_3.228492:2604..5707-

>Gcaud2465.t1 ID=Gcaud2465.t1|Name=Gcaud2465.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1023bp|location=Sequence derived from alignment at NODE_1614_length_9483_cov_3.228492:2604..5707- (Gracilaria caudata M_176_S67 male)
ATGGGTAGCTGGGATGTGGATGATGCTGTGGGAGGGATGATATCGGCCGA
TGCAAGTACTGTGTGGAGTGAGGAGGGATTGGACGATGGTGTTGAGCTCT
CTGAGGCGGAGCACATGATGGCAAAGCTAAACGAAAGCTGTTTGCAAATG
GGGATGGACTATCTAGAGGAGATCTCACGTGGATGTGGGGCAGCAGCGGA
AATGGCATGGGCTCGGGCGTTCCCGCATGTGGACCTTCGCCAACTGTTCC
CAAGCGGTGGGATTTCGAGCGAACGAAACCCGTTCAATGAGGTGGACTGC
AGTGTATTAGACGACTACACGAAGAACGCTGACCCAGAGCTCACGAAGGA
GCAACACTGGATGGCCAGAGAGAACGAAGCACGATTGCAAATAGAAGTAG
AATACCTGGAAGAGCTTTCCAGAAAGCATGCTCAGACTTCCAGAGCGCAA
TGGAAAATGGCGTACCCGCACTGCGCACGCTACTACGCGAGTGGCAGCGT
GGGACGTGTTGAGCAACCGGCCCCGAAGAGGGCGCGAGTGTCGCCGCCCA
ACAACAAAAGTATAGACGATATCTGGGCAGAGATGAACAACAACAACAGG
CCGTTGTCACAACCGCAACAACAGCCGGTCGAGCAAAGCACAGCGGCGCG
TGACGACGGCGGTGACGGCGACGGCGTCAGAAACCCTGCGGAAAAGGCGA
CGACGCCGTTCAAGGTGCGCATGTTACACGACCTAGAAAAGGAGCAGAAC
GAGCTCAATCGTCCGCACACATCGGCGGACACAAAAGCGCCGGCGACAGG
ACTGGAGGCGGTGCTGGGGCTGGTGCGCGGCAAGAAGGCGTACACGGTGC
TGGACGGCACACGAAAGCAGTGGAGCGAGTTCAAGAAGGATGAGCAGGTG
AACGAGGAGCTGGAGACGTACAAGAAGGGGAGGCAACGGTATACGGATCG
AATGGCGTTTCTTGCGCGCAGCGATGTTCGCGAGTGGGAGTTTGAGCAAC
GCGGCAAGCGAAAGCGACGTTGA
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