Gcaud2463.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2463.t1
Unique Name	Gcaud2463.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	606

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_947_length_15859_cov_4.413686	contig	NODE_947_length_15859_cov_4.413686:13124..14941 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2463	Gcaud2463	Gracilaria caudata M_176_S67 male	gene	NODE_947_length_15859_cov_4.413686 13124..14941 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2463.t1.start1	Gcaud2463.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_947_length_15859_cov_4.413686 13124..13126 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2463.t1.CDS1	Gcaud2463.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_947_length_15859_cov_4.413686 13124..14941 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2463.t1.exon1	Gcaud2463.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_947_length_15859_cov_4.413686 13124..14941 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2463.t1.stop1	Gcaud2463.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_947_length_15859_cov_4.413686 14939..14941 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2463.t1	Gcaud2463.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_947_length_15859_cov_4.413686 13124..14941 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_947_length_15859_cov_4.413686:13124..14941+
coding sequence from alignment at NODE_947_length_15859_cov_4.413686:13124..14941+

mRNA sequence

>Gcaud2463.t1 ID=Gcaud2463.t1|Name=Gcaud2463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp
MSVVKYTKILLLVIVEFFRGMAWLMAALHISSFWLLSVHVVPVMNIFVVA
FAVFVLVFGLLLVFLYIKYDSSFHPPMLLQTIAETVGLLRATLQYRHLLL
VFGNIVAWFGYFGCRDCWFREDALNSGIGNAVRATLPGLIGPIYCDQADL
SDAVAAMRGLRNKWNDLKEKEKYIVDSATLVYTLSYKHIPVDHNGTMRRL
SEARATDILRKLMASAKSHSYNRLMLWCDGASSCGVRTDQAWVDIGLLPY
AIYRTFRVDTSVHRTCLMSNRLWLDLEKALSRLTCGMDVIDEDVKDTGVS
YYAIKSIAGQGHKSMAAVIRMASRIVQGDYEISAASRESDKSDIMNWAKK
ILMRSGVREMNEALGWSGDPIEALQAKAVLTRISGFSPQKSRTGAEVGKI
CLPTNVREECSSEEAVEGNKVEPWRTEFWLRLLQFSEQEIGKLENEDLEL
TSYRFEEERTGKWEAHVVSLQGDYYISMSYFENVEPVRSYWCRDAGADIR
VRITDQAASRELWLVTNSHVKKIGKDDKWAHKMIEEMFKTRGMFDTPRHS
GPTVLQLEWERCDIRVTEDSAVKWFNDVCKETAKWLHYVNAKIRERNGGI
EYKVP*

spliced messenger RNA

>Gcaud2463.t1 ID=Gcaud2463.t1|Name=Gcaud2463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1818bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:13124..14941+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTTGTCAAATACACCAAGATTTTGTTACTCGTTATTGTTGAGTT
TTTTCGTGGTATGGCTTGGCTTATGGCCGCCCTTCACATCTCTTCATTCT
GGCTTCTATCCGTTCACGTTGTTCCTGTAATGAACATATTTGTGGTAGCA
TTCGCTGTATTCGTGCTGGTCTTTGGCCTGTTGCTTGTTTTCTTGTACAT
CAAATACGATAGTTCATTTCATCCACCAATGCTGCTACAAACCATTGCGG
AAACAGTGGGTTTACTACGCGCAACACTTCAATACCGTCATCTGTTGTTA
GTCTTCGGCAACATTGTGGCGTGGTTTGGATATTTCGGCTGTCGTGATTG
CTGGTTCCGTGAAGATGCGTTGAATTCGGGCATTGGAAACGCAGTCCGAG
CGACTTTACCAGGCCTAATCGGTCCTATTTACTGTGATCAAGCAGACCTA
TCGGATGCAGTGGCAGCCATGAGAGGCTTGAGAAATAAATGGAACGACTT
GAAAGAGAAGGAAAAGTATATTGTCGACTCTGCAACGCTGGTTTATACTC
TGTCCTACAAACACATACCTGTAGATCACAATGGTACAATGAGACGTTTG
AGTGAGGCAAGAGCAACTGATATACTTCGAAAATTGATGGCTTCAGCGAA
AAGCCACAGCTACAACCGACTCATGTTGTGGTGTGATGGTGCCTCTTCTT
GTGGAGTGCGTACGGATCAAGCGTGGGTAGATATAGGGCTGTTGCCGTAC
GCAATATACAGAACGTTCAGAGTGGATACATCAGTGCACAGAACGTGCTT
GATGTCGAATCGTCTTTGGCTCGATTTGGAGAAGGCATTATCTCGGCTAA
CTTGTGGAATGGATGTCATAGACGAGGATGTGAAGGACACGGGTGTTTCA
TATTACGCAATTAAAAGTATTGCCGGGCAAGGACACAAATCTATGGCTGC
TGTGATTCGAATGGCCTCGAGAATCGTACAAGGCGACTATGAGATATCAG
CCGCATCACGAGAATCTGATAAGAGCGACATTATGAATTGGGCGAAGAAG
ATACTGATGCGTTCGGGTGTCAGAGAGATGAATGAAGCTCTTGGATGGTC
AGGAGATCCCATTGAAGCTCTTCAGGCAAAGGCAGTGTTGACGAGGATCT
CAGGTTTTTCTCCACAAAAATCACGAACTGGAGCAGAAGTTGGCAAAATT
TGTTTGCCGACTAATGTCAGGGAAGAATGTTCTAGTGAGGAAGCAGTCGA
AGGGAACAAGGTTGAGCCGTGGCGCACAGAGTTTTGGTTGCGATTGTTAC
AGTTCAGTGAACAAGAGATTGGAAAACTAGAGAACGAGGATTTAGAGCTA
ACGTCGTACAGATTTGAGGAGGAAAGAACAGGGAAGTGGGAGGCACATGT
GGTGAGCCTGCAAGGTGATTATTATATCAGTATGTCGTACTTTGAAAATG
TCGAGCCTGTCAGAAGTTATTGGTGCCGGGATGCTGGTGCTGATATTAGA
GTTCGGATTACAGATCAGGCAGCATCGCGAGAGCTATGGTTGGTAACCAA
CTCTCATGTAAAGAAGATCGGGAAAGATGACAAATGGGCACACAAGATGA
TTGAAGAAATGTTCAAGACTCGAGGAATGTTCGACACCCCAAGACACTCA
GGTCCGACAGTGCTGCAACTAGAGTGGGAACGCTGTGACATTCGCGTCAC
AGAAGACTCGGCTGTAAAGTGGTTCAACGACGTTTGTAAAGAGACGGCTA
AATGGCTGCATTATGTCAATGCAAAGATAAGAGAAAGGAATGGTGGGATC
GAATACAAAGTACCGTAG

protein sequence of Gcaud2463.t1

>Gcaud2463.t1 ID=Gcaud2463.t1|Name=Gcaud2463.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=606bp
MSVVKYTKILLLVIVEFFRGMAWLMAALHISSFWLLSVHVVPVMNIFVVA
FAVFVLVFGLLLVFLYIKYDSSFHPPMLLQTIAETVGLLRATLQYRHLLL
VFGNIVAWFGYFGCRDCWFREDALNSGIGNAVRATLPGLIGPIYCDQADL
SDAVAAMRGLRNKWNDLKEKEKYIVDSATLVYTLSYKHIPVDHNGTMRRL
SEARATDILRKLMASAKSHSYNRLMLWCDGASSCGVRTDQAWVDIGLLPY
AIYRTFRVDTSVHRTCLMSNRLWLDLEKALSRLTCGMDVIDEDVKDTGVS
YYAIKSIAGQGHKSMAAVIRMASRIVQGDYEISAASRESDKSDIMNWAKK
ILMRSGVREMNEALGWSGDPIEALQAKAVLTRISGFSPQKSRTGAEVGKI
CLPTNVREECSSEEAVEGNKVEPWRTEFWLRLLQFSEQEIGKLENEDLEL
TSYRFEEERTGKWEAHVVSLQGDYYISMSYFENVEPVRSYWCRDAGADIR
VRITDQAASRELWLVTNSHVKKIGKDDKWAHKMIEEMFKTRGMFDTPRHS
GPTVLQLEWERCDIRVTEDSAVKWFNDVCKETAKWLHYVNAKIRERNGGI
EYKVP*

mRNA from alignment at NODE_947_length_15859_cov_4.413686:13124..14941+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2463.t1 ID=Gcaud2463.t1|Name=Gcaud2463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1818bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:13124..14941+ (Gracilaria caudata M_176_S67 male)
ATGTCTGTTGTCAAATACACCAAGATTTTGTTACTCGTTATTGTTGAGTT
TTTTCGTGGTATGGCTTGGCTTATGGCCGCCCTTCACATCTCTTCATTCT
GGCTTCTATCCGTTCACGTTGTTCCTGTAATGAACATATTTGTGGTAGCA
TTCGCTGTATTCGTGCTGGTCTTTGGCCTGTTGCTTGTTTTCTTGTACAT
CAAATACGATAGTTCATTTCATCCACCAATGCTGCTACAAACCATTGCGG
AAACAGTGGGTTTACTACGCGCAACACTTCAATACCGTCATCTGTTGTTA
GTCTTCGGCAACATTGTGGCGTGGTTTGGATATTTCGGCTGTCGTGATTG
CTGGTTCCGTGAAGATGCGTTGAATTCGGGCATTGGAAACGCAGTCCGAG
CGACTTTACCAGGCCTAATCGGTCCTATTTACTGTGATCAAGCAGACCTA
TCGGATGCAGTGGCAGCCATGAGAGGCTTGAGAAATAAATGGAACGACTT
GAAAGAGAAGGAAAAGTATATTGTCGACTCTGCAACGCTGGTTTATACTC
TGTCCTACAAACACATACCTGTAGATCACAATGGTACAATGAGACGTTTG
AGTGAGGCAAGAGCAACTGATATACTTCGAAAATTGATGGCTTCAGCGAA
AAGCCACAGCTACAACCGACTCATGTTGTGGTGTGATGGTGCCTCTTCTT
GTGGAGTGCGTACGGATCAAGCGTGGGTAGATATAGGGCTGTTGCCGTAC
GCAATATACAGAACGTTCAGAGTGGATACATCAGTGCACAGAACGTGCTT
GATGTCGAATCGTCTTTGGCTCGATTTGGAGAAGGCATTATCTCGGCTAA
CTTGTGGAATGGATGTCATAGACGAGGATGTGAAGGACACGGGTGTTTCA
TATTACGCAATTAAAAGTATTGCCGGGCAAGGACACAAATCTATGGCTGC
TGTGATTCGAATGGCCTCGAGAATCGTACAAGGCGACTATGAGATATCAG
CCGCATCACGAGAATCTGATAAGAGCGACATTATGAATTGGGCGAAGAAG
ATACTGATGCGTTCGGGTGTCAGAGAGATGAATGAAGCTCTTGGATGGTC
AGGAGATCCCATTGAAGCTCTTCAGGCAAAGGCAGTGTTGACGAGGATCT
CAGGTTTTTCTCCACAAAAATCACGAACTGGAGCAGAAGTTGGCAAAATT
TGTTTGCCGACTAATGTCAGGGAAGAATGTTCTAGTGAGGAAGCAGTCGA
AGGGAACAAGGTTGAGCCGTGGCGCACAGAGTTTTGGTTGCGATTGTTAC
AGTTCAGTGAACAAGAGATTGGAAAACTAGAGAACGAGGATTTAGAGCTA
ACGTCGTACAGATTTGAGGAGGAAAGAACAGGGAAGTGGGAGGCACATGT
GGTGAGCCTGCAAGGTGATTATTATATCAGTATGTCGTACTTTGAAAATG
TCGAGCCTGTCAGAAGTTATTGGTGCCGGGATGCTGGTGCTGATATTAGA
GTTCGGATTACAGATCAGGCAGCATCGCGAGAGCTATGGTTGGTAACCAA
CTCTCATGTAAAGAAGATCGGGAAAGATGACAAATGGGCACACAAGATGA
TTGAAGAAATGTTCAAGACTCGAGGAATGTTCGACACCCCAAGACACTCA
GGTCCGACAGTGCTGCAACTAGAGTGGGAACGCTGTGACATTCGCGTCAC
AGAAGACTCGGCTGTAAAGTGGTTCAACGACGTTTGTAAAGAGACGGCTA
AATGGCTGCATTATGTCAATGCAAAGATAAGAGAAAGGAATGGTGGGATC
GAATACAAAGTACCGTAG

Coding sequence (CDS) from alignment at NODE_947_length_15859_cov_4.413686:13124..14941+

>Gcaud2463.t1 ID=Gcaud2463.t1|Name=Gcaud2463.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1818bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:13124..14941+ (Gracilaria caudata M_176_S67 male)
ATGTCTGTTGTCAAATACACCAAGATTTTGTTACTCGTTATTGTTGAGTT
TTTTCGTGGTATGGCTTGGCTTATGGCCGCCCTTCACATCTCTTCATTCT
GGCTTCTATCCGTTCACGTTGTTCCTGTAATGAACATATTTGTGGTAGCA
TTCGCTGTATTCGTGCTGGTCTTTGGCCTGTTGCTTGTTTTCTTGTACAT
CAAATACGATAGTTCATTTCATCCACCAATGCTGCTACAAACCATTGCGG
AAACAGTGGGTTTACTACGCGCAACACTTCAATACCGTCATCTGTTGTTA
GTCTTCGGCAACATTGTGGCGTGGTTTGGATATTTCGGCTGTCGTGATTG
CTGGTTCCGTGAAGATGCGTTGAATTCGGGCATTGGAAACGCAGTCCGAG
CGACTTTACCAGGCCTAATCGGTCCTATTTACTGTGATCAAGCAGACCTA
TCGGATGCAGTGGCAGCCATGAGAGGCTTGAGAAATAAATGGAACGACTT
GAAAGAGAAGGAAAAGTATATTGTCGACTCTGCAACGCTGGTTTATACTC
TGTCCTACAAACACATACCTGTAGATCACAATGGTACAATGAGACGTTTG
AGTGAGGCAAGAGCAACTGATATACTTCGAAAATTGATGGCTTCAGCGAA
AAGCCACAGCTACAACCGACTCATGTTGTGGTGTGATGGTGCCTCTTCTT
GTGGAGTGCGTACGGATCAAGCGTGGGTAGATATAGGGCTGTTGCCGTAC
GCAATATACAGAACGTTCAGAGTGGATACATCAGTGCACAGAACGTGCTT
GATGTCGAATCGTCTTTGGCTCGATTTGGAGAAGGCATTATCTCGGCTAA
CTTGTGGAATGGATGTCATAGACGAGGATGTGAAGGACACGGGTGTTTCA
TATTACGCAATTAAAAGTATTGCCGGGCAAGGACACAAATCTATGGCTGC
TGTGATTCGAATGGCCTCGAGAATCGTACAAGGCGACTATGAGATATCAG
CCGCATCACGAGAATCTGATAAGAGCGACATTATGAATTGGGCGAAGAAG
ATACTGATGCGTTCGGGTGTCAGAGAGATGAATGAAGCTCTTGGATGGTC
AGGAGATCCCATTGAAGCTCTTCAGGCAAAGGCAGTGTTGACGAGGATCT
CAGGTTTTTCTCCACAAAAATCACGAACTGGAGCAGAAGTTGGCAAAATT
TGTTTGCCGACTAATGTCAGGGAAGAATGTTCTAGTGAGGAAGCAGTCGA
AGGGAACAAGGTTGAGCCGTGGCGCACAGAGTTTTGGTTGCGATTGTTAC
AGTTCAGTGAACAAGAGATTGGAAAACTAGAGAACGAGGATTTAGAGCTA
ACGTCGTACAGATTTGAGGAGGAAAGAACAGGGAAGTGGGAGGCACATGT
GGTGAGCCTGCAAGGTGATTATTATATCAGTATGTCGTACTTTGAAAATG
TCGAGCCTGTCAGAAGTTATTGGTGCCGGGATGCTGGTGCTGATATTAGA
GTTCGGATTACAGATCAGGCAGCATCGCGAGAGCTATGGTTGGTAACCAA
CTCTCATGTAAAGAAGATCGGGAAAGATGACAAATGGGCACACAAGATGA
TTGAAGAAATGTTCAAGACTCGAGGAATGTTCGACACCCCAAGACACTCA
GGTCCGACAGTGCTGCAACTAGAGTGGGAACGCTGTGACATTCGCGTCAC
AGAAGACTCGGCTGTAAAGTGGTTCAACGACGTTTGTAAAGAGACGGCTA
AATGGCTGCATTATGTCAATGCAAAGATAAGAGAAAGGAATGGTGGGATC
GAATACAAAGTACCGTAG