Gcaud2459.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2459.t1
Unique NameGcaud2459.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_742_length_18867_cov_4.749521contigNODE_742_length_18867_cov_4.749521:15803..17191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705373.1
Preferred nameEIF2S3
PFAMsChromo,GTP_EFTU,GTP_EFTU_D2,Pre-SET,SET,eIF2_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K03242,ko:K11419
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko03013,map00310,map03013
GOsGO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0003924,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005850,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006810,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016282,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0065003,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.39e-259
EggNOG OGsCOG3276@1|root,KOG0466@2759|Eukaryota
EC2.1.1.43
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03012,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2459Gcaud2459Gracilaria caudata M_176_S67 malegeneNODE_742_length_18867_cov_4.749521 15803..17191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2459.t1.stop1Gcaud2459.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_742_length_18867_cov_4.749521 15803..15805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2459.t1.CDS1Gcaud2459.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_742_length_18867_cov_4.749521 15803..17191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2459.t1.exon1Gcaud2459.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_742_length_18867_cov_4.749521 15803..17191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2459.t1.start1Gcaud2459.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_742_length_18867_cov_4.749521 17189..17191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2459.t1Gcaud2459.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_742_length_18867_cov_4.749521 15803..17191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2459.t1 ID=Gcaud2459.t1|Name=Gcaud2459.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=463bp
MADSRGLAVQDLSTLEVSALTPLTPHVISRQATINIGTIGHVAHGKSTVV
KAISGVQTVRFKTEHERNITIKLGYANAKLYKCADETCPRPSCYRAYGSA
KEDSPTCEIPGCNASMQLMRHVSFVDCPGHDILMATMLNGAAVMDAALLL
IAGNEPCPQPQTSEHLAAVEIMKLRNIIILQNKIDLVKGTHAQAQSEQIR
EFTRGTVADGSPIIPISAQLKYNIDVVVEYLIKKVPVPVRNFTSSPRMIV
IRSFDVNKPGEEVDGLKGGVAGGSIMQGVLKVGDAIEVRPGITYRDGNGK
MACSPIMSVIRSMHAEQNDLQYAVPGGLIGVGTKIDPTLTRADRLVGAVL
GARGQLPDVYCELEVNFFLLRRLLGMKTEGDSKQAKVSKLNKGEMLMVNI
GSTSTGGKVLAVKRDLAKFTLSNPVCTSVDEKIALSRRIDKHWRLIGWGR
IRAGSTINLSSS*
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spliced messenger RNA

>Gcaud2459.t1 ID=Gcaud2459.t1|Name=Gcaud2459.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:15803..17191- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACTCGCGCGGACTAGCCGTGCAGGATCTGTCCACACTCGAAGT
CAGCGCGCTCACCCCGCTCACGCCGCACGTCATCTCGCGCCAGGCCACCA
TCAACATCGGCACCATCGGCCATGTGGCGCACGGCAAGTCCACCGTCGTG
AAGGCCATCTCGGGCGTGCAGACCGTGCGCTTCAAGACGGAGCACGAGCG
AAACATCACCATCAAGCTTGGTTACGCCAACGCCAAGCTGTACAAGTGCG
CTGATGAGACGTGTCCCCGCCCGTCTTGTTACCGCGCCTATGGCTCTGCG
AAGGAGGACTCGCCCACCTGCGAGATCCCCGGCTGCAACGCGTCGATGCA
GCTTATGAGACATGTTAGCTTCGTCGATTGCCCTGGCCATGACATCCTTA
TGGCTACCATGCTTAACGGCGCGGCCGTTATGGATGCGGCCCTGCTGCTC
ATTGCTGGGAACGAACCTTGTCCACAGCCGCAGACCAGTGAACATCTGGC
TGCTGTGGAGATCATGAAGTTGAGAAACATCATCATTCTTCAGAACAAGA
TCGATCTTGTAAAGGGCACTCACGCGCAGGCTCAATCAGAACAGATTCGC
GAATTTACGCGAGGTACCGTGGCCGATGGATCACCCATCATCCCCATTTC
GGCGCAGCTCAAATACAACATTGACGTCGTTGTCGAATACCTCATCAAGA
AGGTTCCTGTACCTGTCAGAAATTTCACCAGTTCGCCGAGAATGATCGTC
ATTCGTAGCTTTGATGTCAACAAACCGGGCGAAGAAGTGGATGGCTTGAA
GGGAGGCGTTGCGGGCGGCTCTATTATGCAGGGTGTTCTCAAGGTTGGCG
ACGCCATTGAAGTGCGACCGGGTATCACCTACCGTGACGGAAATGGAAAG
ATGGCCTGCAGTCCTATCATGAGTGTTATTCGTTCTATGCATGCCGAACA
GAATGATCTGCAATATGCTGTGCCAGGTGGGCTTATAGGCGTTGGAACTA
AGATTGATCCTACGCTTACAAGAGCCGATCGCCTTGTTGGTGCTGTGTTG
GGTGCTCGAGGTCAATTGCCGGATGTGTACTGCGAGCTTGAGGTTAACTT
CTTTTTACTGAGGCGTTTGTTAGGTATGAAGACCGAGGGTGATAGCAAGC
AAGCTAAGGTTTCGAAACTGAACAAGGGAGAGATGCTTATGGTTAACATT
GGTAGTACTAGTACTGGCGGAAAAGTTCTCGCCGTTAAGAGAGATTTGGC
CAAGTTCACGCTCTCAAATCCGGTTTGTACCTCGGTTGATGAAAAGATTG
CGTTGTCTAGAAGAATTGACAAGCATTGGCGTCTTATTGGATGGGGTCGT
ATTCGTGCTGGATCTACTATCAATCTGTCCTCATCGTAA
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protein sequence of Gcaud2459.t1

>Gcaud2459.t1 ID=Gcaud2459.t1|Name=Gcaud2459.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=463bp
MADSRGLAVQDLSTLEVSALTPLTPHVISRQATINIGTIGHVAHGKSTVV
KAISGVQTVRFKTEHERNITIKLGYANAKLYKCADETCPRPSCYRAYGSA
KEDSPTCEIPGCNASMQLMRHVSFVDCPGHDILMATMLNGAAVMDAALLL
IAGNEPCPQPQTSEHLAAVEIMKLRNIIILQNKIDLVKGTHAQAQSEQIR
EFTRGTVADGSPIIPISAQLKYNIDVVVEYLIKKVPVPVRNFTSSPRMIV
IRSFDVNKPGEEVDGLKGGVAGGSIMQGVLKVGDAIEVRPGITYRDGNGK
MACSPIMSVIRSMHAEQNDLQYAVPGGLIGVGTKIDPTLTRADRLVGAVL
GARGQLPDVYCELEVNFFLLRRLLGMKTEGDSKQAKVSKLNKGEMLMVNI
GSTSTGGKVLAVKRDLAKFTLSNPVCTSVDEKIALSRRIDKHWRLIGWGR
IRAGSTINLSSS*
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mRNA from alignment at NODE_742_length_18867_cov_4.749521:15803..17191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2459.t1 ID=Gcaud2459.t1|Name=Gcaud2459.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:15803..17191- (Gracilaria caudata M_176_S67 male)
ATGGCCGACTCGCGCGGACTAGCCGTGCAGGATCTGTCCACACTCGAAGT
CAGCGCGCTCACCCCGCTCACGCCGCACGTCATCTCGCGCCAGGCCACCA
TCAACATCGGCACCATCGGCCATGTGGCGCACGGCAAGTCCACCGTCGTG
AAGGCCATCTCGGGCGTGCAGACCGTGCGCTTCAAGACGGAGCACGAGCG
AAACATCACCATCAAGCTTGGTTACGCCAACGCCAAGCTGTACAAGTGCG
CTGATGAGACGTGTCCCCGCCCGTCTTGTTACCGCGCCTATGGCTCTGCG
AAGGAGGACTCGCCCACCTGCGAGATCCCCGGCTGCAACGCGTCGATGCA
GCTTATGAGACATGTTAGCTTCGTCGATTGCCCTGGCCATGACATCCTTA
TGGCTACCATGCTTAACGGCGCGGCCGTTATGGATGCGGCCCTGCTGCTC
ATTGCTGGGAACGAACCTTGTCCACAGCCGCAGACCAGTGAACATCTGGC
TGCTGTGGAGATCATGAAGTTGAGAAACATCATCATTCTTCAGAACAAGA
TCGATCTTGTAAAGGGCACTCACGCGCAGGCTCAATCAGAACAGATTCGC
GAATTTACGCGAGGTACCGTGGCCGATGGATCACCCATCATCCCCATTTC
GGCGCAGCTCAAATACAACATTGACGTCGTTGTCGAATACCTCATCAAGA
AGGTTCCTGTACCTGTCAGAAATTTCACCAGTTCGCCGAGAATGATCGTC
ATTCGTAGCTTTGATGTCAACAAACCGGGCGAAGAAGTGGATGGCTTGAA
GGGAGGCGTTGCGGGCGGCTCTATTATGCAGGGTGTTCTCAAGGTTGGCG
ACGCCATTGAAGTGCGACCGGGTATCACCTACCGTGACGGAAATGGAAAG
ATGGCCTGCAGTCCTATCATGAGTGTTATTCGTTCTATGCATGCCGAACA
GAATGATCTGCAATATGCTGTGCCAGGTGGGCTTATAGGCGTTGGAACTA
AGATTGATCCTACGCTTACAAGAGCCGATCGCCTTGTTGGTGCTGTGTTG
GGTGCTCGAGGTCAATTGCCGGATGTGTACTGCGAGCTTGAGGTTAACTT
CTTTTTACTGAGGCGTTTGTTAGGTATGAAGACCGAGGGTGATAGCAAGC
AAGCTAAGGTTTCGAAACTGAACAAGGGAGAGATGCTTATGGTTAACATT
GGTAGTACTAGTACTGGCGGAAAAGTTCTCGCCGTTAAGAGAGATTTGGC
CAAGTTCACGCTCTCAAATCCGGTTTGTACCTCGGTTGATGAAAAGATTG
CGTTGTCTAGAAGAATTGACAAGCATTGGCGTCTTATTGGATGGGGTCGT
ATTCGTGCTGGATCTACTATCAATCTGTCCTCATCGTAA
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Coding sequence (CDS) from alignment at NODE_742_length_18867_cov_4.749521:15803..17191-

>Gcaud2459.t1 ID=Gcaud2459.t1|Name=Gcaud2459.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1389bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:15803..17191- (Gracilaria caudata M_176_S67 male)
ATGGCCGACTCGCGCGGACTAGCCGTGCAGGATCTGTCCACACTCGAAGT
CAGCGCGCTCACCCCGCTCACGCCGCACGTCATCTCGCGCCAGGCCACCA
TCAACATCGGCACCATCGGCCATGTGGCGCACGGCAAGTCCACCGTCGTG
AAGGCCATCTCGGGCGTGCAGACCGTGCGCTTCAAGACGGAGCACGAGCG
AAACATCACCATCAAGCTTGGTTACGCCAACGCCAAGCTGTACAAGTGCG
CTGATGAGACGTGTCCCCGCCCGTCTTGTTACCGCGCCTATGGCTCTGCG
AAGGAGGACTCGCCCACCTGCGAGATCCCCGGCTGCAACGCGTCGATGCA
GCTTATGAGACATGTTAGCTTCGTCGATTGCCCTGGCCATGACATCCTTA
TGGCTACCATGCTTAACGGCGCGGCCGTTATGGATGCGGCCCTGCTGCTC
ATTGCTGGGAACGAACCTTGTCCACAGCCGCAGACCAGTGAACATCTGGC
TGCTGTGGAGATCATGAAGTTGAGAAACATCATCATTCTTCAGAACAAGA
TCGATCTTGTAAAGGGCACTCACGCGCAGGCTCAATCAGAACAGATTCGC
GAATTTACGCGAGGTACCGTGGCCGATGGATCACCCATCATCCCCATTTC
GGCGCAGCTCAAATACAACATTGACGTCGTTGTCGAATACCTCATCAAGA
AGGTTCCTGTACCTGTCAGAAATTTCACCAGTTCGCCGAGAATGATCGTC
ATTCGTAGCTTTGATGTCAACAAACCGGGCGAAGAAGTGGATGGCTTGAA
GGGAGGCGTTGCGGGCGGCTCTATTATGCAGGGTGTTCTCAAGGTTGGCG
ACGCCATTGAAGTGCGACCGGGTATCACCTACCGTGACGGAAATGGAAAG
ATGGCCTGCAGTCCTATCATGAGTGTTATTCGTTCTATGCATGCCGAACA
GAATGATCTGCAATATGCTGTGCCAGGTGGGCTTATAGGCGTTGGAACTA
AGATTGATCCTACGCTTACAAGAGCCGATCGCCTTGTTGGTGCTGTGTTG
GGTGCTCGAGGTCAATTGCCGGATGTGTACTGCGAGCTTGAGGTTAACTT
CTTTTTACTGAGGCGTTTGTTAGGTATGAAGACCGAGGGTGATAGCAAGC
AAGCTAAGGTTTCGAAACTGAACAAGGGAGAGATGCTTATGGTTAACATT
GGTAGTACTAGTACTGGCGGAAAAGTTCTCGCCGTTAAGAGAGATTTGGC
CAAGTTCACGCTCTCAAATCCGGTTTGTACCTCGGTTGATGAAAAGATTG
CGTTGTCTAGAAGAATTGACAAGCATTGGCGTCTTATTGGATGGGGTCGT
ATTCGTGCTGGATCTACTATCAATCTGTCCTCATCGTAA
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