Gcaud2442.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2442.t1
Unique NameGcaud2442.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_42_length_67898_cov_4.520993contigNODE_42_length_67898_cov_4.520993:40608..41246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2442Gcaud2442Gracilaria caudata M_176_S67 malegeneNODE_42_length_67898_cov_4.520993 40608..41246 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2442.t1.start1Gcaud2442.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_42_length_67898_cov_4.520993 40608..40610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2442.t1.CDS1Gcaud2442.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_42_length_67898_cov_4.520993 40608..41246 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2442.t1.exon1Gcaud2442.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_42_length_67898_cov_4.520993 40608..41246 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2442.t1.stop1Gcaud2442.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_42_length_67898_cov_4.520993 41244..41246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2442.t1Gcaud2442.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_42_length_67898_cov_4.520993 40608..41246 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2442.t1 ID=Gcaud2442.t1|Name=Gcaud2442.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=213bp
MFLNLPCIRRVYGDRSTLPLTSSSRRAKRRLFALSTGFLAFVVATCVAYV
IHVNHVSTILVETVSGLLGGLRRAVTAIDWKASAAFKVTDAMRMSIAMSM
ALGVLLGVGVGLISGLEPAVVIGVSASMAMGCVFVMSFAILHGVNALRAI
AFALFVSVCLPFGFGLGFGSGILVGIFLGLEDADEVREKTVDFVSNFGDF
IRVVTAFTLEIL*
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spliced messenger RNA

>Gcaud2442.t1 ID=Gcaud2442.t1|Name=Gcaud2442.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=639bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:40608..41246+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCTCAACCTTCCGTGTATTCGGAGAGTTTACGGTGATAGATCCAC
ACTACCCTTGACATCGTCTTCAAGGCGTGCAAAACGGCGACTTTTTGCGT
TGTCAACGGGATTTCTGGCTTTTGTGGTGGCAACATGCGTGGCTTATGTA
ATTCATGTGAACCATGTTTCTACAATACTGGTGGAGACAGTCAGTGGGTT
ACTTGGAGGATTGCGAAGGGCAGTGACGGCAATTGACTGGAAAGCCAGTG
CGGCGTTTAAAGTGACAGATGCAATGCGAATGAGTATTGCGATGAGCATG
GCATTGGGCGTGCTGCTCGGAGTTGGGGTGGGACTTATCTCTGGTTTGGA
ACCCGCGGTTGTTATCGGCGTGAGCGCATCGATGGCCATGGGCTGTGTTT
TCGTAATGTCGTTCGCAATCTTGCATGGAGTGAACGCGTTGCGTGCAATT
GCTTTTGCTCTGTTTGTGTCGGTTTGTCTGCCGTTTGGCTTCGGACTCGG
ATTTGGGTCTGGCATTTTGGTTGGAATATTCCTTGGGTTGGAGGACGCAG
ATGAAGTCCGGGAGAAGACCGTTGACTTCGTAAGCAATTTTGGAGACTTT
ATCAGAGTTGTGACTGCGTTTACATTGGAGATATTGTAA
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protein sequence of Gcaud2442.t1

>Gcaud2442.t1 ID=Gcaud2442.t1|Name=Gcaud2442.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=213bp
MFLNLPCIRRVYGDRSTLPLTSSSRRAKRRLFALSTGFLAFVVATCVAYV
IHVNHVSTILVETVSGLLGGLRRAVTAIDWKASAAFKVTDAMRMSIAMSM
ALGVLLGVGVGLISGLEPAVVIGVSASMAMGCVFVMSFAILHGVNALRAI
AFALFVSVCLPFGFGLGFGSGILVGIFLGLEDADEVREKTVDFVSNFGDF
IRVVTAFTLEIL*
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mRNA from alignment at NODE_42_length_67898_cov_4.520993:40608..41246+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2442.t1 ID=Gcaud2442.t1|Name=Gcaud2442.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=639bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:40608..41246+ (Gracilaria caudata M_176_S67 male)
ATGTTCCTCAACCTTCCGTGTATTCGGAGAGTTTACGGTGATAGATCCAC
ACTACCCTTGACATCGTCTTCAAGGCGTGCAAAACGGCGACTTTTTGCGT
TGTCAACGGGATTTCTGGCTTTTGTGGTGGCAACATGCGTGGCTTATGTA
ATTCATGTGAACCATGTTTCTACAATACTGGTGGAGACAGTCAGTGGGTT
ACTTGGAGGATTGCGAAGGGCAGTGACGGCAATTGACTGGAAAGCCAGTG
CGGCGTTTAAAGTGACAGATGCAATGCGAATGAGTATTGCGATGAGCATG
GCATTGGGCGTGCTGCTCGGAGTTGGGGTGGGACTTATCTCTGGTTTGGA
ACCCGCGGTTGTTATCGGCGTGAGCGCATCGATGGCCATGGGCTGTGTTT
TCGTAATGTCGTTCGCAATCTTGCATGGAGTGAACGCGTTGCGTGCAATT
GCTTTTGCTCTGTTTGTGTCGGTTTGTCTGCCGTTTGGCTTCGGACTCGG
ATTTGGGTCTGGCATTTTGGTTGGAATATTCCTTGGGTTGGAGGACGCAG
ATGAAGTCCGGGAGAAGACCGTTGACTTCGTAAGCAATTTTGGAGACTTT
ATCAGAGTTGTGACTGCGTTTACATTGGAGATATTGTAA
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Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:40608..41246+

>Gcaud2442.t1 ID=Gcaud2442.t1|Name=Gcaud2442.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=639bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:40608..41246+ (Gracilaria caudata M_176_S67 male)
ATGTTCCTCAACCTTCCGTGTATTCGGAGAGTTTACGGTGATAGATCCAC
ACTACCCTTGACATCGTCTTCAAGGCGTGCAAAACGGCGACTTTTTGCGT
TGTCAACGGGATTTCTGGCTTTTGTGGTGGCAACATGCGTGGCTTATGTA
ATTCATGTGAACCATGTTTCTACAATACTGGTGGAGACAGTCAGTGGGTT
ACTTGGAGGATTGCGAAGGGCAGTGACGGCAATTGACTGGAAAGCCAGTG
CGGCGTTTAAAGTGACAGATGCAATGCGAATGAGTATTGCGATGAGCATG
GCATTGGGCGTGCTGCTCGGAGTTGGGGTGGGACTTATCTCTGGTTTGGA
ACCCGCGGTTGTTATCGGCGTGAGCGCATCGATGGCCATGGGCTGTGTTT
TCGTAATGTCGTTCGCAATCTTGCATGGAGTGAACGCGTTGCGTGCAATT
GCTTTTGCTCTGTTTGTGTCGGTTTGTCTGCCGTTTGGCTTCGGACTCGG
ATTTGGGTCTGGCATTTTGGTTGGAATATTCCTTGGGTTGGAGGACGCAG
ATGAAGTCCGGGAGAAGACCGTTGACTTCGTAAGCAATTTTGGAGACTTT
ATCAGAGTTGTGACTGCGTTTACATTGGAGATATTGTAA
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