Gcaud2449.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2449.t1
Unique Name	Gcaud2449.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_42_length_67898_cov_4.520993	contig	NODE_42_length_67898_cov_4.520993:58396..59898 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36331.EPrPI00000016626
PFAMs	PA,zf-RING_2
Max annot lvl	121069\|Pythiales
Evalue	9.49e-14
EggNOG OGs	KOG4628@1\|root,KOG4628@2759\|Eukaryota,1MENE@121069\|Pythiales
Description	Source PGD
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2449	Gcaud2449	Gracilaria caudata M_176_S67 male	gene	NODE_42_length_67898_cov_4.520993 58396..59898 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2449.t1.stop1	Gcaud2449.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_42_length_67898_cov_4.520993 58396..58398 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2449.t1.CDS1	Gcaud2449.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 58396..59898 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2449.t1.exon1	Gcaud2449.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 58396..59898 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2449.t1.start1	Gcaud2449.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_42_length_67898_cov_4.520993 59896..59898 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2449.t1	Gcaud2449.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_42_length_67898_cov_4.520993 58396..59898 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_42_length_67898_cov_4.520993:58396..59898-
coding sequence from alignment at NODE_42_length_67898_cov_4.520993:58396..59898-

mRNA sequence

>Gcaud2449.t1 ID=Gcaud2449.t1|Name=Gcaud2449.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MLLLLLILPVATAVIITAPEACGGSRVVKHSTAFFGPSADASAVANCNVP
LFPPRAQRDGVYVRLMSRLGRKHVHTLRSAAKSLFVGMVFGRAPDSVPLS
DAPPQIPLLEAAAISVRARTTSDAWKNDPKAPLPTVGPTKSPVPSSHLRQ
IAHSAPSYQFIASAPREHIHAQESPSAELSAFALFDACCQLSVPADLQAV
KGTIAVVARGVCDFAQKVRHMQDAGALGVIVVNFKDEGDHLANMKLNQTK
TNPEINIPAVMIRYRDWARIAPCWNETNVIFTSEGEAKGDYGHDALNWAM
MRGMALWILCQCGVNVVRYKRRVSEYRARADAIAALPVETYHRNDHSQPS
ATQDESTPLLTETSEPETPPIPPIANKPVTSPAPSSSVMDHRAERVSLVH
SESQAGPSSPPPLVSAPSSSSTAPLEEAESEQEEPICAVCLEEFESGQQV
RLLACSHLYHRSCIDPWLQSSSNSCPLCKREIPNLPPPPTQLHYGSMHIS
*

spliced messenger RNA

>Gcaud2449.t1 ID=Gcaud2449.t1|Name=Gcaud2449.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:58396..59898- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTGCTGCTGCTCATCTTGCCGGTTGCCACCGCCGTCATCATCAC
CGCGCCCGAGGCGTGTGGGGGCTCGCGAGTCGTCAAGCATTCCACCGCCT
TCTTCGGACCCTCTGCCGATGCTTCTGCTGTCGCCAACTGCAACGTACCT
TTGTTTCCGCCTCGCGCGCAGCGCGATGGCGTGTATGTGCGCCTGATGTC
GCGTCTCGGACGCAAACATGTTCATACATTGCGTTCAGCAGCCAAGTCGT
TGTTTGTGGGCATGGTGTTCGGTCGCGCTCCTGATTCCGTACCACTTTCC
GACGCGCCGCCGCAGATTCCCTTGCTTGAGGCCGCTGCCATTTCCGTTCG
AGCACGCACCACAAGCGATGCCTGGAAGAACGACCCGAAAGCACCTTTAC
CTACCGTTGGTCCCACTAAATCGCCTGTGCCCTCTTCTCATCTACGCCAA
ATAGCACACAGTGCTCCGTCTTATCAGTTTATTGCGTCTGCACCACGAGA
ACACATCCATGCACAAGAATCACCCTCAGCTGAACTTTCTGCGTTTGCTT
TGTTTGATGCGTGTTGCCAGCTTTCGGTGCCCGCTGATCTACAGGCTGTC
AAGGGCACAATCGCCGTTGTAGCTCGCGGAGTATGCGACTTTGCGCAGAA
AGTGCGTCACATGCAGGATGCGGGAGCACTCGGCGTGATCGTCGTCAACT
TCAAGGATGAAGGTGATCATCTTGCCAACATGAAACTCAACCAGACTAAG
ACCAATCCTGAAATTAATATCCCTGCTGTCATGATACGCTATCGCGACTG
GGCTAGAATCGCCCCATGTTGGAACGAAACCAACGTTATTTTTACTTCGG
AAGGGGAAGCTAAAGGCGACTACGGACACGATGCGCTCAACTGGGCGATG
ATGAGGGGAATGGCCTTGTGGATTTTGTGTCAATGCGGCGTTAACGTTGT
GCGATATAAACGCCGTGTTTCTGAATATCGCGCTCGTGCGGATGCGATAG
CGGCTTTGCCCGTCGAAACGTATCACCGGAATGACCATAGTCAGCCGTCT
GCCACACAAGACGAAAGCACACCATTACTTACAGAGACCTCTGAACCCGA
GACGCCACCAATACCACCTATTGCTAACAAACCTGTTACTTCACCTGCCC
CATCTTCATCTGTCATGGATCATCGTGCAGAGCGAGTTAGTCTTGTGCAT
TCCGAGTCACAAGCCGGTCCCTCGTCCCCTCCGCCTCTAGTATCTGCTCC
GTCCTCTTCGTCAACCGCACCTCTGGAAGAAGCGGAAAGTGAACAAGAAG
AACCGATATGTGCCGTTTGTCTCGAAGAGTTCGAATCTGGACAACAAGTG
CGCTTACTGGCTTGCTCGCACCTATACCATAGGTCCTGTATCGACCCATG
GCTTCAGTCGAGTTCAAACAGCTGTCCACTGTGCAAGAGAGAAATTCCAA
ACTTACCACCCCCTCCCACCCAGCTACACTATGGATCAATGCACATATCT
TAA

protein sequence of Gcaud2449.t1

>Gcaud2449.t1 ID=Gcaud2449.t1|Name=Gcaud2449.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MLLLLLILPVATAVIITAPEACGGSRVVKHSTAFFGPSADASAVANCNVP
LFPPRAQRDGVYVRLMSRLGRKHVHTLRSAAKSLFVGMVFGRAPDSVPLS
DAPPQIPLLEAAAISVRARTTSDAWKNDPKAPLPTVGPTKSPVPSSHLRQ
IAHSAPSYQFIASAPREHIHAQESPSAELSAFALFDACCQLSVPADLQAV
KGTIAVVARGVCDFAQKVRHMQDAGALGVIVVNFKDEGDHLANMKLNQTK
TNPEINIPAVMIRYRDWARIAPCWNETNVIFTSEGEAKGDYGHDALNWAM
MRGMALWILCQCGVNVVRYKRRVSEYRARADAIAALPVETYHRNDHSQPS
ATQDESTPLLTETSEPETPPIPPIANKPVTSPAPSSSVMDHRAERVSLVH
SESQAGPSSPPPLVSAPSSSSTAPLEEAESEQEEPICAVCLEEFESGQQV
RLLACSHLYHRSCIDPWLQSSSNSCPLCKREIPNLPPPPTQLHYGSMHIS
*

mRNA from alignment at NODE_42_length_67898_cov_4.520993:58396..59898-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2449.t1 ID=Gcaud2449.t1|Name=Gcaud2449.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:58396..59898- (Gracilaria caudata M_176_S67 male)
ATGCTTCTGCTGCTGCTCATCTTGCCGGTTGCCACCGCCGTCATCATCAC
CGCGCCCGAGGCGTGTGGGGGCTCGCGAGTCGTCAAGCATTCCACCGCCT
TCTTCGGACCCTCTGCCGATGCTTCTGCTGTCGCCAACTGCAACGTACCT
TTGTTTCCGCCTCGCGCGCAGCGCGATGGCGTGTATGTGCGCCTGATGTC
GCGTCTCGGACGCAAACATGTTCATACATTGCGTTCAGCAGCCAAGTCGT
TGTTTGTGGGCATGGTGTTCGGTCGCGCTCCTGATTCCGTACCACTTTCC
GACGCGCCGCCGCAGATTCCCTTGCTTGAGGCCGCTGCCATTTCCGTTCG
AGCACGCACCACAAGCGATGCCTGGAAGAACGACCCGAAAGCACCTTTAC
CTACCGTTGGTCCCACTAAATCGCCTGTGCCCTCTTCTCATCTACGCCAA
ATAGCACACAGTGCTCCGTCTTATCAGTTTATTGCGTCTGCACCACGAGA
ACACATCCATGCACAAGAATCACCCTCAGCTGAACTTTCTGCGTTTGCTT
TGTTTGATGCGTGTTGCCAGCTTTCGGTGCCCGCTGATCTACAGGCTGTC
AAGGGCACAATCGCCGTTGTAGCTCGCGGAGTATGCGACTTTGCGCAGAA
AGTGCGTCACATGCAGGATGCGGGAGCACTCGGCGTGATCGTCGTCAACT
TCAAGGATGAAGGTGATCATCTTGCCAACATGAAACTCAACCAGACTAAG
ACCAATCCTGAAATTAATATCCCTGCTGTCATGATACGCTATCGCGACTG
GGCTAGAATCGCCCCATGTTGGAACGAAACCAACGTTATTTTTACTTCGG
AAGGGGAAGCTAAAGGCGACTACGGACACGATGCGCTCAACTGGGCGATG
ATGAGGGGAATGGCCTTGTGGATTTTGTGTCAATGCGGCGTTAACGTTGT
GCGATATAAACGCCGTGTTTCTGAATATCGCGCTCGTGCGGATGCGATAG
CGGCTTTGCCCGTCGAAACGTATCACCGGAATGACCATAGTCAGCCGTCT
GCCACACAAGACGAAAGCACACCATTACTTACAGAGACCTCTGAACCCGA
GACGCCACCAATACCACCTATTGCTAACAAACCTGTTACTTCACCTGCCC
CATCTTCATCTGTCATGGATCATCGTGCAGAGCGAGTTAGTCTTGTGCAT
TCCGAGTCACAAGCCGGTCCCTCGTCCCCTCCGCCTCTAGTATCTGCTCC
GTCCTCTTCGTCAACCGCACCTCTGGAAGAAGCGGAAAGTGAACAAGAAG
AACCGATATGTGCCGTTTGTCTCGAAGAGTTCGAATCTGGACAACAAGTG
CGCTTACTGGCTTGCTCGCACCTATACCATAGGTCCTGTATCGACCCATG
GCTTCAGTCGAGTTCAAACAGCTGTCCACTGTGCAAGAGAGAAATTCCAA
ACTTACCACCCCCTCCCACCCAGCTACACTATGGATCAATGCACATATCT
TAA

Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:58396..59898-

>Gcaud2449.t1 ID=Gcaud2449.t1|Name=Gcaud2449.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:58396..59898- (Gracilaria caudata M_176_S67 male)
ATGCTTCTGCTGCTGCTCATCTTGCCGGTTGCCACCGCCGTCATCATCAC
CGCGCCCGAGGCGTGTGGGGGCTCGCGAGTCGTCAAGCATTCCACCGCCT
TCTTCGGACCCTCTGCCGATGCTTCTGCTGTCGCCAACTGCAACGTACCT
TTGTTTCCGCCTCGCGCGCAGCGCGATGGCGTGTATGTGCGCCTGATGTC
GCGTCTCGGACGCAAACATGTTCATACATTGCGTTCAGCAGCCAAGTCGT
TGTTTGTGGGCATGGTGTTCGGTCGCGCTCCTGATTCCGTACCACTTTCC
GACGCGCCGCCGCAGATTCCCTTGCTTGAGGCCGCTGCCATTTCCGTTCG
AGCACGCACCACAAGCGATGCCTGGAAGAACGACCCGAAAGCACCTTTAC
CTACCGTTGGTCCCACTAAATCGCCTGTGCCCTCTTCTCATCTACGCCAA
ATAGCACACAGTGCTCCGTCTTATCAGTTTATTGCGTCTGCACCACGAGA
ACACATCCATGCACAAGAATCACCCTCAGCTGAACTTTCTGCGTTTGCTT
TGTTTGATGCGTGTTGCCAGCTTTCGGTGCCCGCTGATCTACAGGCTGTC
AAGGGCACAATCGCCGTTGTAGCTCGCGGAGTATGCGACTTTGCGCAGAA
AGTGCGTCACATGCAGGATGCGGGAGCACTCGGCGTGATCGTCGTCAACT
TCAAGGATGAAGGTGATCATCTTGCCAACATGAAACTCAACCAGACTAAG
ACCAATCCTGAAATTAATATCCCTGCTGTCATGATACGCTATCGCGACTG
GGCTAGAATCGCCCCATGTTGGAACGAAACCAACGTTATTTTTACTTCGG
AAGGGGAAGCTAAAGGCGACTACGGACACGATGCGCTCAACTGGGCGATG
ATGAGGGGAATGGCCTTGTGGATTTTGTGTCAATGCGGCGTTAACGTTGT
GCGATATAAACGCCGTGTTTCTGAATATCGCGCTCGTGCGGATGCGATAG
CGGCTTTGCCCGTCGAAACGTATCACCGGAATGACCATAGTCAGCCGTCT
GCCACACAAGACGAAAGCACACCATTACTTACAGAGACCTCTGAACCCGA
GACGCCACCAATACCACCTATTGCTAACAAACCTGTTACTTCACCTGCCC
CATCTTCATCTGTCATGGATCATCGTGCAGAGCGAGTTAGTCTTGTGCAT
TCCGAGTCACAAGCCGGTCCCTCGTCCCCTCCGCCTCTAGTATCTGCTCC
GTCCTCTTCGTCAACCGCACCTCTGGAAGAAGCGGAAAGTGAACAAGAAG
AACCGATATGTGCCGTTTGTCTCGAAGAGTTCGAATCTGGACAACAAGTG
CGCTTACTGGCTTGCTCGCACCTATACCATAGGTCCTGTATCGACCCATG
GCTTCAGTCGAGTTCAAACAGCTGTCCACTGTGCAAGAGAGAAATTCCAA
ACTTACCACCCCCTCCCACCCAGCTACACTATGGATCAATGCACATATCT
TAA