Gcaud2458.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2458.t1
Unique Name	Gcaud2458.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	373

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_742_length_18867_cov_4.749521	contig	NODE_742_length_18867_cov_4.749521:14600..15718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704688.1
PFAMs	PfkB
Max annot lvl	2759\|Eukaryota
Evalue	4.13e-41
EggNOG OGs	COG0524@1\|root,KOG2855@2759\|Eukaryota
Description	carbohydrate kinase activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2458	Gcaud2458	Gracilaria caudata M_176_S67 male	gene	NODE_742_length_18867_cov_4.749521 14600..15718 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2458.t1.start1	Gcaud2458.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_742_length_18867_cov_4.749521 14600..14602 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2458.t1.CDS1	Gcaud2458.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_742_length_18867_cov_4.749521 14600..15718 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2458.t1.exon1	Gcaud2458.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_742_length_18867_cov_4.749521 14600..15718 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2458.t1.stop1	Gcaud2458.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_742_length_18867_cov_4.749521 15716..15718 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2458.t1	Gcaud2458.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_742_length_18867_cov_4.749521 14600..15718 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_742_length_18867_cov_4.749521:14600..15718+
coding sequence from alignment at NODE_742_length_18867_cov_4.749521:14600..15718+

mRNA sequence

>Gcaud2458.t1 ID=Gcaud2458.t1|Name=Gcaud2458.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=373bp
MTDTKLPTVICCGLSCIDIELHNAHVPLSIESVTTFSHTTFTAGGSAPQT
SRALVSLCVQTAVVTLIGDDPHGKTLRDLLRNADVDVRGIQVSSQTCTSL
AVLPLFVDGRRGCFVTLGANNVASSCNLLPRTIMETLFTKSLKVFHFGYP
HLMPQLQGTALRELFERVREGAPHVLLTLDVNGADTKETPETPVLLPALE
YTAAIHANLDEACVITGLAAPSSSDTLSACLIKPIVEWFIDKGAGIACIT
CGKDGVFIATRGEDDAEHNLSPHLEHGAFVYRGAYKVTDDAAVNASGAGD
AFMAGVVAELSESAGKGGVARLADTGLVSALHRIDSKFCGESADLSRLLS
VAKNRDRILPRESLQPSDFAVE*

spliced messenger RNA

>Gcaud2458.t1 ID=Gcaud2458.t1|Name=Gcaud2458.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:14600..15718+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGACACGAAGCTGCCCACGGTCATTTGCTGCGGTCTTAGCTGCAT
AGACATCGAGTTGCACAATGCCCACGTCCCACTCTCGATAGAATCCGTGA
CCACTTTCTCCCACACCACATTCACTGCAGGCGGTTCAGCGCCGCAGACA
TCGCGCGCTCTCGTCTCGCTTTGCGTGCAAACCGCAGTGGTAACGCTCAT
TGGTGACGACCCTCATGGAAAGACGCTTCGCGACCTTCTTCGCAACGCAG
ACGTCGATGTAAGGGGCATTCAAGTCAGCTCGCAAACCTGCACGAGTCTG
GCAGTTCTTCCTTTGTTCGTAGACGGCAGACGCGGTTGCTTCGTTACGCT
CGGTGCAAATAACGTAGCCTCCTCTTGTAACCTCCTACCACGCACAATCA
TGGAAACCTTATTCACAAAGTCTTTGAAAGTGTTTCATTTCGGGTATCCC
CATCTCATGCCGCAATTGCAAGGAACAGCCTTGCGAGAGCTCTTCGAACG
AGTGCGAGAAGGTGCCCCCCACGTGCTTCTCACGCTTGACGTGAACGGCG
CAGACACAAAGGAGACCCCAGAAACGCCAGTACTGCTCCCAGCCCTTGAA
TACACCGCGGCAATCCACGCAAACCTAGACGAAGCGTGCGTAATCACTGG
TCTTGCTGCACCGTCCAGCAGCGACACCCTATCCGCGTGTCTCATAAAGC
CCATCGTCGAGTGGTTTATAGACAAAGGAGCTGGCATAGCATGCATAACA
TGCGGCAAGGACGGAGTGTTCATTGCAACACGCGGAGAAGACGACGCAGA
GCACAATTTATCGCCGCATCTTGAACACGGGGCATTTGTATACAGGGGTG
CTTACAAAGTGACAGACGATGCAGCGGTAAACGCAAGCGGTGCAGGCGAC
GCATTCATGGCTGGCGTCGTCGCCGAACTCTCTGAATCTGCGGGCAAAGG
AGGTGTAGCGCGTCTTGCAGACACAGGCCTGGTAAGCGCTTTGCACCGCA
TAGATTCCAAGTTCTGTGGAGAGAGCGCGGATTTAAGTCGATTATTATCA
GTGGCGAAGAACAGGGATCGCATTCTTCCCAGAGAAAGTCTCCAACCATC
TGATTTCGCAGTGGAGTAG

protein sequence of Gcaud2458.t1

>Gcaud2458.t1 ID=Gcaud2458.t1|Name=Gcaud2458.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=373bp
MTDTKLPTVICCGLSCIDIELHNAHVPLSIESVTTFSHTTFTAGGSAPQT
SRALVSLCVQTAVVTLIGDDPHGKTLRDLLRNADVDVRGIQVSSQTCTSL
AVLPLFVDGRRGCFVTLGANNVASSCNLLPRTIMETLFTKSLKVFHFGYP
HLMPQLQGTALRELFERVREGAPHVLLTLDVNGADTKETPETPVLLPALE
YTAAIHANLDEACVITGLAAPSSSDTLSACLIKPIVEWFIDKGAGIACIT
CGKDGVFIATRGEDDAEHNLSPHLEHGAFVYRGAYKVTDDAAVNASGAGD
AFMAGVVAELSESAGKGGVARLADTGLVSALHRIDSKFCGESADLSRLLS
VAKNRDRILPRESLQPSDFAVE*

mRNA from alignment at NODE_742_length_18867_cov_4.749521:14600..15718+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2458.t1 ID=Gcaud2458.t1|Name=Gcaud2458.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:14600..15718+ (Gracilaria caudata M_176_S67 male)
ATGACGGACACGAAGCTGCCCACGGTCATTTGCTGCGGTCTTAGCTGCAT
AGACATCGAGTTGCACAATGCCCACGTCCCACTCTCGATAGAATCCGTGA
CCACTTTCTCCCACACCACATTCACTGCAGGCGGTTCAGCGCCGCAGACA
TCGCGCGCTCTCGTCTCGCTTTGCGTGCAAACCGCAGTGGTAACGCTCAT
TGGTGACGACCCTCATGGAAAGACGCTTCGCGACCTTCTTCGCAACGCAG
ACGTCGATGTAAGGGGCATTCAAGTCAGCTCGCAAACCTGCACGAGTCTG
GCAGTTCTTCCTTTGTTCGTAGACGGCAGACGCGGTTGCTTCGTTACGCT
CGGTGCAAATAACGTAGCCTCCTCTTGTAACCTCCTACCACGCACAATCA
TGGAAACCTTATTCACAAAGTCTTTGAAAGTGTTTCATTTCGGGTATCCC
CATCTCATGCCGCAATTGCAAGGAACAGCCTTGCGAGAGCTCTTCGAACG
AGTGCGAGAAGGTGCCCCCCACGTGCTTCTCACGCTTGACGTGAACGGCG
CAGACACAAAGGAGACCCCAGAAACGCCAGTACTGCTCCCAGCCCTTGAA
TACACCGCGGCAATCCACGCAAACCTAGACGAAGCGTGCGTAATCACTGG
TCTTGCTGCACCGTCCAGCAGCGACACCCTATCCGCGTGTCTCATAAAGC
CCATCGTCGAGTGGTTTATAGACAAAGGAGCTGGCATAGCATGCATAACA
TGCGGCAAGGACGGAGTGTTCATTGCAACACGCGGAGAAGACGACGCAGA
GCACAATTTATCGCCGCATCTTGAACACGGGGCATTTGTATACAGGGGTG
CTTACAAAGTGACAGACGATGCAGCGGTAAACGCAAGCGGTGCAGGCGAC
GCATTCATGGCTGGCGTCGTCGCCGAACTCTCTGAATCTGCGGGCAAAGG
AGGTGTAGCGCGTCTTGCAGACACAGGCCTGGTAAGCGCTTTGCACCGCA
TAGATTCCAAGTTCTGTGGAGAGAGCGCGGATTTAAGTCGATTATTATCA
GTGGCGAAGAACAGGGATCGCATTCTTCCCAGAGAAAGTCTCCAACCATC
TGATTTCGCAGTGGAGTAG

Coding sequence (CDS) from alignment at NODE_742_length_18867_cov_4.749521:14600..15718+

>Gcaud2458.t1 ID=Gcaud2458.t1|Name=Gcaud2458.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1119bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:14600..15718+ (Gracilaria caudata M_176_S67 male)
ATGACGGACACGAAGCTGCCCACGGTCATTTGCTGCGGTCTTAGCTGCAT
AGACATCGAGTTGCACAATGCCCACGTCCCACTCTCGATAGAATCCGTGA
CCACTTTCTCCCACACCACATTCACTGCAGGCGGTTCAGCGCCGCAGACA
TCGCGCGCTCTCGTCTCGCTTTGCGTGCAAACCGCAGTGGTAACGCTCAT
TGGTGACGACCCTCATGGAAAGACGCTTCGCGACCTTCTTCGCAACGCAG
ACGTCGATGTAAGGGGCATTCAAGTCAGCTCGCAAACCTGCACGAGTCTG
GCAGTTCTTCCTTTGTTCGTAGACGGCAGACGCGGTTGCTTCGTTACGCT
CGGTGCAAATAACGTAGCCTCCTCTTGTAACCTCCTACCACGCACAATCA
TGGAAACCTTATTCACAAAGTCTTTGAAAGTGTTTCATTTCGGGTATCCC
CATCTCATGCCGCAATTGCAAGGAACAGCCTTGCGAGAGCTCTTCGAACG
AGTGCGAGAAGGTGCCCCCCACGTGCTTCTCACGCTTGACGTGAACGGCG
CAGACACAAAGGAGACCCCAGAAACGCCAGTACTGCTCCCAGCCCTTGAA
TACACCGCGGCAATCCACGCAAACCTAGACGAAGCGTGCGTAATCACTGG
TCTTGCTGCACCGTCCAGCAGCGACACCCTATCCGCGTGTCTCATAAAGC
CCATCGTCGAGTGGTTTATAGACAAAGGAGCTGGCATAGCATGCATAACA
TGCGGCAAGGACGGAGTGTTCATTGCAACACGCGGAGAAGACGACGCAGA
GCACAATTTATCGCCGCATCTTGAACACGGGGCATTTGTATACAGGGGTG
CTTACAAAGTGACAGACGATGCAGCGGTAAACGCAAGCGGTGCAGGCGAC
GCATTCATGGCTGGCGTCGTCGCCGAACTCTCTGAATCTGCGGGCAAAGG
AGGTGTAGCGCGTCTTGCAGACACAGGCCTGGTAAGCGCTTTGCACCGCA
TAGATTCCAAGTTCTGTGGAGAGAGCGCGGATTTAAGTCGATTATTATCA
GTGGCGAAGAACAGGGATCGCATTCTTCCCAGAGAAAGTCTCCAACCATC
TGATTTCGCAGTGGAGTAG