Gcaud2462.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2462.t1
Unique Name	Gcaud2462.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_947_length_15859_cov_4.413686	contig	NODE_947_length_15859_cov_4.413686:5546..6584 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2462	Gcaud2462	Gracilaria caudata M_176_S67 male	gene	NODE_947_length_15859_cov_4.413686 5546..7492 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t1	Gcaud2462.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_947_length_15859_cov_4.413686 5546..6584 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t1.start1	Gcaud2462.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_947_length_15859_cov_4.413686 5546..5548 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t1.CDS1	Gcaud2462.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_947_length_15859_cov_4.413686 5546..6505 +
Gcaud2462.t1.CDS2	Gcaud2462.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_947_length_15859_cov_4.413686 6567..6584 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t1.exon1	Gcaud2462.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_947_length_15859_cov_4.413686 5546..6505 +
Gcaud2462.t1.exon2	Gcaud2462.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_947_length_15859_cov_4.413686 6567..6584 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t1.intron1	Gcaud2462.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_947_length_15859_cov_4.413686 6506..6566 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2462.t1.stop1	Gcaud2462.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_947_length_15859_cov_4.413686 6582..6584 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_947_length_15859_cov_4.413686:5546..6584+
coding sequence from alignment at NODE_947_length_15859_cov_4.413686:5546..6584+

mRNA sequence

>Gcaud2462.t1 ID=Gcaud2462.t1|Name=Gcaud2462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=326bp
MMKAVREEGKGRIITPHALQIDRAGDVIVKMKASVIDSERLTFTVLRKNM
QCALDSLEVTDSRGTTPLVTFSSPTNFDGKKMQSEQAWDAMLREARGARV
QVEAEGGCADGTLMGIQRDFAANDEQVCSTSVVLLSNGEVSVHRVDDIRS
VCFLDDDITERLKRESFLKHSVVETLKHYRIVIVVSGKGEGQVNVCYRQQ
SPYTPAFETFYTMNDTADENGYRKTKRFFTIRNPMHYDIVEVEVQLQTGI
YRRGRYGPAYGDVENPDSSSDSVSERSTEEDDEFFDLASSDSTTSIRAED
GLENNVYNINQKVTLKEGESVKLMW*

spliced messenger RNA

>Gcaud2462.t1 ID=Gcaud2462.t1|Name=Gcaud2462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=978bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:5546..6584+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAAGGCCGTACGAGAAGAAGGCAAAGGAAGAATCATAACTCCCCA
TGCGCTGCAAATTGATCGCGCGGGAGATGTTATCGTGAAGATGAAAGCGA
GCGTTATCGATTCCGAGCGGCTTACATTCACAGTGCTCAGGAAGAACATG
CAATGCGCGCTGGACTCGCTTGAAGTGACTGACAGTCGTGGCACAACCCC
CTTGGTCACGTTCAGCTCCCCGACTAACTTCGATGGGAAAAAGATGCAGT
CTGAGCAAGCGTGGGATGCCATGCTTCGAGAGGCCCGTGGAGCAAGAGTT
CAGGTTGAAGCAGAGGGTGGGTGTGCTGATGGAACCTTAATGGGTATACA
GAGAGACTTCGCCGCAAACGATGAGCAGGTCTGTTCTACGAGCGTGGTAC
TTCTGAGCAATGGAGAAGTTAGTGTTCATCGAGTCGACGACATTCGCTCA
GTTTGCTTCTTGGATGATGATATTACGGAACGACTAAAGCGAGAAAGCTT
TTTGAAGCATTCTGTGGTAGAGACGTTGAAGCATTATCGGATTGTTATTG
TTGTCTCCGGCAAGGGAGAAGGTCAGGTGAATGTGTGCTATCGCCAGCAA
AGCCCCTATACACCTGCGTTCGAGACTTTCTACACCATGAATGACACAGC
CGATGAGAATGGGTACAGGAAAACGAAGCGCTTCTTCACCATAAGAAATC
CAATGCATTATGACATAGTAGAGGTTGAGGTGCAGCTTCAAACTGGAATA
TATAGACGTGGCAGGTATGGTCCTGCTTACGGTGACGTTGAGAATCCGGA
CTCTAGTTCGGACAGCGTCTCAGAGAGATCGACAGAGGAGGACGACGAAT
TTTTTGACCTGGCGAGCAGTGATTCTACAACTTCAATCAGGGCAGAGGAC
GGTTTAGAGAACAACGTATACAATATCAATCAGAAAGTGACCTTGAAGGA
AGGAGAGTCGGTAAAACTAATGTGGTAG

protein sequence of Gcaud2462.t1

>Gcaud2462.t1 ID=Gcaud2462.t1|Name=Gcaud2462.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=326bp
MMKAVREEGKGRIITPHALQIDRAGDVIVKMKASVIDSERLTFTVLRKNM
QCALDSLEVTDSRGTTPLVTFSSPTNFDGKKMQSEQAWDAMLREARGARV
QVEAEGGCADGTLMGIQRDFAANDEQVCSTSVVLLSNGEVSVHRVDDIRS
VCFLDDDITERLKRESFLKHSVVETLKHYRIVIVVSGKGEGQVNVCYRQQ
SPYTPAFETFYTMNDTADENGYRKTKRFFTIRNPMHYDIVEVEVQLQTGI
YRRGRYGPAYGDVENPDSSSDSVSERSTEEDDEFFDLASSDSTTSIRAED
GLENNVYNINQKVTLKEGESVKLMW*

mRNA from alignment at NODE_947_length_15859_cov_4.413686:5546..6584+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2462.t1 ID=Gcaud2462.t1|Name=Gcaud2462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1039bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:5546..6584+ (Gracilaria caudata M_176_S67 male)
ATGATGAAGGCCGTACGAGAAGAAGGCAAAGGAAGAATCATAACTCCCCA
TGCGCTGCAAATTGATCGCGCGGGAGATGTTATCGTGAAGATGAAAGCGA
GCGTTATCGATTCCGAGCGGCTTACATTCACAGTGCTCAGGAAGAACATG
CAATGCGCGCTGGACTCGCTTGAAGTGACTGACAGTCGTGGCACAACCCC
CTTGGTCACGTTCAGCTCCCCGACTAACTTCGATGGGAAAAAGATGCAGT
CTGAGCAAGCGTGGGATGCCATGCTTCGAGAGGCCCGTGGAGCAAGAGTT
CAGGTTGAAGCAGAGGGTGGGTGTGCTGATGGAACCTTAATGGGTATACA
GAGAGACTTCGCCGCAAACGATGAGCAGGTCTGTTCTACGAGCGTGGTAC
TTCTGAGCAATGGAGAAGTTAGTGTTCATCGAGTCGACGACATTCGCTCA
GTTTGCTTCTTGGATGATGATATTACGGAACGACTAAAGCGAGAAAGCTT
TTTGAAGCATTCTGTGGTAGAGACGTTGAAGCATTATCGGATTGTTATTG
TTGTCTCCGGCAAGGGAGAAGGTCAGGTGAATGTGTGCTATCGCCAGCAA
AGCCCCTATACACCTGCGTTCGAGACTTTCTACACCATGAATGACACAGC
CGATGAGAATGGGTACAGGAAAACGAAGCGCTTCTTCACCATAAGAAATC
CAATGCATTATGACATAGTAGAGGTTGAGGTGCAGCTTCAAACTGGAATA
TATAGACGTGGCAGGTATGGTCCTGCTTACGGTGACGTTGAGAATCCGGA
CTCTAGTTCGGACAGCGTCTCAGAGAGATCGACAGAGGAGGACGACGAAT
TTTTTGACCTGGCGAGCAGTGATTCTACAACTTCAATCAGGGCAGAGGAC
GGTTTAGAGAACAACGTATACAATATCAATCAGAAAGTGACCTTGAAGGA
AGGAGAGTCGGTAAGAATTTTTCACTCTGAGACCGCTGTGAAGTGTGACT
TTCTATTTTCCACTGAGATAGGTAAAACTAATGTGGTAG

Coding sequence (CDS) from alignment at NODE_947_length_15859_cov_4.413686:5546..6584+

>Gcaud2462.t1 ID=Gcaud2462.t1|Name=Gcaud2462.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=978bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:5546..6584+ (Gracilaria caudata M_176_S67 male)
ATGATGAAGGCCGTACGAGAAGAAGGCAAAGGAAGAATCATAACTCCCCA
TGCGCTGCAAATTGATCGCGCGGGAGATGTTATCGTGAAGATGAAAGCGA
GCGTTATCGATTCCGAGCGGCTTACATTCACAGTGCTCAGGAAGAACATG
CAATGCGCGCTGGACTCGCTTGAAGTGACTGACAGTCGTGGCACAACCCC
CTTGGTCACGTTCAGCTCCCCGACTAACTTCGATGGGAAAAAGATGCAGT
CTGAGCAAGCGTGGGATGCCATGCTTCGAGAGGCCCGTGGAGCAAGAGTT
CAGGTTGAAGCAGAGGGTGGGTGTGCTGATGGAACCTTAATGGGTATACA
GAGAGACTTCGCCGCAAACGATGAGCAGGTCTGTTCTACGAGCGTGGTAC
TTCTGAGCAATGGAGAAGTTAGTGTTCATCGAGTCGACGACATTCGCTCA
GTTTGCTTCTTGGATGATGATATTACGGAACGACTAAAGCGAGAAAGCTT
TTTGAAGCATTCTGTGGTAGAGACGTTGAAGCATTATCGGATTGTTATTG
TTGTCTCCGGCAAGGGAGAAGGTCAGGTGAATGTGTGCTATCGCCAGCAA
AGCCCCTATACACCTGCGTTCGAGACTTTCTACACCATGAATGACACAGC
CGATGAGAATGGGTACAGGAAAACGAAGCGCTTCTTCACCATAAGAAATC
CAATGCATTATGACATAGTAGAGGTTGAGGTGCAGCTTCAAACTGGAATA
TATAGACGTGGCAGGTATGGTCCTGCTTACGGTGACGTTGAGAATCCGGA
CTCTAGTTCGGACAGCGTCTCAGAGAGATCGACAGAGGAGGACGACGAAT
TTTTTGACCTGGCGAGCAGTGATTCTACAACTTCAATCAGGGCAGAGGAC
GGTTTAGAGAACAACGTATACAATATCAATCAGAAAGTGACCTTGAAGGA
AGGAGAGTCGGTAAAACTAATGTGGTAG