Gcaud2446.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2446.t1
Unique Name	Gcaud2446.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_42_length_67898_cov_4.520993	contig	NODE_42_length_67898_cov_4.520993:49784..51181 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702986.1
PFAMs	AI-2E_transport,DUF1639
Max annot lvl	2759\|Eukaryota
Evalue	3e-129
EggNOG OGs	COG0628@1\|root,2RYYV@2759\|Eukaryota
Description	AI-2E family transporter
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2446	Gcaud2446	Gracilaria caudata M_176_S67 male	gene	NODE_42_length_67898_cov_4.520993 49784..51181 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2446.t1.start1	Gcaud2446.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_42_length_67898_cov_4.520993 49784..49786 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2446.t1.CDS1	Gcaud2446.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 49784..51181 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2446.t1.exon1	Gcaud2446.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 49784..51181 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2446.t1.stop1	Gcaud2446.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_42_length_67898_cov_4.520993 51179..51181 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2446.t1	Gcaud2446.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_42_length_67898_cov_4.520993 49784..51181 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_42_length_67898_cov_4.520993:49784..51181+
coding sequence from alignment at NODE_42_length_67898_cov_4.520993:49784..51181+

mRNA sequence

>Gcaud2446.t1 ID=Gcaud2446.t1|Name=Gcaud2446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=466bp
MAFLAPQPIRPLLRHSSTPFLHTPPLRYNARPRSRHKRRTASIQCLSGRE
LAGVAVRTSEKALESLDSKRLVSWVGLAIALYALRSFFPVILGTFILGYV
TNSVVQWVSKVTAGHAPRRFVVGVFYAFIITVISGFSLMTIPTVVREGQY
FISTIQSENPYVYVANTMRKALGDDLTTKLEAYVMTSVEMPEATAKGTLP
GKPAPLAVLDSKKHDSDVWTEARSRRLGILLQKSIRSYIAATITLITRLL
GASTKVIFKAVLSLIFSFMIMWDLPVISRGVKRLKTSRLSFAYEELAPVV
TKFGSVVGKSFEAQGLIAIVNTALTTAGLFVLSIPGVGFLSVVTLVCSFI
PVAGVFVSTLPMCIIALSEYGVAKAVAVIFMVILVHLIEAYVLNPQIYSA
HLHLHPFMVLVVLYIAEHSYGIPGLLMAVPVAVYILRTIMTDDSDQKPQK
MLASLRGEQSQPATK*

spliced messenger RNA

>Gcaud2446.t1 ID=Gcaud2446.t1|Name=Gcaud2446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:49784..51181+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCCTCGCTCCGCAGCCCATAAGACCCCTTCTTCGTCACAGTTC
AACCCCTTTCCTGCACACGCCCCCGCTGCGCTACAATGCACGCCCACGCT
CGCGTCACAAGCGCCGCACCGCATCCATACAATGTCTGTCTGGTCGAGAA
TTGGCTGGCGTTGCTGTGCGCACCTCCGAAAAGGCTCTGGAAAGTCTTGA
TTCAAAACGCTTAGTTTCGTGGGTTGGATTGGCAATTGCGCTGTATGCAT
TGCGCTCCTTCTTCCCCGTTATTCTTGGAACGTTCATTCTTGGCTATGTA
ACTAATTCTGTCGTTCAATGGGTGTCAAAAGTTACGGCCGGTCATGCTCC
CAGACGATTCGTTGTCGGCGTCTTTTATGCCTTTATCATTACTGTGATCA
GTGGATTTTCGCTCATGACCATCCCTACAGTCGTGCGAGAGGGGCAGTAC
TTTATATCTACCATTCAGTCTGAGAATCCCTACGTCTACGTTGCGAATAC
GATGCGAAAGGCTCTTGGAGACGATCTCACCACCAAACTCGAGGCCTACG
TCATGACATCGGTTGAGATGCCTGAGGCAACTGCAAAGGGCACCTTACCA
GGAAAACCGGCCCCATTGGCCGTTCTCGACTCCAAAAAGCATGATTCAGA
TGTCTGGACAGAAGCTCGTTCGAGACGTCTGGGCATACTGTTGCAGAAGA
GTATTAGAAGTTACATTGCCGCTACCATAACTCTCATCACGCGTTTGCTG
GGCGCAAGCACTAAGGTGATTTTCAAGGCCGTACTCAGTCTCATTTTCAG
TTTCATGATCATGTGGGATCTTCCAGTAATTTCCCGTGGCGTCAAGCGTT
TAAAGACAAGTCGTTTGTCTTTTGCCTATGAAGAATTGGCGCCGGTTGTT
ACAAAGTTTGGTAGCGTCGTGGGTAAGAGTTTTGAAGCACAGGGCCTTAT
TGCTATTGTGAACACAGCCTTAACAACAGCAGGTCTGTTCGTGCTTTCGA
TTCCGGGAGTTGGTTTTTTGAGTGTTGTCACCCTGGTGTGTTCATTTATT
CCAGTCGCTGGGGTATTCGTCTCAACGCTTCCGATGTGCATCATCGCTCT
GAGTGAGTATGGAGTTGCGAAGGCGGTGGCTGTGATTTTCATGGTGATTC
TGGTGCATTTGATCGAGGCTTACGTGCTGAACCCTCAAATATACTCAGCT
CATCTCCATCTGCATCCGTTTATGGTGCTTGTCGTGCTTTACATTGCCGA
GCATTCTTACGGTATTCCCGGTCTTTTGATGGCGGTGCCAGTCGCTGTGT
ACATACTGAGGACAATTATGACTGACGATTCAGACCAAAAGCCGCAAAAA
ATGCTTGCGTCTCTTCGCGGTGAGCAGAGTCAGCCTGCGACAAAGTGA

protein sequence of Gcaud2446.t1

>Gcaud2446.t1 ID=Gcaud2446.t1|Name=Gcaud2446.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=466bp
MAFLAPQPIRPLLRHSSTPFLHTPPLRYNARPRSRHKRRTASIQCLSGRE
LAGVAVRTSEKALESLDSKRLVSWVGLAIALYALRSFFPVILGTFILGYV
TNSVVQWVSKVTAGHAPRRFVVGVFYAFIITVISGFSLMTIPTVVREGQY
FISTIQSENPYVYVANTMRKALGDDLTTKLEAYVMTSVEMPEATAKGTLP
GKPAPLAVLDSKKHDSDVWTEARSRRLGILLQKSIRSYIAATITLITRLL
GASTKVIFKAVLSLIFSFMIMWDLPVISRGVKRLKTSRLSFAYEELAPVV
TKFGSVVGKSFEAQGLIAIVNTALTTAGLFVLSIPGVGFLSVVTLVCSFI
PVAGVFVSTLPMCIIALSEYGVAKAVAVIFMVILVHLIEAYVLNPQIYSA
HLHLHPFMVLVVLYIAEHSYGIPGLLMAVPVAVYILRTIMTDDSDQKPQK
MLASLRGEQSQPATK*

mRNA from alignment at NODE_42_length_67898_cov_4.520993:49784..51181+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2446.t1 ID=Gcaud2446.t1|Name=Gcaud2446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:49784..51181+ (Gracilaria caudata M_176_S67 male)
ATGGCCTTCCTCGCTCCGCAGCCCATAAGACCCCTTCTTCGTCACAGTTC
AACCCCTTTCCTGCACACGCCCCCGCTGCGCTACAATGCACGCCCACGCT
CGCGTCACAAGCGCCGCACCGCATCCATACAATGTCTGTCTGGTCGAGAA
TTGGCTGGCGTTGCTGTGCGCACCTCCGAAAAGGCTCTGGAAAGTCTTGA
TTCAAAACGCTTAGTTTCGTGGGTTGGATTGGCAATTGCGCTGTATGCAT
TGCGCTCCTTCTTCCCCGTTATTCTTGGAACGTTCATTCTTGGCTATGTA
ACTAATTCTGTCGTTCAATGGGTGTCAAAAGTTACGGCCGGTCATGCTCC
CAGACGATTCGTTGTCGGCGTCTTTTATGCCTTTATCATTACTGTGATCA
GTGGATTTTCGCTCATGACCATCCCTACAGTCGTGCGAGAGGGGCAGTAC
TTTATATCTACCATTCAGTCTGAGAATCCCTACGTCTACGTTGCGAATAC
GATGCGAAAGGCTCTTGGAGACGATCTCACCACCAAACTCGAGGCCTACG
TCATGACATCGGTTGAGATGCCTGAGGCAACTGCAAAGGGCACCTTACCA
GGAAAACCGGCCCCATTGGCCGTTCTCGACTCCAAAAAGCATGATTCAGA
TGTCTGGACAGAAGCTCGTTCGAGACGTCTGGGCATACTGTTGCAGAAGA
GTATTAGAAGTTACATTGCCGCTACCATAACTCTCATCACGCGTTTGCTG
GGCGCAAGCACTAAGGTGATTTTCAAGGCCGTACTCAGTCTCATTTTCAG
TTTCATGATCATGTGGGATCTTCCAGTAATTTCCCGTGGCGTCAAGCGTT
TAAAGACAAGTCGTTTGTCTTTTGCCTATGAAGAATTGGCGCCGGTTGTT
ACAAAGTTTGGTAGCGTCGTGGGTAAGAGTTTTGAAGCACAGGGCCTTAT
TGCTATTGTGAACACAGCCTTAACAACAGCAGGTCTGTTCGTGCTTTCGA
TTCCGGGAGTTGGTTTTTTGAGTGTTGTCACCCTGGTGTGTTCATTTATT
CCAGTCGCTGGGGTATTCGTCTCAACGCTTCCGATGTGCATCATCGCTCT
GAGTGAGTATGGAGTTGCGAAGGCGGTGGCTGTGATTTTCATGGTGATTC
TGGTGCATTTGATCGAGGCTTACGTGCTGAACCCTCAAATATACTCAGCT
CATCTCCATCTGCATCCGTTTATGGTGCTTGTCGTGCTTTACATTGCCGA
GCATTCTTACGGTATTCCCGGTCTTTTGATGGCGGTGCCAGTCGCTGTGT
ACATACTGAGGACAATTATGACTGACGATTCAGACCAAAAGCCGCAAAAA
ATGCTTGCGTCTCTTCGCGGTGAGCAGAGTCAGCCTGCGACAAAGTGA

Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:49784..51181+

>Gcaud2446.t1 ID=Gcaud2446.t1|Name=Gcaud2446.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1398bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:49784..51181+ (Gracilaria caudata M_176_S67 male)
ATGGCCTTCCTCGCTCCGCAGCCCATAAGACCCCTTCTTCGTCACAGTTC
AACCCCTTTCCTGCACACGCCCCCGCTGCGCTACAATGCACGCCCACGCT
CGCGTCACAAGCGCCGCACCGCATCCATACAATGTCTGTCTGGTCGAGAA
TTGGCTGGCGTTGCTGTGCGCACCTCCGAAAAGGCTCTGGAAAGTCTTGA
TTCAAAACGCTTAGTTTCGTGGGTTGGATTGGCAATTGCGCTGTATGCAT
TGCGCTCCTTCTTCCCCGTTATTCTTGGAACGTTCATTCTTGGCTATGTA
ACTAATTCTGTCGTTCAATGGGTGTCAAAAGTTACGGCCGGTCATGCTCC
CAGACGATTCGTTGTCGGCGTCTTTTATGCCTTTATCATTACTGTGATCA
GTGGATTTTCGCTCATGACCATCCCTACAGTCGTGCGAGAGGGGCAGTAC
TTTATATCTACCATTCAGTCTGAGAATCCCTACGTCTACGTTGCGAATAC
GATGCGAAAGGCTCTTGGAGACGATCTCACCACCAAACTCGAGGCCTACG
TCATGACATCGGTTGAGATGCCTGAGGCAACTGCAAAGGGCACCTTACCA
GGAAAACCGGCCCCATTGGCCGTTCTCGACTCCAAAAAGCATGATTCAGA
TGTCTGGACAGAAGCTCGTTCGAGACGTCTGGGCATACTGTTGCAGAAGA
GTATTAGAAGTTACATTGCCGCTACCATAACTCTCATCACGCGTTTGCTG
GGCGCAAGCACTAAGGTGATTTTCAAGGCCGTACTCAGTCTCATTTTCAG
TTTCATGATCATGTGGGATCTTCCAGTAATTTCCCGTGGCGTCAAGCGTT
TAAAGACAAGTCGTTTGTCTTTTGCCTATGAAGAATTGGCGCCGGTTGTT
ACAAAGTTTGGTAGCGTCGTGGGTAAGAGTTTTGAAGCACAGGGCCTTAT
TGCTATTGTGAACACAGCCTTAACAACAGCAGGTCTGTTCGTGCTTTCGA
TTCCGGGAGTTGGTTTTTTGAGTGTTGTCACCCTGGTGTGTTCATTTATT
CCAGTCGCTGGGGTATTCGTCTCAACGCTTCCGATGTGCATCATCGCTCT
GAGTGAGTATGGAGTTGCGAAGGCGGTGGCTGTGATTTTCATGGTGATTC
TGGTGCATTTGATCGAGGCTTACGTGCTGAACCCTCAAATATACTCAGCT
CATCTCCATCTGCATCCGTTTATGGTGCTTGTCGTGCTTTACATTGCCGA
GCATTCTTACGGTATTCCCGGTCTTTTGATGGCGGTGCCAGTCGCTGTGT
ACATACTGAGGACAATTATGACTGACGATTCAGACCAAAAGCCGCAAAAA
ATGCTTGCGTCTCTTCGCGGTGAGCAGAGTCAGCCTGCGACAAAGTGA