Gcaud246.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud246.t1
Unique Name	Gcaud246.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	395

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1048_length_14702_cov_4.665047	contig	NODE_1048_length_14702_cov_4.665047:2750..3934 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35754.JNYJ01000021_gene536
PFAMs	Calx-beta,HYR,VWA
Max annot lvl	201174\|Actinobacteria
Evalue	9.68e-22
EggNOG OGs	COG2304@1\|root,COG2304@2\|Bacteria,2IDJM@201174\|Actinobacteria,4DEGK@85008\|Micromonosporales
Description	von Willebrand factor (vWF) type A domain
COG category	V

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud246	Gcaud246	Gracilaria caudata M_176_S67 male	gene	NODE_1048_length_14702_cov_4.665047 2750..3934 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud246.t1.start1	Gcaud246.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1048_length_14702_cov_4.665047 2750..2752 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud246.t1.CDS1	Gcaud246.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1048_length_14702_cov_4.665047 2750..3934 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud246.t1.exon1	Gcaud246.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1048_length_14702_cov_4.665047 2750..3934 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud246.t1.stop1	Gcaud246.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1048_length_14702_cov_4.665047 3932..3934 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud246.t1	Gcaud246.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1048_length_14702_cov_4.665047 2750..3934 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1048_length_14702_cov_4.665047:2750..3934+
coding sequence from alignment at NODE_1048_length_14702_cov_4.665047:2750..3934+

mRNA sequence

>Gcaud246.t1 ID=Gcaud246.t1|Name=Gcaud246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=395bp
MASRSPSASFAPTAAPSASQVQDSPDPTQTVLASTAPTTTPLLSPTTPTP
DVGSETTSASATPSPVPPVPDVVGLNETVQIPPSTQLSDPITFNVTVEVR
AGSGSTLEDLYLLTDLTTSTTSINSEIRENFAQIVTARSAVSSNVAFGVG
AYTDEGDDPFFENRQPVSTNISAVQQAIEALEIRSTFNSDIPEANLAALY
TVATSDEIGWRTGSRRIVVLFGDAPGHEPSCISSLELRRDNVIAALNNQG
ITVVASSFSPGLNEETTSFGCDADAEPAPTDVGQADAITAGTGGSIVELE
EQTQVIENALASVNSLSQTLEADTSECEAQNVEVSFSPGLPLTISSGSSQ
SVSQSVQITACGDSMGAFTCTVRFNLSGAPVGEQTLSSSGLDAC*

spliced messenger RNA

>Gcaud246.t1 ID=Gcaud246.t1|Name=Gcaud246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1185bp|location=Sequence derived from alignment at NODE_1048_length_14702_cov_4.665047:2750..3934+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGCCGTTCCCCTAGCGCTTCCTTTGCACCGACGGCAGCTCCATC
TGCATCTCAGGTTCAGGACAGTCCGGACCCGACGCAAACTGTACTTGCTT
CCACAGCACCCACAACAACTCCGTTACTGTCTCCTACCACGCCAACGCCA
GACGTTGGCTCCGAGACAACATCAGCTTCTGCGACCCCATCTCCTGTCCC
TCCAGTTCCCGATGTCGTGGGATTGAACGAAACCGTGCAGATTCCGCCAA
GCACGCAGCTCTCAGATCCAATTACGTTCAATGTAACTGTGGAGGTTAGA
GCTGGCTCCGGTTCCACTCTGGAGGATTTGTACCTACTCACTGATCTGAC
TACCTCTACGACAAGCATCAACTCCGAAATCAGAGAGAACTTTGCCCAAA
TTGTGACTGCTCGTTCAGCAGTGTCATCCAATGTTGCTTTCGGTGTCGGT
GCGTACACGGACGAAGGAGATGATCCTTTCTTTGAGAACAGGCAACCGGT
CTCCACCAATATCTCTGCTGTTCAGCAAGCCATTGAGGCTCTGGAGATTC
GATCCACGTTTAATAGTGACATCCCAGAAGCTAATCTTGCTGCATTGTAC
ACCGTCGCAACCTCAGATGAAATTGGATGGAGAACTGGTTCTCGCCGTAT
CGTGGTGCTATTCGGAGACGCGCCAGGCCACGAACCGTCGTGTATATCTT
CGCTTGAGCTTCGCCGCGATAATGTGATTGCCGCTTTGAACAACCAAGGG
ATCACCGTCGTGGCTTCTAGCTTTTCGCCCGGTCTGAATGAAGAAACAAC
TTCGTTTGGTTGCGATGCTGACGCAGAGCCAGCACCTACAGATGTTGGAC
AGGCGGATGCTATTACCGCTGGAACAGGAGGAAGCATCGTGGAGCTAGAA
GAGCAGACGCAAGTGATTGAGAACGCGCTTGCCTCCGTCAACTCGCTCTC
TCAGACACTCGAAGCAGATACTTCGGAGTGCGAGGCTCAAAACGTGGAAG
TGTCTTTCTCTCCAGGTTTGCCGCTCACGATTTCCTCTGGAAGCTCTCAG
TCCGTTTCACAGAGTGTACAGATAACTGCTTGCGGAGATTCGATGGGTGC
GTTTACATGCACCGTGCGTTTCAACCTAAGTGGCGCACCTGTTGGAGAGC
AGACTCTGTCTTCTTCTGGTTTAGACGCGTGCTAG

protein sequence of Gcaud246.t1

>Gcaud246.t1 ID=Gcaud246.t1|Name=Gcaud246.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=395bp
MASRSPSASFAPTAAPSASQVQDSPDPTQTVLASTAPTTTPLLSPTTPTP
DVGSETTSASATPSPVPPVPDVVGLNETVQIPPSTQLSDPITFNVTVEVR
AGSGSTLEDLYLLTDLTTSTTSINSEIRENFAQIVTARSAVSSNVAFGVG
AYTDEGDDPFFENRQPVSTNISAVQQAIEALEIRSTFNSDIPEANLAALY
TVATSDEIGWRTGSRRIVVLFGDAPGHEPSCISSLELRRDNVIAALNNQG
ITVVASSFSPGLNEETTSFGCDADAEPAPTDVGQADAITAGTGGSIVELE
EQTQVIENALASVNSLSQTLEADTSECEAQNVEVSFSPGLPLTISSGSSQ
SVSQSVQITACGDSMGAFTCTVRFNLSGAPVGEQTLSSSGLDAC*

mRNA from alignment at NODE_1048_length_14702_cov_4.665047:2750..3934+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud246.t1 ID=Gcaud246.t1|Name=Gcaud246.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1185bp|location=Sequence derived from alignment at NODE_1048_length_14702_cov_4.665047:2750..3934+ (Gracilaria caudata M_176_S67 male)
ATGGCGAGCCGTTCCCCTAGCGCTTCCTTTGCACCGACGGCAGCTCCATC
TGCATCTCAGGTTCAGGACAGTCCGGACCCGACGCAAACTGTACTTGCTT
CCACAGCACCCACAACAACTCCGTTACTGTCTCCTACCACGCCAACGCCA
GACGTTGGCTCCGAGACAACATCAGCTTCTGCGACCCCATCTCCTGTCCC
TCCAGTTCCCGATGTCGTGGGATTGAACGAAACCGTGCAGATTCCGCCAA
GCACGCAGCTCTCAGATCCAATTACGTTCAATGTAACTGTGGAGGTTAGA
GCTGGCTCCGGTTCCACTCTGGAGGATTTGTACCTACTCACTGATCTGAC
TACCTCTACGACAAGCATCAACTCCGAAATCAGAGAGAACTTTGCCCAAA
TTGTGACTGCTCGTTCAGCAGTGTCATCCAATGTTGCTTTCGGTGTCGGT
GCGTACACGGACGAAGGAGATGATCCTTTCTTTGAGAACAGGCAACCGGT
CTCCACCAATATCTCTGCTGTTCAGCAAGCCATTGAGGCTCTGGAGATTC
GATCCACGTTTAATAGTGACATCCCAGAAGCTAATCTTGCTGCATTGTAC
ACCGTCGCAACCTCAGATGAAATTGGATGGAGAACTGGTTCTCGCCGTAT
CGTGGTGCTATTCGGAGACGCGCCAGGCCACGAACCGTCGTGTATATCTT
CGCTTGAGCTTCGCCGCGATAATGTGATTGCCGCTTTGAACAACCAAGGG
ATCACCGTCGTGGCTTCTAGCTTTTCGCCCGGTCTGAATGAAGAAACAAC
TTCGTTTGGTTGCGATGCTGACGCAGAGCCAGCACCTACAGATGTTGGAC
AGGCGGATGCTATTACCGCTGGAACAGGAGGAAGCATCGTGGAGCTAGAA
GAGCAGACGCAAGTGATTGAGAACGCGCTTGCCTCCGTCAACTCGCTCTC
TCAGACACTCGAAGCAGATACTTCGGAGTGCGAGGCTCAAAACGTGGAAG
TGTCTTTCTCTCCAGGTTTGCCGCTCACGATTTCCTCTGGAAGCTCTCAG
TCCGTTTCACAGAGTGTACAGATAACTGCTTGCGGAGATTCGATGGGTGC
GTTTACATGCACCGTGCGTTTCAACCTAAGTGGCGCACCTGTTGGAGAGC
AGACTCTGTCTTCTTCTGGTTTAGACGCGTGCTAG

Coding sequence (CDS) from alignment at NODE_1048_length_14702_cov_4.665047:2750..3934+

>Gcaud246.t1 ID=Gcaud246.t1|Name=Gcaud246.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1185bp|location=Sequence derived from alignment at NODE_1048_length_14702_cov_4.665047:2750..3934+ (Gracilaria caudata M_176_S67 male)
ATGGCGAGCCGTTCCCCTAGCGCTTCCTTTGCACCGACGGCAGCTCCATC
TGCATCTCAGGTTCAGGACAGTCCGGACCCGACGCAAACTGTACTTGCTT
CCACAGCACCCACAACAACTCCGTTACTGTCTCCTACCACGCCAACGCCA
GACGTTGGCTCCGAGACAACATCAGCTTCTGCGACCCCATCTCCTGTCCC
TCCAGTTCCCGATGTCGTGGGATTGAACGAAACCGTGCAGATTCCGCCAA
GCACGCAGCTCTCAGATCCAATTACGTTCAATGTAACTGTGGAGGTTAGA
GCTGGCTCCGGTTCCACTCTGGAGGATTTGTACCTACTCACTGATCTGAC
TACCTCTACGACAAGCATCAACTCCGAAATCAGAGAGAACTTTGCCCAAA
TTGTGACTGCTCGTTCAGCAGTGTCATCCAATGTTGCTTTCGGTGTCGGT
GCGTACACGGACGAAGGAGATGATCCTTTCTTTGAGAACAGGCAACCGGT
CTCCACCAATATCTCTGCTGTTCAGCAAGCCATTGAGGCTCTGGAGATTC
GATCCACGTTTAATAGTGACATCCCAGAAGCTAATCTTGCTGCATTGTAC
ACCGTCGCAACCTCAGATGAAATTGGATGGAGAACTGGTTCTCGCCGTAT
CGTGGTGCTATTCGGAGACGCGCCAGGCCACGAACCGTCGTGTATATCTT
CGCTTGAGCTTCGCCGCGATAATGTGATTGCCGCTTTGAACAACCAAGGG
ATCACCGTCGTGGCTTCTAGCTTTTCGCCCGGTCTGAATGAAGAAACAAC
TTCGTTTGGTTGCGATGCTGACGCAGAGCCAGCACCTACAGATGTTGGAC
AGGCGGATGCTATTACCGCTGGAACAGGAGGAAGCATCGTGGAGCTAGAA
GAGCAGACGCAAGTGATTGAGAACGCGCTTGCCTCCGTCAACTCGCTCTC
TCAGACACTCGAAGCAGATACTTCGGAGTGCGAGGCTCAAAACGTGGAAG
TGTCTTTCTCTCCAGGTTTGCCGCTCACGATTTCCTCTGGAAGCTCTCAG
TCCGTTTCACAGAGTGTACAGATAACTGCTTGCGGAGATTCGATGGGTGC
GTTTACATGCACCGTGCGTTTCAACCTAAGTGGCGCACCTGTTGGAGAGC
AGACTCTGTCTTCTTCTGGTTTAGACGCGTGCTAG