Gcaud2457.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2457.t1
Unique NameGcaud2457.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_742_length_18867_cov_4.749521contigNODE_742_length_18867_cov_4.749521:12380..14176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703857.1
Preferred nameSLC17A9
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K08193,ko:K10398,ko:K12303
KEGG TC2.A.1.14,2.A.1.14.21
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009706,GO:0009941,GO:0009987,GO:0010028,GO:0015075,GO:0015144,GO:0015145,GO:0015229,GO:0015291,GO:0015318,GO:0015711,GO:0015749,GO:0015849,GO:0015882,GO:0016020,GO:0016021,GO:0016108,GO:0016116,GO:0016122,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034219,GO:0034220,GO:0034357,GO:0035461,GO:0042170,GO:0042651,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051119,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051704,GO:0051707,GO:0055035,GO:0055085,GO:0071702,GO:0071704,GO:0090482,GO:0098656,GO:1903825,GO:1905039
Evalue6.29e-190
EggNOG OGsKOG2532@1|root,KOG2532@2759|Eukaryota
Descriptiontransmembrane transport
COG categoryL
BRITEko00000,ko02000,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2457Gcaud2457Gracilaria caudata M_176_S67 malegeneNODE_742_length_18867_cov_4.749521 12380..14176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2457.t1Gcaud2457.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_742_length_18867_cov_4.749521 12380..14176 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2457.t1.stop1Gcaud2457.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_742_length_18867_cov_4.749521 12380..12382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2457.t1.CDS1Gcaud2457.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_742_length_18867_cov_4.749521 12380..12542 -
Gcaud2457.t1.CDS2Gcaud2457.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_742_length_18867_cov_4.749521 12723..13092 -
Gcaud2457.t1.CDS3Gcaud2457.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_742_length_18867_cov_4.749521 13195..14176 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2457.t1.exon1Gcaud2457.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_742_length_18867_cov_4.749521 12380..12542 -
Gcaud2457.t1.exon2Gcaud2457.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_742_length_18867_cov_4.749521 12723..13092 -
Gcaud2457.t1.exon3Gcaud2457.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_742_length_18867_cov_4.749521 13195..14176 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2457.t1.intron1Gcaud2457.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_742_length_18867_cov_4.749521 12543..12722 -
Gcaud2457.t1.intron2Gcaud2457.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_742_length_18867_cov_4.749521 13093..13194 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2457.t1.start1Gcaud2457.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_742_length_18867_cov_4.749521 14174..14176 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2457.t1 ID=Gcaud2457.t1|Name=Gcaud2457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=505bp
MAASVNPKRSTLPLGFLPPIVFPNRNMNNSRARSVLPLHTVRSIRKPLAG
NFVSTMRDTRADVESRADVESNSHVEETRVQSPMFSLVNMPERLRVVILC
FVSFVICNCDRINISVAILPMAKFYGWNQTTVGIIQSAFFWGYVLTQIPG
GYLADKYGGKHVLAAGVIVWSAMTLLTPIAASSNLGLLLLARALLGVGEG
VAMPAMNNIISKWVPEKERARSLSLTYSGMYLGSVIGLWLCPQFIVSFGW
QSVFYIFGALGFFWWFAWQGWTTSTPQLSTTISPEELQYIESGAPGAKKE
VSDVPWRLLLSKKPTWAIIVAHFCATWGYFVLLIWLPTYFNRQLGFDLAA
SSFLSILPWFAMFLSANMGGLIADALRSRGMSLTAVRKTMQSIGFLGPAF
FLALVATTETPSLAVFYMTSALALGSFSQSGVYSNHQDIGPAYSGILLGI
SNTGAAIPGIVGVALTGFILDATGSWRLVFAIAIFFYLLGTVVYNIFGTG
ERVF*
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spliced messenger RNA

>Gcaud2457.t1 ID=Gcaud2457.t1|Name=Gcaud2457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:12380..14176- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTAGCGTGAACCCCAAACGAAGTACGCTTCCCCTCGGCTTCTT
GCCGCCAATTGTCTTTCCCAATCGGAACATGAATAATTCGAGAGCGAGAA
GCGTTCTACCGTTGCATACAGTTCGTTCCATCCGCAAACCACTCGCCGGA
AATTTTGTCTCCACAATGAGAGATACCCGCGCCGATGTGGAATCTCGTGC
CGATGTGGAATCAAATAGCCATGTAGAGGAAACTCGGGTACAGTCTCCAA
TGTTCAGTCTGGTTAATATGCCAGAGCGACTACGGGTCGTTATTCTTTGT
TTCGTGTCGTTCGTGATCTGCAACTGCGATCGGATAAACATCTCCGTAGC
CATTCTCCCCATGGCCAAGTTTTACGGTTGGAACCAGACAACAGTTGGAA
TCATACAATCTGCTTTCTTTTGGGGATATGTTCTAACACAAATTCCCGGA
GGATACTTAGCGGATAAATATGGTGGAAAACATGTTTTGGCCGCTGGTGT
CATCGTGTGGTCGGCGATGACGCTACTCACACCGATTGCAGCATCCTCAA
ATCTTGGTTTGCTGCTGCTTGCAAGGGCTCTGCTTGGTGTCGGCGAGGGG
GTGGCTATGCCGGCGATGAATAACATTATATCAAAATGGGTTCCCGAAAA
AGAGAGAGCGCGCTCGTTATCTTTGACGTACAGCGGCATGTATCTCGGCT
CCGTAATTGGTTTATGGTTGTGCCCACAATTCATTGTTTCCTTTGGATGG
CAGAGCGTGTTCTACATCTTCGGCGCACTTGGTTTCTTCTGGTGGTTTGC
TTGGCAGGGTTGGACGACCAGCACGCCACAGCTCTCTACCACCATATCCC
CCGAAGAACTACAGTATATTGAGTCAGGAGCTCCTGGCGCAAAGAAGGAA
GTGTCCGACGTTCCTTGGCGCCTTCTGCTCAGTAAGAAACCAACGTGGGC
AATCATAGTTGCACATTTCTGCGCAACGTGGGGGTACTTTGTGCTGCTCA
TTTGGCTTCCAACTTACTTCAACCGCCAGCTCGGCTTTGATCTCGCTGCT
TCATCTTTTCTTTCAATTCTACCATGGTTTGCCATGTTTCTTTCGGCGAA
CATGGGTGGCCTTATAGCCGACGCCCTGAGATCAAGGGGGATGTCCTTGA
CGGCAGTCAGAAAGACTATGCAGTCAATCGGATTTCTTGGTCCAGCATTT
TTCCTTGCACTAGTTGCGACCACTGAGACCCCTTCCTTGGCCGTCTTTTA
CATGACTTCTGCGCTGGCATTAGGTTCATTCTCTCAGAGTGGAGTATACT
CTAATCACCAGGATATCGGGCCTGCATACTCTGGAATCTTGCTAGGTATC
AGCAACACAGGTGCTGCCATACCAGGAATTGTTGGTGTAGCTCTCACAGG
TTTCATTCTTGACGCCACCGGTTCCTGGAGGCTTGTATTCGCAATAGCCA
TTTTCTTTTATTTGCTTGGTACAGTGGTCTACAACATATTCGGCACTGGT
GAGCGTGTTTTCTGA
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protein sequence of Gcaud2457.t1

>Gcaud2457.t1 ID=Gcaud2457.t1|Name=Gcaud2457.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=505bp
MAASVNPKRSTLPLGFLPPIVFPNRNMNNSRARSVLPLHTVRSIRKPLAG
NFVSTMRDTRADVESRADVESNSHVEETRVQSPMFSLVNMPERLRVVILC
FVSFVICNCDRINISVAILPMAKFYGWNQTTVGIIQSAFFWGYVLTQIPG
GYLADKYGGKHVLAAGVIVWSAMTLLTPIAASSNLGLLLLARALLGVGEG
VAMPAMNNIISKWVPEKERARSLSLTYSGMYLGSVIGLWLCPQFIVSFGW
QSVFYIFGALGFFWWFAWQGWTTSTPQLSTTISPEELQYIESGAPGAKKE
VSDVPWRLLLSKKPTWAIIVAHFCATWGYFVLLIWLPTYFNRQLGFDLAA
SSFLSILPWFAMFLSANMGGLIADALRSRGMSLTAVRKTMQSIGFLGPAF
FLALVATTETPSLAVFYMTSALALGSFSQSGVYSNHQDIGPAYSGILLGI
SNTGAAIPGIVGVALTGFILDATGSWRLVFAIAIFFYLLGTVVYNIFGTG
ERVF*
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mRNA from alignment at NODE_742_length_18867_cov_4.749521:12380..14176-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2457.t1 ID=Gcaud2457.t1|Name=Gcaud2457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1797bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:12380..14176- (Gracilaria caudata M_176_S67 male)
ATGGCTGCTAGCGTGAACCCCAAACGAAGTACGCTTCCCCTCGGCTTCTT
GCCGCCAATTGTCTTTCCCAATCGGAACATGAATAATTCGAGAGCGAGAA
GCGTTCTACCGTTGCATACAGTTCGTTCCATCCGCAAACCACTCGCCGGA
AATTTTGTCTCCACAATGAGAGATACCCGCGCCGATGTGGAATCTCGTGC
CGATGTGGAATCAAATAGCCATGTAGAGGAAACTCGGGTACAGTCTCCAA
TGTTCAGTCTGGTTAATATGCCAGAGCGACTACGGGTCGTTATTCTTTGT
TTCGTGTCGTTCGTGATCTGCAACTGCGATCGGATAAACATCTCCGTAGC
CATTCTCCCCATGGCCAAGTTTTACGGTTGGAACCAGACAACAGTTGGAA
TCATACAATCTGCTTTCTTTTGGGGATATGTTCTAACACAAATTCCCGGA
GGATACTTAGCGGATAAATATGGTGGAAAACATGTTTTGGCCGCTGGTGT
CATCGTGTGGTCGGCGATGACGCTACTCACACCGATTGCAGCATCCTCAA
ATCTTGGTTTGCTGCTGCTTGCAAGGGCTCTGCTTGGTGTCGGCGAGGGG
GTGGCTATGCCGGCGATGAATAACATTATATCAAAATGGGTTCCCGAAAA
AGAGAGAGCGCGCTCGTTATCTTTGACGTACAGCGGCATGTATCTCGGCT
CCGTAATTGGTTTATGGTTGTGCCCACAATTCATTGTTTCCTTTGGATGG
CAGAGCGTGTTCTACATCTTCGGCGCACTTGGTTTCTTCTGGTGGTTTGC
TTGGCAGGGTTGGACGACCAGCACGCCACAGCTCTCTACCACCATATCCC
CCGAAGAACTACAGTATATTGAGTCAGGAGCTCCTGGCGCAAAGAAGGAA
GTGTCCGACGTTCCTTGGCGCCTTCTGCTCAGTAAGAAACCAACGTGGGC
AATCATAGTTGCACATTTCTGCGCAACGTGGGGTGAGTATTTATGCTTTG
GCATGAGTAGAATAACTAAACTTTTTCTTTTCCATCTTGTTACAGGCTTC
TAACCGATTTCTTGTAATCATATTGCAAAACCAGGGTACTTTGTGCTGCT
CATTTGGCTTCCAACTTACTTCAACCGCCAGCTCGGCTTTGATCTCGCTG
CTTCATCTTTTCTTTCAATTCTACCATGGTTTGCCATGTTTCTTTCGGCG
AACATGGGTGGCCTTATAGCCGACGCCCTGAGATCAAGGGGGATGTCCTT
GACGGCAGTCAGAAAGACTATGCAGTCAATCGGATTTCTTGGTCCAGCAT
TTTTCCTTGCACTAGTTGCGACCACTGAGACCCCTTCCTTGGCCGTCTTT
TACATGACTTCTGCGCTGGCATTAGGTTCATTCTCTCAGAGTGGAGTATA
CTCTAATCACCAGGATATCGGGCCTGCATACTCTGGAATCTTGCTAGGTA
TCAGGTGAGTTCAAAAGTAAGCATTGAACGAGGGAGCAACATGAAAATCT
CGGTTCATGATGTGCAACACATGCAATAAGTGCAATTGTCGCTCCTTAAT
ATTTGATATACGCAATGTTATATGGCCAAACTACTGACAACACACTACAT
TCATCTCTTTCCCTTTTCCCTGGAAAACTTATAGCAACACAGGTGCTGCC
ATACCAGGAATTGTTGGTGTAGCTCTCACAGGTTTCATTCTTGACGCCAC
CGGTTCCTGGAGGCTTGTATTCGCAATAGCCATTTTCTTTTATTTGCTTG
GTACAGTGGTCTACAACATATTCGGCACTGGTGAGCGTGTTTTCTGA
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Coding sequence (CDS) from alignment at NODE_742_length_18867_cov_4.749521:12380..14176-

>Gcaud2457.t1 ID=Gcaud2457.t1|Name=Gcaud2457.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1515bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:12380..14176- (Gracilaria caudata M_176_S67 male)
ATGGCTGCTAGCGTGAACCCCAAACGAAGTACGCTTCCCCTCGGCTTCTT
GCCGCCAATTGTCTTTCCCAATCGGAACATGAATAATTCGAGAGCGAGAA
GCGTTCTACCGTTGCATACAGTTCGTTCCATCCGCAAACCACTCGCCGGA
AATTTTGTCTCCACAATGAGAGATACCCGCGCCGATGTGGAATCTCGTGC
CGATGTGGAATCAAATAGCCATGTAGAGGAAACTCGGGTACAGTCTCCAA
TGTTCAGTCTGGTTAATATGCCAGAGCGACTACGGGTCGTTATTCTTTGT
TTCGTGTCGTTCGTGATCTGCAACTGCGATCGGATAAACATCTCCGTAGC
CATTCTCCCCATGGCCAAGTTTTACGGTTGGAACCAGACAACAGTTGGAA
TCATACAATCTGCTTTCTTTTGGGGATATGTTCTAACACAAATTCCCGGA
GGATACTTAGCGGATAAATATGGTGGAAAACATGTTTTGGCCGCTGGTGT
CATCGTGTGGTCGGCGATGACGCTACTCACACCGATTGCAGCATCCTCAA
ATCTTGGTTTGCTGCTGCTTGCAAGGGCTCTGCTTGGTGTCGGCGAGGGG
GTGGCTATGCCGGCGATGAATAACATTATATCAAAATGGGTTCCCGAAAA
AGAGAGAGCGCGCTCGTTATCTTTGACGTACAGCGGCATGTATCTCGGCT
CCGTAATTGGTTTATGGTTGTGCCCACAATTCATTGTTTCCTTTGGATGG
CAGAGCGTGTTCTACATCTTCGGCGCACTTGGTTTCTTCTGGTGGTTTGC
TTGGCAGGGTTGGACGACCAGCACGCCACAGCTCTCTACCACCATATCCC
CCGAAGAACTACAGTATATTGAGTCAGGAGCTCCTGGCGCAAAGAAGGAA
GTGTCCGACGTTCCTTGGCGCCTTCTGCTCAGTAAGAAACCAACGTGGGC
AATCATAGTTGCACATTTCTGCGCAACGTGGGGGTACTTTGTGCTGCTCA
TTTGGCTTCCAACTTACTTCAACCGCCAGCTCGGCTTTGATCTCGCTGCT
TCATCTTTTCTTTCAATTCTACCATGGTTTGCCATGTTTCTTTCGGCGAA
CATGGGTGGCCTTATAGCCGACGCCCTGAGATCAAGGGGGATGTCCTTGA
CGGCAGTCAGAAAGACTATGCAGTCAATCGGATTTCTTGGTCCAGCATTT
TTCCTTGCACTAGTTGCGACCACTGAGACCCCTTCCTTGGCCGTCTTTTA
CATGACTTCTGCGCTGGCATTAGGTTCATTCTCTCAGAGTGGAGTATACT
CTAATCACCAGGATATCGGGCCTGCATACTCTGGAATCTTGCTAGGTATC
AGCAACACAGGTGCTGCCATACCAGGAATTGTTGGTGTAGCTCTCACAGG
TTTCATTCTTGACGCCACCGGTTCCTGGAGGCTTGTATTCGCAATAGCCA
TTTTCTTTTATTTGCTTGGTACAGTGGTCTACAACATATTCGGCACTGGT
GAGCGTGTTTTCTGA
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