Gcaud2441.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2441.t1
Unique NameGcaud2441.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_42_length_67898_cov_4.520993contigNODE_42_length_67898_cov_4.520993:36995..38047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702762.1
Preferred nameTIAL1
PFAMsRRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K13201,ko:K19041
GOsGO:0000003,GO:0000323,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001817,GO:0001818,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005685,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006417,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006970,GO:0006972,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007281,GO:0007568,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008340,GO:0008380,GO:0008543,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009628,GO:0009719,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010259,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0016070,GO:0016071,GO:0017091,GO:0017145,GO:0017148,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030532,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034249,GO:0034613,GO:0034641,GO:0035770,GO:0036464,GO:0040012,GO:0042035,GO:0042036,GO:0042127,GO:0042221,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0048024,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051301,GO:0051641,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070717,GO:0070727,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0080090,GO:0090304,GO:0097159,GO:0097165,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1903506,GO:1903608,GO:1904035,GO:1904037,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue3.13e-74
EggNOG OGsCOG0724@1|root,KOG0148@2759|Eukaryota
EC2.3.2.27
DescriptionRNA binding
COG categoryJ
BRITEko00000,ko01000,ko03019,ko03041,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2441Gcaud2441Gracilaria caudata M_176_S67 malegeneNODE_42_length_67898_cov_4.520993 36995..38047 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2441.t1.stop1Gcaud2441.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_42_length_67898_cov_4.520993 36995..36997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2441.t1.CDS1Gcaud2441.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_42_length_67898_cov_4.520993 36995..38047 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2441.t1.exon1Gcaud2441.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_42_length_67898_cov_4.520993 36995..38047 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2441.t1.start1Gcaud2441.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_42_length_67898_cov_4.520993 38045..38047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2441.t1Gcaud2441.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_42_length_67898_cov_4.520993 36995..38047 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2441.t1 ID=Gcaud2441.t1|Name=Gcaud2441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp
MATPALAAQTSLFVGNLDPRVYRQLLHEVFSLAGPVTQCHVVFDKNTGVS
SGFGFVDYTDHATALAAMEKFRGRSIYGKLLTIDWARPTGPGAESASQHC
LFVGNLSSDVTDEQLVSAFSQFGEVTSAKCAKDPVTGKTQGFAFVSFKEK
NEAHSAMESMNGQVLNNRPLRVDWAKGKNNDDDHEKRIPFETILAQTPVN
NVTAYVSGLSVNTPEQAIRSVFEAYGAIREVRIPESIKMQASETMYAFVR
YFEHTSAARAIFECQGGTQVEGRNVQVHWGRENARRAPMLSHRSGYQPHY
SGGFYQGAPPHGGGGYHQGYNQRPPYGGQSYGRAPPTSHHSVSQHRYRPY
*
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spliced messenger RNA

>Gcaud2441.t1 ID=Gcaud2441.t1|Name=Gcaud2441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:36995..38047- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACTCCAGCTCTAGCCGCCCAGACAAGTCTCTTTGTCGGAAACCT
CGACCCCCGCGTTTACCGCCAACTCCTGCATGAGGTTTTCTCCCTGGCTG
GTCCGGTCACCCAGTGCCATGTCGTATTTGACAAGAACACCGGAGTATCA
TCTGGTTTTGGTTTCGTGGACTACACTGACCATGCCACCGCGTTAGCAGC
CATGGAGAAGTTTCGCGGACGCTCGATATACGGCAAGTTGTTAACTATCG
ACTGGGCGCGACCAACTGGTCCGGGTGCGGAATCTGCCTCCCAACATTGT
CTGTTCGTTGGAAATCTCTCCTCAGATGTTACGGATGAACAGTTGGTGTC
AGCGTTTTCTCAGTTCGGGGAAGTAACGTCTGCGAAGTGCGCTAAAGATC
CGGTGACTGGGAAGACGCAGGGTTTCGCGTTTGTTTCTTTTAAGGAGAAA
AACGAAGCTCACTCAGCTATGGAATCTATGAACGGGCAAGTACTGAACAA
CAGACCGTTGCGAGTAGACTGGGCAAAAGGGAAGAACAACGACGACGATC
ACGAAAAACGCATACCGTTCGAAACCATTCTAGCACAAACGCCTGTTAAT
AACGTCACGGCGTATGTATCAGGTCTCAGCGTCAACACCCCAGAGCAGGC
GATTCGAAGCGTCTTTGAGGCTTACGGGGCAATCAGAGAGGTGAGAATTC
CGGAAAGCATAAAGATGCAAGCTAGTGAGACTATGTACGCTTTTGTTCGT
TACTTTGAACACACGTCAGCCGCACGAGCCATATTTGAATGCCAAGGAGG
CACTCAGGTTGAGGGGCGTAATGTCCAGGTTCACTGGGGACGTGAAAACG
CGCGCAGAGCCCCGATGCTGTCACATCGTTCAGGATATCAGCCGCACTAC
TCTGGAGGCTTTTACCAGGGAGCTCCGCCTCATGGGGGCGGCGGCTATCA
CCAGGGTTACAATCAAAGACCACCGTACGGGGGGCAATCTTATGGAAGGG
CGCCTCCAACATCGCATCATTCCGTATCACAACACCGATATCGGCCATAC
TGA
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protein sequence of Gcaud2441.t1

>Gcaud2441.t1 ID=Gcaud2441.t1|Name=Gcaud2441.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=351bp
MATPALAAQTSLFVGNLDPRVYRQLLHEVFSLAGPVTQCHVVFDKNTGVS
SGFGFVDYTDHATALAAMEKFRGRSIYGKLLTIDWARPTGPGAESASQHC
LFVGNLSSDVTDEQLVSAFSQFGEVTSAKCAKDPVTGKTQGFAFVSFKEK
NEAHSAMESMNGQVLNNRPLRVDWAKGKNNDDDHEKRIPFETILAQTPVN
NVTAYVSGLSVNTPEQAIRSVFEAYGAIREVRIPESIKMQASETMYAFVR
YFEHTSAARAIFECQGGTQVEGRNVQVHWGRENARRAPMLSHRSGYQPHY
SGGFYQGAPPHGGGGYHQGYNQRPPYGGQSYGRAPPTSHHSVSQHRYRPY
*
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mRNA from alignment at NODE_42_length_67898_cov_4.520993:36995..38047-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2441.t1 ID=Gcaud2441.t1|Name=Gcaud2441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:36995..38047- (Gracilaria caudata M_176_S67 male)
ATGGCCACTCCAGCTCTAGCCGCCCAGACAAGTCTCTTTGTCGGAAACCT
CGACCCCCGCGTTTACCGCCAACTCCTGCATGAGGTTTTCTCCCTGGCTG
GTCCGGTCACCCAGTGCCATGTCGTATTTGACAAGAACACCGGAGTATCA
TCTGGTTTTGGTTTCGTGGACTACACTGACCATGCCACCGCGTTAGCAGC
CATGGAGAAGTTTCGCGGACGCTCGATATACGGCAAGTTGTTAACTATCG
ACTGGGCGCGACCAACTGGTCCGGGTGCGGAATCTGCCTCCCAACATTGT
CTGTTCGTTGGAAATCTCTCCTCAGATGTTACGGATGAACAGTTGGTGTC
AGCGTTTTCTCAGTTCGGGGAAGTAACGTCTGCGAAGTGCGCTAAAGATC
CGGTGACTGGGAAGACGCAGGGTTTCGCGTTTGTTTCTTTTAAGGAGAAA
AACGAAGCTCACTCAGCTATGGAATCTATGAACGGGCAAGTACTGAACAA
CAGACCGTTGCGAGTAGACTGGGCAAAAGGGAAGAACAACGACGACGATC
ACGAAAAACGCATACCGTTCGAAACCATTCTAGCACAAACGCCTGTTAAT
AACGTCACGGCGTATGTATCAGGTCTCAGCGTCAACACCCCAGAGCAGGC
GATTCGAAGCGTCTTTGAGGCTTACGGGGCAATCAGAGAGGTGAGAATTC
CGGAAAGCATAAAGATGCAAGCTAGTGAGACTATGTACGCTTTTGTTCGT
TACTTTGAACACACGTCAGCCGCACGAGCCATATTTGAATGCCAAGGAGG
CACTCAGGTTGAGGGGCGTAATGTCCAGGTTCACTGGGGACGTGAAAACG
CGCGCAGAGCCCCGATGCTGTCACATCGTTCAGGATATCAGCCGCACTAC
TCTGGAGGCTTTTACCAGGGAGCTCCGCCTCATGGGGGCGGCGGCTATCA
CCAGGGTTACAATCAAAGACCACCGTACGGGGGGCAATCTTATGGAAGGG
CGCCTCCAACATCGCATCATTCCGTATCACAACACCGATATCGGCCATAC
TGA
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Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:36995..38047-

>Gcaud2441.t1 ID=Gcaud2441.t1|Name=Gcaud2441.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1053bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:36995..38047- (Gracilaria caudata M_176_S67 male)
ATGGCCACTCCAGCTCTAGCCGCCCAGACAAGTCTCTTTGTCGGAAACCT
CGACCCCCGCGTTTACCGCCAACTCCTGCATGAGGTTTTCTCCCTGGCTG
GTCCGGTCACCCAGTGCCATGTCGTATTTGACAAGAACACCGGAGTATCA
TCTGGTTTTGGTTTCGTGGACTACACTGACCATGCCACCGCGTTAGCAGC
CATGGAGAAGTTTCGCGGACGCTCGATATACGGCAAGTTGTTAACTATCG
ACTGGGCGCGACCAACTGGTCCGGGTGCGGAATCTGCCTCCCAACATTGT
CTGTTCGTTGGAAATCTCTCCTCAGATGTTACGGATGAACAGTTGGTGTC
AGCGTTTTCTCAGTTCGGGGAAGTAACGTCTGCGAAGTGCGCTAAAGATC
CGGTGACTGGGAAGACGCAGGGTTTCGCGTTTGTTTCTTTTAAGGAGAAA
AACGAAGCTCACTCAGCTATGGAATCTATGAACGGGCAAGTACTGAACAA
CAGACCGTTGCGAGTAGACTGGGCAAAAGGGAAGAACAACGACGACGATC
ACGAAAAACGCATACCGTTCGAAACCATTCTAGCACAAACGCCTGTTAAT
AACGTCACGGCGTATGTATCAGGTCTCAGCGTCAACACCCCAGAGCAGGC
GATTCGAAGCGTCTTTGAGGCTTACGGGGCAATCAGAGAGGTGAGAATTC
CGGAAAGCATAAAGATGCAAGCTAGTGAGACTATGTACGCTTTTGTTCGT
TACTTTGAACACACGTCAGCCGCACGAGCCATATTTGAATGCCAAGGAGG
CACTCAGGTTGAGGGGCGTAATGTCCAGGTTCACTGGGGACGTGAAAACG
CGCGCAGAGCCCCGATGCTGTCACATCGTTCAGGATATCAGCCGCACTAC
TCTGGAGGCTTTTACCAGGGAGCTCCGCCTCATGGGGGCGGCGGCTATCA
CCAGGGTTACAATCAAAGACCACCGTACGGGGGGCAATCTTATGGAAGGG
CGCCTCCAACATCGCATCATTCCGTATCACAACACCGATATCGGCCATAC
TGA
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