Gcaud2460.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2460.t1
Unique NameGcaud2460.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_947_length_15859_cov_4.413686contigNODE_947_length_15859_cov_4.413686:932..1873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog266117.Rxyl_2848
PFAMsAA_kinase
Max annot lvl84995|Rubrobacteria
KEGG rclassRC00002,RC00043,RC02803,RC02804
KEGG koko:K00926
KEGG ReactionR00150,R01395
KEGG Pathwayko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200
Evalue3.15e-134
EggNOG OGsCOG0549@1|root,COG0549@2|Bacteria,2HWQ6@201174|Actinobacteria,4CQAT@84995|Rubrobacteria
EC2.7.2.2
DescriptionAmino acid kinase family
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2460Gcaud2460Gracilaria caudata M_176_S67 malegeneNODE_947_length_15859_cov_4.413686 932..1873 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2460.t1.stop1Gcaud2460.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_947_length_15859_cov_4.413686 932..934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2460.t1.CDS1Gcaud2460.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_947_length_15859_cov_4.413686 932..1873 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2460.t1.exon1Gcaud2460.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_947_length_15859_cov_4.413686 932..1873 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2460.t1.start1Gcaud2460.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_947_length_15859_cov_4.413686 1871..1873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2460.t1Gcaud2460.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_947_length_15859_cov_4.413686 932..1873 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2460.t1 ID=Gcaud2460.t1|Name=Gcaud2460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=314bp
MATRYAVVAVGGNALIKDKNKKSIQDQYAAACETVGHVINMIEDGWNVVL
THGNGPQVGFEMRRSELAAHELHTVPLDYCDADTQGAIGYMFQRAMRNEF
KRRDMDRMVATVVSLVRVNADDPAFDNPTKPIGSFLDEKTALQRMKEGKT
VVEDAGRGWRRVVPSPLPVEILEAEAIKTLIKSGVVVIATGGGGIPVVYS
DAGDLVGIEAVIDKDFASSLLANVIGVDLLLFCTAVEKVALNFNTPNEVW
LDKMTIAEAKQYVKEGHFAPGSMKPKIEACIKFLENGGKEVLITNPESIP
RALRGETGTRIVP*
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spliced messenger RNA

>Gcaud2460.t1 ID=Gcaud2460.t1|Name=Gcaud2460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=942bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:932..1873- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACGCGCTATGCAGTCGTCGCGGTGGGTGGAAATGCGCTCATCAA
GGACAAGAACAAGAAGAGCATCCAGGATCAGTATGCCGCCGCCTGCGAGA
CGGTCGGTCATGTCATCAACATGATCGAAGATGGCTGGAACGTGGTGCTC
ACGCATGGAAACGGACCGCAGGTGGGCTTCGAAATGCGCCGTTCCGAACT
GGCCGCTCATGAGCTACATACCGTGCCTCTGGACTATTGCGACGCAGACA
CGCAGGGCGCGATTGGCTACATGTTTCAACGCGCGATGCGCAACGAGTTC
AAGCGTCGTGACATGGACAGAATGGTTGCCACGGTGGTGTCGTTGGTGCG
AGTCAATGCGGATGATCCTGCGTTTGACAACCCTACCAAGCCGATTGGCT
CCTTTCTGGATGAGAAGACGGCGCTACAACGCATGAAGGAGGGGAAGACT
GTAGTTGAGGATGCGGGTCGTGGTTGGCGCCGCGTGGTGCCCTCTCCTTT
GCCAGTGGAAATACTCGAAGCGGAGGCGATCAAAACGTTAATCAAGTCGG
GCGTGGTGGTCATCGCCACGGGGGGTGGAGGCATTCCAGTTGTATACAGC
GATGCAGGTGACTTGGTCGGCATCGAAGCTGTCATTGATAAGGACTTTGC
TTCTTCGTTGCTTGCCAATGTCATTGGTGTGGACTTGTTGCTGTTCTGCA
CCGCCGTGGAGAAGGTCGCGCTTAATTTCAATACGCCCAACGAGGTTTGG
CTTGATAAGATGACCATTGCAGAGGCCAAACAATACGTCAAGGAAGGACA
CTTTGCACCCGGGAGCATGAAGCCCAAAATCGAGGCGTGCATCAAGTTCC
TTGAGAACGGTGGCAAGGAGGTTCTTATCACCAATCCGGAGAGTATACCG
CGTGCTCTTAGGGGCGAAACTGGCACTCGGATCGTACCATAG
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protein sequence of Gcaud2460.t1

>Gcaud2460.t1 ID=Gcaud2460.t1|Name=Gcaud2460.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=314bp
MATRYAVVAVGGNALIKDKNKKSIQDQYAAACETVGHVINMIEDGWNVVL
THGNGPQVGFEMRRSELAAHELHTVPLDYCDADTQGAIGYMFQRAMRNEF
KRRDMDRMVATVVSLVRVNADDPAFDNPTKPIGSFLDEKTALQRMKEGKT
VVEDAGRGWRRVVPSPLPVEILEAEAIKTLIKSGVVVIATGGGGIPVVYS
DAGDLVGIEAVIDKDFASSLLANVIGVDLLLFCTAVEKVALNFNTPNEVW
LDKMTIAEAKQYVKEGHFAPGSMKPKIEACIKFLENGGKEVLITNPESIP
RALRGETGTRIVP*
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mRNA from alignment at NODE_947_length_15859_cov_4.413686:932..1873-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2460.t1 ID=Gcaud2460.t1|Name=Gcaud2460.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=942bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:932..1873- (Gracilaria caudata M_176_S67 male)
ATGGCAACGCGCTATGCAGTCGTCGCGGTGGGTGGAAATGCGCTCATCAA
GGACAAGAACAAGAAGAGCATCCAGGATCAGTATGCCGCCGCCTGCGAGA
CGGTCGGTCATGTCATCAACATGATCGAAGATGGCTGGAACGTGGTGCTC
ACGCATGGAAACGGACCGCAGGTGGGCTTCGAAATGCGCCGTTCCGAACT
GGCCGCTCATGAGCTACATACCGTGCCTCTGGACTATTGCGACGCAGACA
CGCAGGGCGCGATTGGCTACATGTTTCAACGCGCGATGCGCAACGAGTTC
AAGCGTCGTGACATGGACAGAATGGTTGCCACGGTGGTGTCGTTGGTGCG
AGTCAATGCGGATGATCCTGCGTTTGACAACCCTACCAAGCCGATTGGCT
CCTTTCTGGATGAGAAGACGGCGCTACAACGCATGAAGGAGGGGAAGACT
GTAGTTGAGGATGCGGGTCGTGGTTGGCGCCGCGTGGTGCCCTCTCCTTT
GCCAGTGGAAATACTCGAAGCGGAGGCGATCAAAACGTTAATCAAGTCGG
GCGTGGTGGTCATCGCCACGGGGGGTGGAGGCATTCCAGTTGTATACAGC
GATGCAGGTGACTTGGTCGGCATCGAAGCTGTCATTGATAAGGACTTTGC
TTCTTCGTTGCTTGCCAATGTCATTGGTGTGGACTTGTTGCTGTTCTGCA
CCGCCGTGGAGAAGGTCGCGCTTAATTTCAATACGCCCAACGAGGTTTGG
CTTGATAAGATGACCATTGCAGAGGCCAAACAATACGTCAAGGAAGGACA
CTTTGCACCCGGGAGCATGAAGCCCAAAATCGAGGCGTGCATCAAGTTCC
TTGAGAACGGTGGCAAGGAGGTTCTTATCACCAATCCGGAGAGTATACCG
CGTGCTCTTAGGGGCGAAACTGGCACTCGGATCGTACCATAG
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Coding sequence (CDS) from alignment at NODE_947_length_15859_cov_4.413686:932..1873-

>Gcaud2460.t1 ID=Gcaud2460.t1|Name=Gcaud2460.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=942bp|location=Sequence derived from alignment at NODE_947_length_15859_cov_4.413686:932..1873- (Gracilaria caudata M_176_S67 male)
ATGGCAACGCGCTATGCAGTCGTCGCGGTGGGTGGAAATGCGCTCATCAA
GGACAAGAACAAGAAGAGCATCCAGGATCAGTATGCCGCCGCCTGCGAGA
CGGTCGGTCATGTCATCAACATGATCGAAGATGGCTGGAACGTGGTGCTC
ACGCATGGAAACGGACCGCAGGTGGGCTTCGAAATGCGCCGTTCCGAACT
GGCCGCTCATGAGCTACATACCGTGCCTCTGGACTATTGCGACGCAGACA
CGCAGGGCGCGATTGGCTACATGTTTCAACGCGCGATGCGCAACGAGTTC
AAGCGTCGTGACATGGACAGAATGGTTGCCACGGTGGTGTCGTTGGTGCG
AGTCAATGCGGATGATCCTGCGTTTGACAACCCTACCAAGCCGATTGGCT
CCTTTCTGGATGAGAAGACGGCGCTACAACGCATGAAGGAGGGGAAGACT
GTAGTTGAGGATGCGGGTCGTGGTTGGCGCCGCGTGGTGCCCTCTCCTTT
GCCAGTGGAAATACTCGAAGCGGAGGCGATCAAAACGTTAATCAAGTCGG
GCGTGGTGGTCATCGCCACGGGGGGTGGAGGCATTCCAGTTGTATACAGC
GATGCAGGTGACTTGGTCGGCATCGAAGCTGTCATTGATAAGGACTTTGC
TTCTTCGTTGCTTGCCAATGTCATTGGTGTGGACTTGTTGCTGTTCTGCA
CCGCCGTGGAGAAGGTCGCGCTTAATTTCAATACGCCCAACGAGGTTTGG
CTTGATAAGATGACCATTGCAGAGGCCAAACAATACGTCAAGGAAGGACA
CTTTGCACCCGGGAGCATGAAGCCCAAAATCGAGGCGTGCATCAAGTTCC
TTGAGAACGGTGGCAAGGAGGTTCTTATCACCAATCCGGAGAGTATACCG
CGTGCTCTTAGGGGCGAAACTGGCACTCGGATCGTACCATAG
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