Gcaud2461.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2461.t1
Unique Name	Gcaud2461.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	685

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_947_length_15859_cov_4.413686	contig	NODE_947_length_15859_cov_4.413686:2654..4708 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2461	Gcaud2461	Gracilaria caudata M_176_S67 male	gene	NODE_947_length_15859_cov_4.413686 2654..4708 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2461.t1.stop1	Gcaud2461.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_947_length_15859_cov_4.413686 2654..2656 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2461.t1.CDS1	Gcaud2461.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_947_length_15859_cov_4.413686 2654..4708 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2461.t1.exon1	Gcaud2461.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_947_length_15859_cov_4.413686 2654..4708 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2461.t1.start1	Gcaud2461.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_947_length_15859_cov_4.413686 4706..4708 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2461.t1	Gcaud2461.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_947_length_15859_cov_4.413686 2654..4708 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_947_length_15859_cov_4.413686:2654..4708-
coding sequence from alignment at NODE_947_length_15859_cov_4.413686:2654..4708-

mRNA sequence

>Gcaud2461.t1 ID=Gcaud2461.t1|Name=Gcaud2461.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=685bp
MNQKLDQSVTKTTVLTPHLLQVHRGGYVEVNMRASVVDSERLCFDVPRKQ
IEDALCSMVVYDTRGSTPNVFVHSPVTVKVAKEGSEQAWTKVLTRYQGTK
VGIETAQAKSEGTLVGFRQEHYYSQENFDAGVLNHSKFFVITRSSSKVSF
HPLESIKALNFQDDAICEALSEDSFMKQYVVDRKNCYTIEVVAQGKGKGD
VEVRYSIWSPYSPAYEVSYILAVDEDEDIFAFGVRPDRNLKCYFTFHNPL
QCHLSDVRIVFCSGQIRFNRSYWSYANKPQDEKAQGNDSVSEKTEGNDNE
ESDKEEDEENFVDEFSDVSSDRLSVMMNFKDQGNVMHELPEKVSLKMNES
ARLLMFEKSCVSGIVRTIETDTSDPFGGVYILLHNTTNEKLEGGHLQVKS
TCAVLSQLHVIIPLAPNDFVLRKLARYADFEWKRYKQVDIGDARSFHVSE
NHLSVFSEKTKTMMGRIQNKGNTEVEILVAHELRSGANWKEAVECFLTRG
SWVHASQGERIEPYSYSYGFRGMTYLLKLAPHETCWVTVREKLTAKHKQV
NLEDLESKTVAYLEIAQLLPSTALQLLRQLLSLRRESERLKHERWLHQEK
LKEIEAYRIGSREKTDGQGGEKDQKEEEGRKSAEDKLQEYHERSSRASKA
RAVLEDLMDDIERRLFEVNSEMASMRRQLGNLTA*

spliced messenger RNA

>Gcaud2461.t1 ID=Gcaud2461.t1|Name=Gcaud2461.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2055bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:2654..4708- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCAGAAACTAGACCAGTCTGTTACGAAAACAACAGTCCTCACTCC
GCATTTGCTACAAGTTCACCGTGGGGGTTATGTTGAGGTGAATATGCGAG
CATCAGTTGTTGACTCTGAAAGACTATGTTTTGATGTGCCTCGGAAACAA
ATTGAGGACGCACTCTGCTCGATGGTTGTGTATGATACCCGTGGAAGCAC
GCCAAACGTCTTTGTTCATTCTCCGGTCACAGTCAAGGTTGCAAAGGAAG
GGTCAGAACAAGCATGGACAAAGGTATTGACCCGTTACCAAGGCACGAAA
GTTGGAATCGAAACCGCTCAAGCTAAATCAGAGGGGACACTTGTCGGCTT
TCGTCAAGAGCATTACTATTCGCAAGAGAACTTTGATGCTGGTGTTTTGA
ATCATTCAAAGTTTTTCGTCATCACGCGCAGTAGTTCTAAGGTGTCCTTT
CACCCTCTTGAATCAATCAAGGCTCTGAACTTCCAAGACGATGCAATATG
TGAAGCACTCTCGGAGGACAGTTTCATGAAGCAGTACGTGGTAGACAGAA
AGAACTGCTACACGATTGAAGTTGTTGCACAGGGTAAGGGAAAGGGCGAT
GTTGAAGTCCGATATTCAATATGGAGCCCTTACTCGCCAGCGTACGAAGT
TAGTTACATTCTTGCTGTGGATGAAGATGAGGACATCTTTGCGTTTGGCG
TGCGCCCTGATCGGAATCTCAAGTGCTACTTTACCTTTCACAATCCCCTG
CAGTGTCATCTTTCGGATGTGCGCATTGTATTCTGCTCCGGACAAATACG
GTTCAATCGGTCATACTGGTCATATGCCAATAAGCCTCAGGACGAAAAGG
CCCAGGGCAATGATTCTGTTTCAGAAAAAACGGAGGGCAACGATAACGAA
GAGAGTGACAAGGAAGAGGACGAAGAAAACTTTGTTGATGAGTTTAGTGA
TGTATCATCTGATAGGTTATCTGTGATGATGAACTTCAAAGACCAAGGCA
ACGTAATGCATGAGCTTCCGGAGAAGGTGAGCCTGAAGATGAATGAATCG
GCTAGATTGTTGATGTTTGAGAAATCCTGTGTCTCTGGAATAGTACGGAC
CATTGAAACCGACACATCAGATCCTTTTGGAGGTGTGTACATTTTATTGC
ACAACACCACAAACGAGAAGCTCGAGGGGGGGCATCTTCAGGTGAAGTCG
ACCTGCGCTGTCCTATCACAGCTGCATGTTATTATTCCGTTGGCTCCCAA
TGATTTCGTGTTGCGAAAGCTTGCAAGATACGCGGATTTTGAATGGAAGC
GATATAAACAGGTAGACATTGGCGACGCGCGCTCATTTCACGTGTCGGAG
AACCATTTGTCTGTGTTCAGCGAGAAGACGAAGACGATGATGGGGAGGAT
TCAGAACAAGGGTAACACTGAGGTGGAGATCCTTGTGGCGCATGAACTGC
GTTCCGGAGCGAATTGGAAGGAAGCAGTTGAATGCTTTCTTACTAGAGGG
AGCTGGGTGCATGCTTCTCAGGGAGAAAGAATAGAACCATATTCATATTC
TTACGGCTTCAGAGGGATGACTTACTTGCTCAAACTGGCGCCGCATGAGA
CTTGCTGGGTGACAGTGCGAGAGAAATTGACCGCGAAACATAAGCAGGTG
AATCTAGAGGACTTAGAAAGCAAAACCGTGGCTTATTTGGAGATAGCACA
GCTGCTTCCCTCAACAGCTCTGCAATTGCTTCGCCAACTGTTGTCGTTGA
GAAGGGAGTCGGAGCGACTGAAGCACGAACGCTGGCTGCATCAAGAGAAA
CTGAAGGAGATCGAGGCTTATCGCATCGGCAGCCGTGAAAAGACTGACGG
ACAAGGTGGCGAGAAAGACCAGAAGGAAGAAGAAGGTCGCAAGTCGGCGG
AGGATAAGCTGCAAGAGTATCATGAACGCTCTTCAAGAGCGAGCAAGGCA
CGTGCAGTGCTGGAGGACTTGATGGACGACATTGAGCGCCGACTGTTTGA
GGTGAACAGCGAGATGGCGAGCATGAGGAGGCAGCTGGGCAACTTGACGG
CGTGA

protein sequence of Gcaud2461.t1

>Gcaud2461.t1 ID=Gcaud2461.t1|Name=Gcaud2461.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=685bp
MNQKLDQSVTKTTVLTPHLLQVHRGGYVEVNMRASVVDSERLCFDVPRKQ
IEDALCSMVVYDTRGSTPNVFVHSPVTVKVAKEGSEQAWTKVLTRYQGTK
VGIETAQAKSEGTLVGFRQEHYYSQENFDAGVLNHSKFFVITRSSSKVSF
HPLESIKALNFQDDAICEALSEDSFMKQYVVDRKNCYTIEVVAQGKGKGD
VEVRYSIWSPYSPAYEVSYILAVDEDEDIFAFGVRPDRNLKCYFTFHNPL
QCHLSDVRIVFCSGQIRFNRSYWSYANKPQDEKAQGNDSVSEKTEGNDNE
ESDKEEDEENFVDEFSDVSSDRLSVMMNFKDQGNVMHELPEKVSLKMNES
ARLLMFEKSCVSGIVRTIETDTSDPFGGVYILLHNTTNEKLEGGHLQVKS
TCAVLSQLHVIIPLAPNDFVLRKLARYADFEWKRYKQVDIGDARSFHVSE
NHLSVFSEKTKTMMGRIQNKGNTEVEILVAHELRSGANWKEAVECFLTRG
SWVHASQGERIEPYSYSYGFRGMTYLLKLAPHETCWVTVREKLTAKHKQV
NLEDLESKTVAYLEIAQLLPSTALQLLRQLLSLRRESERLKHERWLHQEK
LKEIEAYRIGSREKTDGQGGEKDQKEEEGRKSAEDKLQEYHERSSRASKA
RAVLEDLMDDIERRLFEVNSEMASMRRQLGNLTA*

mRNA from alignment at NODE_947_length_15859_cov_4.413686:2654..4708-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2461.t1 ID=Gcaud2461.t1|Name=Gcaud2461.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2055bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:2654..4708- (Gracilaria caudata M_176_S67 male)
ATGAATCAGAAACTAGACCAGTCTGTTACGAAAACAACAGTCCTCACTCC
GCATTTGCTACAAGTTCACCGTGGGGGTTATGTTGAGGTGAATATGCGAG
CATCAGTTGTTGACTCTGAAAGACTATGTTTTGATGTGCCTCGGAAACAA
ATTGAGGACGCACTCTGCTCGATGGTTGTGTATGATACCCGTGGAAGCAC
GCCAAACGTCTTTGTTCATTCTCCGGTCACAGTCAAGGTTGCAAAGGAAG
GGTCAGAACAAGCATGGACAAAGGTATTGACCCGTTACCAAGGCACGAAA
GTTGGAATCGAAACCGCTCAAGCTAAATCAGAGGGGACACTTGTCGGCTT
TCGTCAAGAGCATTACTATTCGCAAGAGAACTTTGATGCTGGTGTTTTGA
ATCATTCAAAGTTTTTCGTCATCACGCGCAGTAGTTCTAAGGTGTCCTTT
CACCCTCTTGAATCAATCAAGGCTCTGAACTTCCAAGACGATGCAATATG
TGAAGCACTCTCGGAGGACAGTTTCATGAAGCAGTACGTGGTAGACAGAA
AGAACTGCTACACGATTGAAGTTGTTGCACAGGGTAAGGGAAAGGGCGAT
GTTGAAGTCCGATATTCAATATGGAGCCCTTACTCGCCAGCGTACGAAGT
TAGTTACATTCTTGCTGTGGATGAAGATGAGGACATCTTTGCGTTTGGCG
TGCGCCCTGATCGGAATCTCAAGTGCTACTTTACCTTTCACAATCCCCTG
CAGTGTCATCTTTCGGATGTGCGCATTGTATTCTGCTCCGGACAAATACG
GTTCAATCGGTCATACTGGTCATATGCCAATAAGCCTCAGGACGAAAAGG
CCCAGGGCAATGATTCTGTTTCAGAAAAAACGGAGGGCAACGATAACGAA
GAGAGTGACAAGGAAGAGGACGAAGAAAACTTTGTTGATGAGTTTAGTGA
TGTATCATCTGATAGGTTATCTGTGATGATGAACTTCAAAGACCAAGGCA
ACGTAATGCATGAGCTTCCGGAGAAGGTGAGCCTGAAGATGAATGAATCG
GCTAGATTGTTGATGTTTGAGAAATCCTGTGTCTCTGGAATAGTACGGAC
CATTGAAACCGACACATCAGATCCTTTTGGAGGTGTGTACATTTTATTGC
ACAACACCACAAACGAGAAGCTCGAGGGGGGGCATCTTCAGGTGAAGTCG
ACCTGCGCTGTCCTATCACAGCTGCATGTTATTATTCCGTTGGCTCCCAA
TGATTTCGTGTTGCGAAAGCTTGCAAGATACGCGGATTTTGAATGGAAGC
GATATAAACAGGTAGACATTGGCGACGCGCGCTCATTTCACGTGTCGGAG
AACCATTTGTCTGTGTTCAGCGAGAAGACGAAGACGATGATGGGGAGGAT
TCAGAACAAGGGTAACACTGAGGTGGAGATCCTTGTGGCGCATGAACTGC
GTTCCGGAGCGAATTGGAAGGAAGCAGTTGAATGCTTTCTTACTAGAGGG
AGCTGGGTGCATGCTTCTCAGGGAGAAAGAATAGAACCATATTCATATTC
TTACGGCTTCAGAGGGATGACTTACTTGCTCAAACTGGCGCCGCATGAGA
CTTGCTGGGTGACAGTGCGAGAGAAATTGACCGCGAAACATAAGCAGGTG
AATCTAGAGGACTTAGAAAGCAAAACCGTGGCTTATTTGGAGATAGCACA
GCTGCTTCCCTCAACAGCTCTGCAATTGCTTCGCCAACTGTTGTCGTTGA
GAAGGGAGTCGGAGCGACTGAAGCACGAACGCTGGCTGCATCAAGAGAAA
CTGAAGGAGATCGAGGCTTATCGCATCGGCAGCCGTGAAAAGACTGACGG
ACAAGGTGGCGAGAAAGACCAGAAGGAAGAAGAAGGTCGCAAGTCGGCGG
AGGATAAGCTGCAAGAGTATCATGAACGCTCTTCAAGAGCGAGCAAGGCA
CGTGCAGTGCTGGAGGACTTGATGGACGACATTGAGCGCCGACTGTTTGA
GGTGAACAGCGAGATGGCGAGCATGAGGAGGCAGCTGGGCAACTTGACGG
CGTGA

Coding sequence (CDS) from alignment at NODE_947_length_15859_cov_4.413686:2654..4708-

>Gcaud2461.t1 ID=Gcaud2461.t1|Name=Gcaud2461.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2055bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:2654..4708- (Gracilaria caudata M_176_S67 male)
ATGAATCAGAAACTAGACCAGTCTGTTACGAAAACAACAGTCCTCACTCC
GCATTTGCTACAAGTTCACCGTGGGGGTTATGTTGAGGTGAATATGCGAG
CATCAGTTGTTGACTCTGAAAGACTATGTTTTGATGTGCCTCGGAAACAA
ATTGAGGACGCACTCTGCTCGATGGTTGTGTATGATACCCGTGGAAGCAC
GCCAAACGTCTTTGTTCATTCTCCGGTCACAGTCAAGGTTGCAAAGGAAG
GGTCAGAACAAGCATGGACAAAGGTATTGACCCGTTACCAAGGCACGAAA
GTTGGAATCGAAACCGCTCAAGCTAAATCAGAGGGGACACTTGTCGGCTT
TCGTCAAGAGCATTACTATTCGCAAGAGAACTTTGATGCTGGTGTTTTGA
ATCATTCAAAGTTTTTCGTCATCACGCGCAGTAGTTCTAAGGTGTCCTTT
CACCCTCTTGAATCAATCAAGGCTCTGAACTTCCAAGACGATGCAATATG
TGAAGCACTCTCGGAGGACAGTTTCATGAAGCAGTACGTGGTAGACAGAA
AGAACTGCTACACGATTGAAGTTGTTGCACAGGGTAAGGGAAAGGGCGAT
GTTGAAGTCCGATATTCAATATGGAGCCCTTACTCGCCAGCGTACGAAGT
TAGTTACATTCTTGCTGTGGATGAAGATGAGGACATCTTTGCGTTTGGCG
TGCGCCCTGATCGGAATCTCAAGTGCTACTTTACCTTTCACAATCCCCTG
CAGTGTCATCTTTCGGATGTGCGCATTGTATTCTGCTCCGGACAAATACG
GTTCAATCGGTCATACTGGTCATATGCCAATAAGCCTCAGGACGAAAAGG
CCCAGGGCAATGATTCTGTTTCAGAAAAAACGGAGGGCAACGATAACGAA
GAGAGTGACAAGGAAGAGGACGAAGAAAACTTTGTTGATGAGTTTAGTGA
TGTATCATCTGATAGGTTATCTGTGATGATGAACTTCAAAGACCAAGGCA
ACGTAATGCATGAGCTTCCGGAGAAGGTGAGCCTGAAGATGAATGAATCG
GCTAGATTGTTGATGTTTGAGAAATCCTGTGTCTCTGGAATAGTACGGAC
CATTGAAACCGACACATCAGATCCTTTTGGAGGTGTGTACATTTTATTGC
ACAACACCACAAACGAGAAGCTCGAGGGGGGGCATCTTCAGGTGAAGTCG
ACCTGCGCTGTCCTATCACAGCTGCATGTTATTATTCCGTTGGCTCCCAA
TGATTTCGTGTTGCGAAAGCTTGCAAGATACGCGGATTTTGAATGGAAGC
GATATAAACAGGTAGACATTGGCGACGCGCGCTCATTTCACGTGTCGGAG
AACCATTTGTCTGTGTTCAGCGAGAAGACGAAGACGATGATGGGGAGGAT
TCAGAACAAGGGTAACACTGAGGTGGAGATCCTTGTGGCGCATGAACTGC
GTTCCGGAGCGAATTGGAAGGAAGCAGTTGAATGCTTTCTTACTAGAGGG
AGCTGGGTGCATGCTTCTCAGGGAGAAAGAATAGAACCATATTCATATTC
TTACGGCTTCAGAGGGATGACTTACTTGCTCAAACTGGCGCCGCATGAGA
CTTGCTGGGTGACAGTGCGAGAGAAATTGACCGCGAAACATAAGCAGGTG
AATCTAGAGGACTTAGAAAGCAAAACCGTGGCTTATTTGGAGATAGCACA
GCTGCTTCCCTCAACAGCTCTGCAATTGCTTCGCCAACTGTTGTCGTTGA
GAAGGGAGTCGGAGCGACTGAAGCACGAACGCTGGCTGCATCAAGAGAAA
CTGAAGGAGATCGAGGCTTATCGCATCGGCAGCCGTGAAAAGACTGACGG
ACAAGGTGGCGAGAAAGACCAGAAGGAAGAAGAAGGTCGCAAGTCGGCGG
AGGATAAGCTGCAAGAGTATCATGAACGCTCTTCAAGAGCGAGCAAGGCA
CGTGCAGTGCTGGAGGACTTGATGGACGACATTGAGCGCCGACTGTTTGA
GGTGAACAGCGAGATGGCGAGCATGAGGAGGCAGCTGGGCAACTTGACGG
CGTGA