Gcaud2447.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2447.t1
Unique Name	Gcaud2447.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	755

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_42_length_67898_cov_4.520993	contig	NODE_42_length_67898_cov_4.520993:51496..53865 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX39199
PFAMs	Gly_transf_sug
Max annot lvl	2759\|Eukaryota
Evalue	1.06e-176
EggNOG OGs	2E5VT@1\|root,2SCMT@2759\|Eukaryota
Description	Glycosyltransferase sugar-binding region containing DXD motif
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2447	Gcaud2447	Gracilaria caudata M_176_S67 male	gene	NODE_42_length_67898_cov_4.520993 51496..53865 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2447.t1	Gcaud2447.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_42_length_67898_cov_4.520993 51496..53865 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2447.t1.stop1	Gcaud2447.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_42_length_67898_cov_4.520993 51496..51498 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2447.t1.CDS1	Gcaud2447.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 51496..52954 -
Gcaud2447.t1.CDS2	Gcaud2447.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 53060..53865 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2447.t1.exon1	Gcaud2447.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 51496..52954 -
Gcaud2447.t1.exon2	Gcaud2447.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 53060..53865 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2447.t1.intron1	Gcaud2447.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_42_length_67898_cov_4.520993 52955..53059 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2447.t1.start1	Gcaud2447.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_42_length_67898_cov_4.520993 53863..53865 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_42_length_67898_cov_4.520993:51496..53865-
coding sequence from alignment at NODE_42_length_67898_cov_4.520993:51496..53865-

mRNA sequence

>Gcaud2447.t1 ID=Gcaud2447.t1|Name=Gcaud2447.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=755bp
MGSAEQFSLTIDDLLLVDVNRFDIWDRRESAVGNGHVWKAACEDYKSSPD
FKSGIPLKMHQIWIGSRQPPCVWLDTWRIDFMNKFATSGSNQGHWQYVLW
DNEKVRDVPMLNRHIFDNESAPQCQADILRLEVLYQYGGVYIDADIVSTQ
RDLRPALDSAKETGFLITYEPDTKDKPYSVLGNSLIACTPKHPLILMLMS
YIKQIYGFKRAHYGVEWVTGPLTYTKVLTHPDMPVTIPPSKDFYPAFHYI
PNPSAIDVTSFDSYCFQFGYTCSGLSQWVAANNKCRKAHQCSYHANIEYP
LGKLKQFPSHGSPTPEDAVIPKVLHQFSFQSDHQRPKRWSATWEEKFCPV
TNFKYELWTWDRLKDEIGLFYCANLYRKEHMDNDSLRMLAMEVVEKYGGY
YVPLSTVFMGDESEPEIVEKVFGVGNGGFYENGSVFGASPNTCTSKILEW
YDKGSAEPSKGSLPSSLVADMGIGDDKAAFATFKDGSRFLGASRIYYASW
RQDQKCSSSASAAMVWAYDCQVPIFSLCSEKDTVSSVNESDGRVIVITDS
LFGAFSSLINELPGVMYRFDQDGTDWDFIIFSMEWEADSDGFEVYSASCP
FRSPTARYLGFVANAHTTKDISSIKVDDILAEFHSGKVFVASEKSRHTAK
LASIFRTMPSIENACQTLAGFHPSFSRDHDEVHDNLLKGFRNGQVAFELQ
VDSEQRVMYRSWGHSGAVDCECKIQPGMNGLSVEWLRRYVDGHLVYETVG
EFLR*

spliced messenger RNA

>Gcaud2447.t1 ID=Gcaud2447.t1|Name=Gcaud2447.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2265bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:51496..53865- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCCGCTGAACAGTTTTCCCTCACGATTGACGACCTTCTCTTAGT
CGACGTGAATAGGTTTGACATTTGGGACAGGCGAGAATCAGCTGTTGGCA
ATGGTCACGTATGGAAGGCAGCCTGCGAAGACTACAAGTCATCGCCGGAT
TTCAAGTCAGGAATTCCTCTCAAGATGCATCAGATATGGATTGGCTCCAG
ACAGCCTCCGTGTGTCTGGCTAGATACCTGGAGAATAGATTTCATGAACA
AGTTCGCCACTTCCGGGTCCAACCAAGGGCACTGGCAGTATGTTCTCTGG
GATAATGAAAAGGTTCGAGATGTGCCAATGCTCAATAGGCACATTTTTGA
CAATGAAAGCGCTCCACAATGCCAGGCAGACATTTTACGTTTGGAAGTTT
TGTATCAGTACGGAGGCGTTTATATCGATGCCGATATCGTGTCAACTCAA
CGAGATCTAAGACCAGCATTGGATTCTGCAAAGGAAACTGGTTTTCTTAT
CACCTACGAACCGGATACGAAGGACAAGCCGTATTCCGTTCTTGGAAACA
GTCTCATCGCATGTACTCCGAAACATCCACTCATTCTTATGCTCATGTCG
TACATCAAACAGATATACGGCTTCAAGAGGGCTCACTATGGTGTGGAATG
GGTCACGGGACCGCTCACCTACACGAAGGTCCTTACTCATCCGGATATGC
CTGTCACTATCCCACCCTCAAAAGACTTCTATCCAGCGTTTCACTACATT
CCTAATCCCTCCGCAATTGATGTCACTTCGTTTGACAGTTATTGCTTTCA
ATTCGGGTATACTTGCTCAGGACTCTCGCAATGGGTGGCGGCGAATAACA
AGTGTCGAAAGGCACACCAGTGCAGCTACCATGCCAATATCGAATATCCT
CTGGGTAAGCTAAAGCAATTCCCCTCCCATGGTTCTCCTACTCCAGAGGA
CGCGGTAATTCCGAAAGTACTTCACCAGTTTTCCTTCCAGTCTGATCACC
AACGACCGAAACGTTGGTCCGCCACTTGGGAAGAGAAATTTTGTCCTGTG
ACGAACTTCAAATACGAACTCTGGACATGGGATCGTCTGAAAGACGAGAT
CGGTCTCTTCTATTGCGCAAATTTGTATAGAAAGGAACATATGGATAACG
ACTCCCTCAGAATGTTAGCCATGGAGGTTGTGGAGAAGTACGGTGGGTAC
TACGTCCCTCTTTCAACGGTCTTCATGGGTGACGAAAGTGAGCCAGAAAT
CGTGGAAAAAGTTTTCGGAGTGGGCAACGGTGGTTTTTATGAGAACGGCT
CTGTCTTTGGGGCTTCGCCAAATACTTGTACGTCGAAGATATTGGAGTGG
TACGACAAGGGTTCTGCCGAGCCTTCGAAAGGTTCCTTGCCATCAAGCCT
TGTGGCGGACATGGGAATAGGCGACGACAAAGCTGCTTTTGCTACTTTCA
AAGATGGATCGCGATTCCTCGGCGCATCTCGAATCTACTATGCCTCGTGG
AGACAAGATCAAAAATGCAGTTCTTCAGCGTCAGCTGCCATGGTATGGGC
TTATGACTGCCAGGTTCCGATATTCAGTCTATGTTCTGAGAAGGATACAG
TTTCCTCTGTGAACGAATCAGATGGAAGAGTAATTGTTATCACGGACTCT
TTGTTCGGTGCGTTTTCGTCTTTGATCAATGAGCTTCCGGGTGTCATGTA
CCGCTTCGACCAAGATGGGACGGACTGGGATTTCATTATTTTCAGTATGG
AGTGGGAGGCGGATTCTGATGGTTTCGAGGTCTACAGCGCTTCGTGTCCG
TTTCGATCGCCCACAGCTCGATATCTAGGCTTCGTTGCAAATGCACACAC
GACGAAGGATATTTCTTCTATCAAAGTTGATGACATCCTTGCCGAATTTC
ATTCAGGAAAGGTGTTCGTTGCTTCAGAGAAATCAAGACATACTGCCAAA
CTAGCATCGATCTTCCGGACCATGCCATCCATTGAAAACGCTTGTCAAAC
GCTTGCTGGATTCCATCCTAGTTTTTCAAGAGACCACGACGAAGTGCATG
ACAACTTGTTGAAAGGATTCCGCAACGGGCAAGTTGCTTTTGAACTGCAG
GTTGATTCCGAACAAAGGGTGATGTACAGATCGTGGGGACATTCAGGTGC
AGTTGATTGTGAATGCAAGATCCAGCCTGGAATGAATGGTCTGTCAGTAG
AGTGGTTGCGACGATACGTGGATGGCCATCTCGTATATGAGACTGTTGGA
GAATTCCTTCGCTAA

protein sequence of Gcaud2447.t1

>Gcaud2447.t1 ID=Gcaud2447.t1|Name=Gcaud2447.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=755bp
MGSAEQFSLTIDDLLLVDVNRFDIWDRRESAVGNGHVWKAACEDYKSSPD
FKSGIPLKMHQIWIGSRQPPCVWLDTWRIDFMNKFATSGSNQGHWQYVLW
DNEKVRDVPMLNRHIFDNESAPQCQADILRLEVLYQYGGVYIDADIVSTQ
RDLRPALDSAKETGFLITYEPDTKDKPYSVLGNSLIACTPKHPLILMLMS
YIKQIYGFKRAHYGVEWVTGPLTYTKVLTHPDMPVTIPPSKDFYPAFHYI
PNPSAIDVTSFDSYCFQFGYTCSGLSQWVAANNKCRKAHQCSYHANIEYP
LGKLKQFPSHGSPTPEDAVIPKVLHQFSFQSDHQRPKRWSATWEEKFCPV
TNFKYELWTWDRLKDEIGLFYCANLYRKEHMDNDSLRMLAMEVVEKYGGY
YVPLSTVFMGDESEPEIVEKVFGVGNGGFYENGSVFGASPNTCTSKILEW
YDKGSAEPSKGSLPSSLVADMGIGDDKAAFATFKDGSRFLGASRIYYASW
RQDQKCSSSASAAMVWAYDCQVPIFSLCSEKDTVSSVNESDGRVIVITDS
LFGAFSSLINELPGVMYRFDQDGTDWDFIIFSMEWEADSDGFEVYSASCP
FRSPTARYLGFVANAHTTKDISSIKVDDILAEFHSGKVFVASEKSRHTAK
LASIFRTMPSIENACQTLAGFHPSFSRDHDEVHDNLLKGFRNGQVAFELQ
VDSEQRVMYRSWGHSGAVDCECKIQPGMNGLSVEWLRRYVDGHLVYETVG
EFLR*

mRNA from alignment at NODE_42_length_67898_cov_4.520993:51496..53865-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2447.t1 ID=Gcaud2447.t1|Name=Gcaud2447.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2370bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:51496..53865- (Gracilaria caudata M_176_S67 male)
ATGGGTTCCGCTGAACAGTTTTCCCTCACGATTGACGACCTTCTCTTAGT
CGACGTGAATAGGTTTGACATTTGGGACAGGCGAGAATCAGCTGTTGGCA
ATGGTCACGTATGGAAGGCAGCCTGCGAAGACTACAAGTCATCGCCGGAT
TTCAAGTCAGGAATTCCTCTCAAGATGCATCAGATATGGATTGGCTCCAG
ACAGCCTCCGTGTGTCTGGCTAGATACCTGGAGAATAGATTTCATGAACA
AGTTCGCCACTTCCGGGTCCAACCAAGGGCACTGGCAGTATGTTCTCTGG
GATAATGAAAAGGTTCGAGATGTGCCAATGCTCAATAGGCACATTTTTGA
CAATGAAAGCGCTCCACAATGCCAGGCAGACATTTTACGTTTGGAAGTTT
TGTATCAGTACGGAGGCGTTTATATCGATGCCGATATCGTGTCAACTCAA
CGAGATCTAAGACCAGCATTGGATTCTGCAAAGGAAACTGGTTTTCTTAT
CACCTACGAACCGGATACGAAGGACAAGCCGTATTCCGTTCTTGGAAACA
GTCTCATCGCATGTACTCCGAAACATCCACTCATTCTTATGCTCATGTCG
TACATCAAACAGATATACGGCTTCAAGAGGGCTCACTATGGTGTGGAATG
GGTCACGGGACCGCTCACCTACACGAAGGTCCTTACTCATCCGGATATGC
CTGTCACTATCCCACCCTCAAAAGACTTCTATCCAGCGTTTCACTACATT
CCTAATCCCTCCGCAATTGATGTCACTTCGTTTGACAGTTATTGCTTTCA
ATTCGGGTAAGTTTCCGAGAGCAACGGGCATCACCAAACTAACTCTGAGT
ATCAATCAATTTTCTGACTTTATCATATTTATACCTACTTTGCATCTCGG
CGCCTACGCAGGTATACTTGCTCAGGACTCTCGCAATGGGTGGCGGCGAA
TAACAAGTGTCGAAAGGCACACCAGTGCAGCTACCATGCCAATATCGAAT
ATCCTCTGGGTAAGCTAAAGCAATTCCCCTCCCATGGTTCTCCTACTCCA
GAGGACGCGGTAATTCCGAAAGTACTTCACCAGTTTTCCTTCCAGTCTGA
TCACCAACGACCGAAACGTTGGTCCGCCACTTGGGAAGAGAAATTTTGTC
CTGTGACGAACTTCAAATACGAACTCTGGACATGGGATCGTCTGAAAGAC
GAGATCGGTCTCTTCTATTGCGCAAATTTGTATAGAAAGGAACATATGGA
TAACGACTCCCTCAGAATGTTAGCCATGGAGGTTGTGGAGAAGTACGGTG
GGTACTACGTCCCTCTTTCAACGGTCTTCATGGGTGACGAAAGTGAGCCA
GAAATCGTGGAAAAAGTTTTCGGAGTGGGCAACGGTGGTTTTTATGAGAA
CGGCTCTGTCTTTGGGGCTTCGCCAAATACTTGTACGTCGAAGATATTGG
AGTGGTACGACAAGGGTTCTGCCGAGCCTTCGAAAGGTTCCTTGCCATCA
AGCCTTGTGGCGGACATGGGAATAGGCGACGACAAAGCTGCTTTTGCTAC
TTTCAAAGATGGATCGCGATTCCTCGGCGCATCTCGAATCTACTATGCCT
CGTGGAGACAAGATCAAAAATGCAGTTCTTCAGCGTCAGCTGCCATGGTA
TGGGCTTATGACTGCCAGGTTCCGATATTCAGTCTATGTTCTGAGAAGGA
TACAGTTTCCTCTGTGAACGAATCAGATGGAAGAGTAATTGTTATCACGG
ACTCTTTGTTCGGTGCGTTTTCGTCTTTGATCAATGAGCTTCCGGGTGTC
ATGTACCGCTTCGACCAAGATGGGACGGACTGGGATTTCATTATTTTCAG
TATGGAGTGGGAGGCGGATTCTGATGGTTTCGAGGTCTACAGCGCTTCGT
GTCCGTTTCGATCGCCCACAGCTCGATATCTAGGCTTCGTTGCAAATGCA
CACACGACGAAGGATATTTCTTCTATCAAAGTTGATGACATCCTTGCCGA
ATTTCATTCAGGAAAGGTGTTCGTTGCTTCAGAGAAATCAAGACATACTG
CCAAACTAGCATCGATCTTCCGGACCATGCCATCCATTGAAAACGCTTGT
CAAACGCTTGCTGGATTCCATCCTAGTTTTTCAAGAGACCACGACGAAGT
GCATGACAACTTGTTGAAAGGATTCCGCAACGGGCAAGTTGCTTTTGAAC
TGCAGGTTGATTCCGAACAAAGGGTGATGTACAGATCGTGGGGACATTCA
GGTGCAGTTGATTGTGAATGCAAGATCCAGCCTGGAATGAATGGTCTGTC
AGTAGAGTGGTTGCGACGATACGTGGATGGCCATCTCGTATATGAGACTG
TTGGAGAATTCCTTCGCTAA

Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:51496..53865-

>Gcaud2447.t1 ID=Gcaud2447.t1|Name=Gcaud2447.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2265bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:51496..53865- (Gracilaria caudata M_176_S67 male)
ATGGGTTCCGCTGAACAGTTTTCCCTCACGATTGACGACCTTCTCTTAGT
CGACGTGAATAGGTTTGACATTTGGGACAGGCGAGAATCAGCTGTTGGCA
ATGGTCACGTATGGAAGGCAGCCTGCGAAGACTACAAGTCATCGCCGGAT
TTCAAGTCAGGAATTCCTCTCAAGATGCATCAGATATGGATTGGCTCCAG
ACAGCCTCCGTGTGTCTGGCTAGATACCTGGAGAATAGATTTCATGAACA
AGTTCGCCACTTCCGGGTCCAACCAAGGGCACTGGCAGTATGTTCTCTGG
GATAATGAAAAGGTTCGAGATGTGCCAATGCTCAATAGGCACATTTTTGA
CAATGAAAGCGCTCCACAATGCCAGGCAGACATTTTACGTTTGGAAGTTT
TGTATCAGTACGGAGGCGTTTATATCGATGCCGATATCGTGTCAACTCAA
CGAGATCTAAGACCAGCATTGGATTCTGCAAAGGAAACTGGTTTTCTTAT
CACCTACGAACCGGATACGAAGGACAAGCCGTATTCCGTTCTTGGAAACA
GTCTCATCGCATGTACTCCGAAACATCCACTCATTCTTATGCTCATGTCG
TACATCAAACAGATATACGGCTTCAAGAGGGCTCACTATGGTGTGGAATG
GGTCACGGGACCGCTCACCTACACGAAGGTCCTTACTCATCCGGATATGC
CTGTCACTATCCCACCCTCAAAAGACTTCTATCCAGCGTTTCACTACATT
CCTAATCCCTCCGCAATTGATGTCACTTCGTTTGACAGTTATTGCTTTCA
ATTCGGGTATACTTGCTCAGGACTCTCGCAATGGGTGGCGGCGAATAACA
AGTGTCGAAAGGCACACCAGTGCAGCTACCATGCCAATATCGAATATCCT
CTGGGTAAGCTAAAGCAATTCCCCTCCCATGGTTCTCCTACTCCAGAGGA
CGCGGTAATTCCGAAAGTACTTCACCAGTTTTCCTTCCAGTCTGATCACC
AACGACCGAAACGTTGGTCCGCCACTTGGGAAGAGAAATTTTGTCCTGTG
ACGAACTTCAAATACGAACTCTGGACATGGGATCGTCTGAAAGACGAGAT
CGGTCTCTTCTATTGCGCAAATTTGTATAGAAAGGAACATATGGATAACG
ACTCCCTCAGAATGTTAGCCATGGAGGTTGTGGAGAAGTACGGTGGGTAC
TACGTCCCTCTTTCAACGGTCTTCATGGGTGACGAAAGTGAGCCAGAAAT
CGTGGAAAAAGTTTTCGGAGTGGGCAACGGTGGTTTTTATGAGAACGGCT
CTGTCTTTGGGGCTTCGCCAAATACTTGTACGTCGAAGATATTGGAGTGG
TACGACAAGGGTTCTGCCGAGCCTTCGAAAGGTTCCTTGCCATCAAGCCT
TGTGGCGGACATGGGAATAGGCGACGACAAAGCTGCTTTTGCTACTTTCA
AAGATGGATCGCGATTCCTCGGCGCATCTCGAATCTACTATGCCTCGTGG
AGACAAGATCAAAAATGCAGTTCTTCAGCGTCAGCTGCCATGGTATGGGC
TTATGACTGCCAGGTTCCGATATTCAGTCTATGTTCTGAGAAGGATACAG
TTTCCTCTGTGAACGAATCAGATGGAAGAGTAATTGTTATCACGGACTCT
TTGTTCGGTGCGTTTTCGTCTTTGATCAATGAGCTTCCGGGTGTCATGTA
CCGCTTCGACCAAGATGGGACGGACTGGGATTTCATTATTTTCAGTATGG
AGTGGGAGGCGGATTCTGATGGTTTCGAGGTCTACAGCGCTTCGTGTCCG
TTTCGATCGCCCACAGCTCGATATCTAGGCTTCGTTGCAAATGCACACAC
GACGAAGGATATTTCTTCTATCAAAGTTGATGACATCCTTGCCGAATTTC
ATTCAGGAAAGGTGTTCGTTGCTTCAGAGAAATCAAGACATACTGCCAAA
CTAGCATCGATCTTCCGGACCATGCCATCCATTGAAAACGCTTGTCAAAC
GCTTGCTGGATTCCATCCTAGTTTTTCAAGAGACCACGACGAAGTGCATG
ACAACTTGTTGAAAGGATTCCGCAACGGGCAAGTTGCTTTTGAACTGCAG
GTTGATTCCGAACAAAGGGTGATGTACAGATCGTGGGGACATTCAGGTGC
AGTTGATTGTGAATGCAAGATCCAGCCTGGAATGAATGGTCTGTCAGTAG
AGTGGTTGCGACGATACGTGGATGGCCATCTCGTATATGAGACTGTTGGA
GAATTCCTTCGCTAA