Gcaud2453.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2453.t1
Unique Name	Gcaud2453.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	483

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_742_length_18867_cov_4.749521	contig	NODE_742_length_18867_cov_4.749521:2..1584 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2453	Gcaud2453	Gracilaria caudata M_176_S67 male	gene	NODE_742_length_18867_cov_4.749521 2..1584 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2453.t1	Gcaud2453.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_742_length_18867_cov_4.749521 2..1584 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2453.t1.CDS1	Gcaud2453.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_742_length_18867_cov_4.749521 2..871 +
Gcaud2453.t1.CDS2	Gcaud2453.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_742_length_18867_cov_4.749521 1007..1584 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2453.t1.exon1	Gcaud2453.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_742_length_18867_cov_4.749521 2..871 +
Gcaud2453.t1.exon2	Gcaud2453.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_742_length_18867_cov_4.749521 1007..1584 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2453.t1.intron1	Gcaud2453.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_742_length_18867_cov_4.749521 872..1006 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2453.t1.stop1	Gcaud2453.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_742_length_18867_cov_4.749521 1582..1584 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_742_length_18867_cov_4.749521:2..1584+
coding sequence from alignment at NODE_742_length_18867_cov_4.749521:2..1584+

mRNA sequence

>Gcaud2453.t1 ID=Gcaud2453.t1|Name=Gcaud2453.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp
XVRRTKDLYERAIEVGNITDAMNALGVMLERGEDGVGKDVTQAKELYEHA
IERNNAMAMYNLGTLLERGENGVPRDVLRAKELYERAIEVGKTTLAMCSL
GWLLHRGEEGVPRDLRRAKELYEHAIEVGNNHWAMYNLGLLLQQGGEGVP
KDVKRSKELYERAIKEGNNAMAMCNLGLLLQRGEDGVPKDVRRAKDLFER
AIEVGISVYVMNALAVVLERGEGGMPKDVRLAQKLYERAIEEGRNTDAMY
KLGLLLQQGEDSVPKDVRRAMELYKRAIEEGRNTDAMYMLGDGVPKNGAR
AMKLYERAITEGNNAIAMYSLGLLLQQDEDGVPKDVKRAKDLFERAVEVG
NNVYAMNALAVVFERGEDGVGKDVRRAKELYERAIEEGSNVEAMYNLGTL
LERGDDGVGKDVRRAKELYERAIEEGSNVDAMYKLGTLLERDDDGVPRDV
IRAKELHERAIEVGKNAWAMSGFVVIPTWDRI*

spliced messenger RNA

>Gcaud2453.t1 ID=Gcaud2453.t1|Name=Gcaud2453.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1448bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:2..1584+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGAGACGAACAAAGGACCTGTATGAACGGGCTATCGAAGTCGGCAAT
ATCACGGATGCAATGAATGCTCTAGGAGTGATGTTAGAACGGGGTGAAGA
CGGCGTGGGAAAGGATGTGACGCAAGCGAAGGAGCTGTACGAGCACGCGA
TTGAAAGAAACAACGCTATGGCGATGTATAATTTAGGCACGTTGTTGGAA
CGAGGTGAAAACGGGGTGCCGAGGGATGTACTTCGAGCGAAGGAGTTGTA
CGAACGCGCCATCGAAGTCGGGAAGACCACCTTGGCAATGTGCAGTTTGG
GTTGGTTGCTACATCGAGGTGAAGAGGGCGTGCCAAGGGATTTGAGACGA
GCTAAGGAGCTGTACGAACATgcgatcgaagttgggaacaaccactgggc
aatgtacaacttgggtcttttgttacaacaAGGTGGAGAGGGCGTGCCAA
AGGATGTGAAGAGATCTAAAGAGCTGTACGAAAGAGCGATAAAAGAGGGC
AATAACGCTATGGCAATGTGTAATTTAGGTTTGTTACTACAACGGGGTGA
AGATGGCGTTCCGAAGGATGTGAGACGAGCAAAGGACCTGTTTGAACGGG
CTATCGAAGTTGGAATTAGCGTGTATGTAATGAATGCTCTAGCAGTGGTT
TTGGAACGGGGTGAAGGCGGCATGCCAAAGGATGTGAGACTAGCTCAGAA
GCTGTACGAACGGgcgatcgaagaaggaagaaacactgatgcaatgtaca
agttaggtttgctgttacaacaAGGTGAAGACAGCGTGCCAAAGGATGTG
AGACGAGCTATGGAGCTGTACAAACGTgcaatcgaagaaggaagaaacac
tgatgcaatgtatatgttagGGGATGGCGTGCCGAAGAATGGGGCTCGAG
CTATGAAGTTGTACGAACGCGCGATAACAGAAGGCAATAACGCTATTGCA
ATGTATAGTTTAGGTCTGTTGCTACAACAGGATGAGGATGGTGTGCCGAA
GGATGTGAAACGAGCAAAGGACCTGTTTGAACGGGCTGTCGAAGTCGGAA
ATAACGTGTATGCAATGAATGCTCTAGCAGTTGTGTTCGAACGAGGTGAA
GACGGCGTGGGAAAGGATGTGAGACgagcgaaggagctgtacgaacgggc
gattgaagaaggaagtaacgttgaggcaatgtataatttaggcacgttgt
tggaacgtggtgacgacggcgtgggaaaggatgtgagaagagcgaaggag
ctgtacgaacgggcgattgaagaAGGAAGTAACGTGGACGCAATGTATAA
GTTAGGCACGTTGTTGGAACGTGATGACGACGGCGTGCCGAGAGACGTGA
TTCGAGCCAAGGAGTTGCATGAACGCGCGATCGAAGTGGGGAAGAACGCT
TGGGCAATGTCAGGGTTTGTTGTAATACCTACGTGGGATAGGATTTGA

protein sequence of Gcaud2453.t1

>Gcaud2453.t1 ID=Gcaud2453.t1|Name=Gcaud2453.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=483bp
XVRRTKDLYERAIEVGNITDAMNALGVMLERGEDGVGKDVTQAKELYEHA
IERNNAMAMYNLGTLLERGENGVPRDVLRAKELYERAIEVGKTTLAMCSL
GWLLHRGEEGVPRDLRRAKELYEHAIEVGNNHWAMYNLGLLLQQGGEGVP
KDVKRSKELYERAIKEGNNAMAMCNLGLLLQRGEDGVPKDVRRAKDLFER
AIEVGISVYVMNALAVVLERGEGGMPKDVRLAQKLYERAIEEGRNTDAMY
KLGLLLQQGEDSVPKDVRRAMELYKRAIEEGRNTDAMYMLGDGVPKNGAR
AMKLYERAITEGNNAIAMYSLGLLLQQDEDGVPKDVKRAKDLFERAVEVG
NNVYAMNALAVVFERGEDGVGKDVRRAKELYERAIEEGSNVEAMYNLGTL
LERGDDGVGKDVRRAKELYERAIEEGSNVDAMYKLGTLLERDDDGVPRDV
IRAKELHERAIEVGKNAWAMSGFVVIPTWDRI*

mRNA from alignment at NODE_742_length_18867_cov_4.749521:2..1584+

Legend: polypeptideCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2453.t1 ID=Gcaud2453.t1|Name=Gcaud2453.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1583bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:2..1584+ (Gracilaria caudata M_176_S67 male)
ATGTGAGACGAACAAAGGACCTGTATGAACGGGCTATCGAAGTCGGCAAT
ATCACGGATGCAATGAATGCTCTAGGAGTGATGTTAGAACGGGGTGAAGA
CGGCGTGGGAAAGGATGTGACGCAAGCGAAGGAGCTGTACGAGCACGCGA
TTGAAAGAAACAACGCTATGGCGATGTATAATTTAGGCACGTTGTTGGAA
CGAGGTGAAAACGGGGTGCCGAGGGATGTACTTCGAGCGAAGGAGTTGTA
CGAACGCGCCATCGAAGTCGGGAAGACCACCTTGGCAATGTGCAGTTTGG
GTTGGTTGCTACATCGAGGTGAAGAGGGCGTGCCAAGGGATTTGAGACGA
GCTAAGGAGCTGTACGAACATgcgatcgaagttgggaacaaccactgggc
aatgtacaacttgggtcttttgttacaacaAGGTGGAGAGGGCGTGCCAA
AGGATGTGAAGAGATCTAAAGAGCTGTACGAAAGAGCGATAAAAGAGGGC
AATAACGCTATGGCAATGTGTAATTTAGGTTTGTTACTACAACGGGGTGA
AGATGGCGTTCCGAAGGATGTGAGACGAGCAAAGGACCTGTTTGAACGGG
CTATCGAAGTTGGAATTAGCGTGTATGTAATGAATGCTCTAGCAGTGGTT
TTGGAACGGGGTGAAGGCGGCATGCCAAAGGATGTGAGACTAGCTCAGAA
GCTGTACGAACGGgcgatcgaagaaggaagaaacactgatgcaatgtaca
agttaggtttgctgttacaacaAGGTGAAGACAGCGTGCCAAAGGATGTG
AGACGAGCTATGGAGCTGTACAAACGTgcaatcgaagaaggaagaaacac
tgatgcaatgtatatgttaggttcgttgttacaaGAAGGTGAGGACGGCG
TGCCAAAGAATATAAGAGGAGCTAAGGAGCTGTACGAACGTgcgatcgaa
gttgggaacaaccactgggcaatgtatagcttgggttttttgttacaaca
CGGAGGGGATGGCGTGCCGAAGAATGGGGCTCGAGCTATGAAGTTGTACG
AACGCGCGATAACAGAAGGCAATAACGCTATTGCAATGTATAGTTTAGGT
CTGTTGCTACAACAGGATGAGGATGGTGTGCCGAAGGATGTGAAACGAGC
AAAGGACCTGTTTGAACGGGCTGTCGAAGTCGGAAATAACGTGTATGCAA
TGAATGCTCTAGCAGTTGTGTTCGAACGAGGTGAAGACGGCGTGGGAAAG
GATGTGAGACgagcgaaggagctgtacgaacgggcgattgaagaaggaag
taacgttgaggcaatgtataatttaggcacgttgttggaacgtggtgacg
acggcgtgggaaaggatgtgagaagagcgaaggagctgtacgaacgggcg
attgaagaAGGAAGTAACGTGGACGCAATGTATAAGTTAGGCACGTTGTT
GGAACGTGATGACGACGGCGTGCCGAGAGACGTGATTCGAGCCAAGGAGT
TGCATGAACGCGCGATCGAAGTGGGGAAGAACGCTTGGGCAATGTCAGGG
TTTGTTGTAATACCTACGTGGGATAGGATTTGA

Coding sequence (CDS) from alignment at NODE_742_length_18867_cov_4.749521:2..1584+

>Gcaud2453.t1 ID=Gcaud2453.t1|Name=Gcaud2453.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1448bp|location=Sequence derived from alignment at NODE_742_length_18867_cov_4.749521:2..1584+ (Gracilaria caudata M_176_S67 male)
ATGTGAGACGAACAAAGGACCTGTATGAACGGGCTATCGAAGTCGGCAAT
ATCACGGATGCAATGAATGCTCTAGGAGTGATGTTAGAACGGGGTGAAGA
CGGCGTGGGAAAGGATGTGACGCAAGCGAAGGAGCTGTACGAGCACGCGA
TTGAAAGAAACAACGCTATGGCGATGTATAATTTAGGCACGTTGTTGGAA
CGAGGTGAAAACGGGGTGCCGAGGGATGTACTTCGAGCGAAGGAGTTGTA
CGAACGCGCCATCGAAGTCGGGAAGACCACCTTGGCAATGTGCAGTTTGG
GTTGGTTGCTACATCGAGGTGAAGAGGGCGTGCCAAGGGATTTGAGACGA
GCTAAGGAGCTGTACGAACATgcgatcgaagttgggaacaaccactgggc
aatgtacaacttgggtcttttgttacaacaAGGTGGAGAGGGCGTGCCAA
AGGATGTGAAGAGATCTAAAGAGCTGTACGAAAGAGCGATAAAAGAGGGC
AATAACGCTATGGCAATGTGTAATTTAGGTTTGTTACTACAACGGGGTGA
AGATGGCGTTCCGAAGGATGTGAGACGAGCAAAGGACCTGTTTGAACGGG
CTATCGAAGTTGGAATTAGCGTGTATGTAATGAATGCTCTAGCAGTGGTT
TTGGAACGGGGTGAAGGCGGCATGCCAAAGGATGTGAGACTAGCTCAGAA
GCTGTACGAACGGgcgatcgaagaaggaagaaacactgatgcaatgtaca
agttaggtttgctgttacaacaAGGTGAAGACAGCGTGCCAAAGGATGTG
AGACGAGCTATGGAGCTGTACAAACGTgcaatcgaagaaggaagaaacac
tgatgcaatgtatatgttagGGGATGGCGTGCCGAAGAATGGGGCTCGAG
CTATGAAGTTGTACGAACGCGCGATAACAGAAGGCAATAACGCTATTGCA
ATGTATAGTTTAGGTCTGTTGCTACAACAGGATGAGGATGGTGTGCCGAA
GGATGTGAAACGAGCAAAGGACCTGTTTGAACGGGCTGTCGAAGTCGGAA
ATAACGTGTATGCAATGAATGCTCTAGCAGTTGTGTTCGAACGAGGTGAA
GACGGCGTGGGAAAGGATGTGAGACgagcgaaggagctgtacgaacgggc
gattgaagaaggaagtaacgttgaggcaatgtataatttaggcacgttgt
tggaacgtggtgacgacggcgtgggaaaggatgtgagaagagcgaaggag
ctgtacgaacgggcgattgaagaAGGAAGTAACGTGGACGCAATGTATAA
GTTAGGCACGTTGTTGGAACGTGATGACGACGGCGTGCCGAGAGACGTGA
TTCGAGCCAAGGAGTTGCATGAACGCGCGATCGAAGTGGGGAAGAACGCT
TGGGCAATGTCAGGGTTTGTTGTAATACCTACGTGGGATAGGATTTGA