Gcaud2450.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2450.t1
Unique Name	Gcaud2450.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	371

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_42_length_67898_cov_4.520993	contig	NODE_42_length_67898_cov_4.520993:62400..63512 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706092.1
Preferred name	MAPK7
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04371,ko:K04464,ko:K20536
KEGG Pathway	ko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04138,ko04139,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05206,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04138,map04139,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05206,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG Module	M00687,M00690
GOs	GO:0000003,GO:0000165,GO:0000166,GO:0000302,GO:0000902,GO:0000904,GO:0001558,GO:0001932,GO:0001933,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0007154,GO:0007162,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007567,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008340,GO:0008361,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009791,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010259,GO:0010468,GO:0010470,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010648,GO:0010941,GO:0016043,GO:0016301,GO:0016310,GO:0016604,GO:0016605,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0019933,GO:0019935,GO:0022008,GO:0022407,GO:0022408,GO:0022414,GO:0022603,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030154,GO:0030155,GO:0030182,GO:0030307,GO:0030554,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032989,GO:0032990,GO:0033554,GO:0033673,GO:0034114,GO:0034115,GO:0034405,GO:0034599,GO:0034614,GO:0034616,GO:0035556,GO:0035639,GO:0035690,GO:0036003,GO:0036094,GO:0036211,GO:0040008,GO:0040011,GO:0040014,GO:0040018,GO:0040024,GO:0042221,GO:0042325,GO:0042326,GO:0042330,GO:0042493,GO:0042542,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044706,GO:0045765,GO:0045793,GO:0045859,GO:0045893,GO:0045927,GO:0045935,GO:0045936,GO:0045944,GO:0045995,GO:0046677,GO:0046777,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050727,GO:0050728,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050848,GO:0050849,GO:0050896,GO:0051019,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051336,GO:0051338,GO:0051342,GO:0051344,GO:0051346,GO:0051348,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0060255,GO:0060548,GO:0060759,GO:0060761,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070301,GO:0070375,GO:0070376,GO:0070377,GO:0070587,GO:0070848,GO:0070884,GO:0070885,GO:0070887,GO:0071236,GO:0071310,GO:0071363,GO:0071495,GO:0071498,GO:0071499,GO:0071559,GO:0071560,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0097159,GO:0097237,GO:0097367,GO:0097485,GO:0106056,GO:0106057,GO:0120036,GO:0120039,GO:0140096,GO:1900407,GO:1900408,GO:1901099,GO:1901265,GO:1901342,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902175,GO:1902176,GO:1902531,GO:1902532,GO:1902680,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903506,GO:1903508,GO:1904035,GO:1904036,GO:2000026,GO:2000112,GO:2000351,GO:2000352,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237,GO:2001239,GO:2001240,GO:2001242,GO:2001243
Evalue	3.23e-106
EggNOG OGs	KOG0660@1\|root,KOG0660@2759\|Eukaryota
EC	2.7.11.24
Description	MAP kinase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2450	Gcaud2450	Gracilaria caudata M_176_S67 male	gene	NODE_42_length_67898_cov_4.520993 62400..63512 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2450.t1.stop1	Gcaud2450.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_42_length_67898_cov_4.520993 62400..62402 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2450.t1.CDS1	Gcaud2450.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 62400..63512 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2450.t1.exon1	Gcaud2450.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 62400..63512 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2450.t1.start1	Gcaud2450.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_42_length_67898_cov_4.520993 63510..63512 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2450.t1	Gcaud2450.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_42_length_67898_cov_4.520993 62400..63512 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_42_length_67898_cov_4.520993:62400..63512-
coding sequence from alignment at NODE_42_length_67898_cov_4.520993:62400..63512-

mRNA sequence

>Gcaud2450.t1 ID=Gcaud2450.t1|Name=Gcaud2450.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=371bp
MPAPLRLYYIAGFEFECPQRYTVDRVIGRGAYGMVCAAIDHVRREMVAIK
RINGVTHDVTDCKRTLREMLLLRHFSHEHIVTLKDVYLPTRDPSNFQEVY
FVTDLMEFDLHQLIASNQNISADHTQYLTYQLLNGLKYIHSAGVIHRDLK
PSNILLTQHCQLKICDFGLARDAPRTEATQERMTAYVATRWYRAPEILLG
GRYSAAVDVWSVGCILAEIVLRRPLFPGTTCQEQLLRVAKTIGPPPQSMV
LDLCSPHAQLFVERHLKHFPKRNVRELFPHVPETLRDILALMLEYDPRKR
ITVLQAFQHPYLVALHDEDDEPTCDRTYSGNLDSIPLRDLSHMIWRESEL
YRARREAEDKSTDFDPQSLT*

spliced messenger RNA

>Gcaud2450.t1 ID=Gcaud2450.t1|Name=Gcaud2450.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:62400..63512- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCCCCTCTCAGACTGTACTACATCGCTGGCTTCGAGTTCGAATG
CCCTCAGCGCTATACCGTTGACCGCGTTATCGGCCGCGGTGCATACGGCA
TGGTCTGTGCCGCCATCGACCACGTCCGCAGGGAGATGGTCGCCATAAAG
AGAATCAACGGCGTCACGCACGACGTCACCGACTGCAAGCGCACGCTGCG
TGAGATGCTACTACTCCGTCATTTCAGCCACGAGCACATCGTAACTCTCA
AAGACGTATACCTTCCCACGAGGGATCCATCCAACTTTCAAGAGGTGTAC
TTTGTCACCGACCTCATGGAATTCGACTTGCACCAACTTATAGCTAGCAA
CCAGAACATTAGCGCGGATCATACCCAATATCTCACATACCAACTGCTTA
ACGGACTCAAATATATTCACTCCGCCGGCGTAATTCACCGTGACCTCAAA
CCCTCCAATATTTTGTTAACCCAACACTGTCAGCTCAAAATCTGCGACTT
CGGTTTAGCTCGAGATGCTCCACGTACCGAAGCCACCCAAGAACGGATGA
CTGCCTACGTTGCTACACGCTGGTATCGTGCACCGGAAATTTTACTCGGT
GGTCGATACTCAGCAGCTGTCGATGTGTGGAGCGTCGGCTGTATCCTTGC
TGAAATTGTGTTGCGACGACCACTATTCCCCGGAACTACTTGCCAGGAAC
AGTTGCTCAGAGTGGCAAAGACAATAGGCCCACCGCCGCAAAGCATGGTG
CTTGATTTATGTTCCCCGCACGCTCAATTGTTCGTCGAGAGACACTTGAA
GCACTTCCCAAAGCGAAATGTGCGGGAGTTGTTCCCACATGTCCCCGAAA
CTTTACGTGACATATTAGCCCTGATGTTGGAATACGATCCGCGTAAGCGA
ATTACCGTACTGCAAGCGTTTCAGCACCCGTACCTAGTTGCATTGCATGA
CGAAGATGATGAACCGACATGTGACAGAACGTATAGCGGTAATCTGGACA
GTATTCCATTGCGTGATTTGTCGCATATGATTTGGCGAGAATCCGAATTG
TACAGGGCTCGAAGAGAAGCAGAAGATAAGTCCACAGACTTCGACCCCCA
ATCTCTGACATGA

protein sequence of Gcaud2450.t1

>Gcaud2450.t1 ID=Gcaud2450.t1|Name=Gcaud2450.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=371bp
MPAPLRLYYIAGFEFECPQRYTVDRVIGRGAYGMVCAAIDHVRREMVAIK
RINGVTHDVTDCKRTLREMLLLRHFSHEHIVTLKDVYLPTRDPSNFQEVY
FVTDLMEFDLHQLIASNQNISADHTQYLTYQLLNGLKYIHSAGVIHRDLK
PSNILLTQHCQLKICDFGLARDAPRTEATQERMTAYVATRWYRAPEILLG
GRYSAAVDVWSVGCILAEIVLRRPLFPGTTCQEQLLRVAKTIGPPPQSMV
LDLCSPHAQLFVERHLKHFPKRNVRELFPHVPETLRDILALMLEYDPRKR
ITVLQAFQHPYLVALHDEDDEPTCDRTYSGNLDSIPLRDLSHMIWRESEL
YRARREAEDKSTDFDPQSLT*

mRNA from alignment at NODE_42_length_67898_cov_4.520993:62400..63512-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2450.t1 ID=Gcaud2450.t1|Name=Gcaud2450.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:62400..63512- (Gracilaria caudata M_176_S67 male)
ATGCCTGCCCCTCTCAGACTGTACTACATCGCTGGCTTCGAGTTCGAATG
CCCTCAGCGCTATACCGTTGACCGCGTTATCGGCCGCGGTGCATACGGCA
TGGTCTGTGCCGCCATCGACCACGTCCGCAGGGAGATGGTCGCCATAAAG
AGAATCAACGGCGTCACGCACGACGTCACCGACTGCAAGCGCACGCTGCG
TGAGATGCTACTACTCCGTCATTTCAGCCACGAGCACATCGTAACTCTCA
AAGACGTATACCTTCCCACGAGGGATCCATCCAACTTTCAAGAGGTGTAC
TTTGTCACCGACCTCATGGAATTCGACTTGCACCAACTTATAGCTAGCAA
CCAGAACATTAGCGCGGATCATACCCAATATCTCACATACCAACTGCTTA
ACGGACTCAAATATATTCACTCCGCCGGCGTAATTCACCGTGACCTCAAA
CCCTCCAATATTTTGTTAACCCAACACTGTCAGCTCAAAATCTGCGACTT
CGGTTTAGCTCGAGATGCTCCACGTACCGAAGCCACCCAAGAACGGATGA
CTGCCTACGTTGCTACACGCTGGTATCGTGCACCGGAAATTTTACTCGGT
GGTCGATACTCAGCAGCTGTCGATGTGTGGAGCGTCGGCTGTATCCTTGC
TGAAATTGTGTTGCGACGACCACTATTCCCCGGAACTACTTGCCAGGAAC
AGTTGCTCAGAGTGGCAAAGACAATAGGCCCACCGCCGCAAAGCATGGTG
CTTGATTTATGTTCCCCGCACGCTCAATTGTTCGTCGAGAGACACTTGAA
GCACTTCCCAAAGCGAAATGTGCGGGAGTTGTTCCCACATGTCCCCGAAA
CTTTACGTGACATATTAGCCCTGATGTTGGAATACGATCCGCGTAAGCGA
ATTACCGTACTGCAAGCGTTTCAGCACCCGTACCTAGTTGCATTGCATGA
CGAAGATGATGAACCGACATGTGACAGAACGTATAGCGGTAATCTGGACA
GTATTCCATTGCGTGATTTGTCGCATATGATTTGGCGAGAATCCGAATTG
TACAGGGCTCGAAGAGAAGCAGAAGATAAGTCCACAGACTTCGACCCCCA
ATCTCTGACATGA

Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:62400..63512-

>Gcaud2450.t1 ID=Gcaud2450.t1|Name=Gcaud2450.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1113bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:62400..63512- (Gracilaria caudata M_176_S67 male)
ATGCCTGCCCCTCTCAGACTGTACTACATCGCTGGCTTCGAGTTCGAATG
CCCTCAGCGCTATACCGTTGACCGCGTTATCGGCCGCGGTGCATACGGCA
TGGTCTGTGCCGCCATCGACCACGTCCGCAGGGAGATGGTCGCCATAAAG
AGAATCAACGGCGTCACGCACGACGTCACCGACTGCAAGCGCACGCTGCG
TGAGATGCTACTACTCCGTCATTTCAGCCACGAGCACATCGTAACTCTCA
AAGACGTATACCTTCCCACGAGGGATCCATCCAACTTTCAAGAGGTGTAC
TTTGTCACCGACCTCATGGAATTCGACTTGCACCAACTTATAGCTAGCAA
CCAGAACATTAGCGCGGATCATACCCAATATCTCACATACCAACTGCTTA
ACGGACTCAAATATATTCACTCCGCCGGCGTAATTCACCGTGACCTCAAA
CCCTCCAATATTTTGTTAACCCAACACTGTCAGCTCAAAATCTGCGACTT
CGGTTTAGCTCGAGATGCTCCACGTACCGAAGCCACCCAAGAACGGATGA
CTGCCTACGTTGCTACACGCTGGTATCGTGCACCGGAAATTTTACTCGGT
GGTCGATACTCAGCAGCTGTCGATGTGTGGAGCGTCGGCTGTATCCTTGC
TGAAATTGTGTTGCGACGACCACTATTCCCCGGAACTACTTGCCAGGAAC
AGTTGCTCAGAGTGGCAAAGACAATAGGCCCACCGCCGCAAAGCATGGTG
CTTGATTTATGTTCCCCGCACGCTCAATTGTTCGTCGAGAGACACTTGAA
GCACTTCCCAAAGCGAAATGTGCGGGAGTTGTTCCCACATGTCCCCGAAA
CTTTACGTGACATATTAGCCCTGATGTTGGAATACGATCCGCGTAAGCGA
ATTACCGTACTGCAAGCGTTTCAGCACCCGTACCTAGTTGCATTGCATGA
CGAAGATGATGAACCGACATGTGACAGAACGTATAGCGGTAATCTGGACA
GTATTCCATTGCGTGATTTGTCGCATATGATTTGGCGAGAATCCGAATTG
TACAGGGCTCGAAGAGAAGCAGAAGATAAGTCCACAGACTTCGACCCCCA
ATCTCTGACATGA