Gcaud2439.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2439.t1
Unique Name	Gcaud2439.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	582

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_42_length_67898_cov_4.520993	contig	NODE_42_length_67898_cov_4.520993:29436..31181 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2439	Gcaud2439	Gracilaria caudata M_176_S67 male	gene	NODE_42_length_67898_cov_4.520993 29436..31181 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2439.t1.stop1	Gcaud2439.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_42_length_67898_cov_4.520993 29436..29438 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2439.t1.CDS1	Gcaud2439.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 29436..31181 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2439.t1.exon1	Gcaud2439.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 29436..31181 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2439.t1.start1	Gcaud2439.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_42_length_67898_cov_4.520993 31179..31181 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2439.t1	Gcaud2439.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_42_length_67898_cov_4.520993 29436..31181 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_42_length_67898_cov_4.520993:29436..31181-
coding sequence from alignment at NODE_42_length_67898_cov_4.520993:29436..31181-

mRNA sequence

>Gcaud2439.t1 ID=Gcaud2439.t1|Name=Gcaud2439.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp
MSDIVSIENMSDVSDTIVLQRPRGSFSGIPDFVIHIDEPVWNVILYICLN
LIALPFLEYLSDRLVRKTASMKLLNKEKVLLSDSRLGILSLYSTYYGRHR
NILPMIFLGFVVIVMETFAEFCSSSIELSEKTQIDVWKIRETHTFSHIHG
ELPSERNSTTLQGGMDNRLRLENVSLREDRVESVLHSKDCIFGVEDLVLR
LNESGSTNGFEPVLREHYMLAKLSSSKMYLSRDNSSIVCDYFRSKPREVE
VWMPAVSEENGTYFTRAAQNIALRTNSRPPINWSRRVRLGNSVHAVYGFR
NGRQAANKSHADAYTCVQLYEGDDCGDSCESVACAIYAIRNRTETFGFGE
GSVVSNEDGQIADVKRWRLESKSRANQDEKEVEKKEEKKEEKKEKKKEKE
KEGKNGSNLDPLSELTVRFAMRMYLEGYLWATENEEVEKRRVVTMARYVQ
SISGESLVNGELRELDSRFIQPRPDLVRQVPTVTVLAVIPWSLFLLIVMV
QLLLLRRLERKIRVTKTMRGVKKGAAKVETSMQWFRRDFVKLLSENGFNA
ELNDISLRLESVGGKRRLNILHNLDASSKQP*

spliced messenger RNA

>Gcaud2439.t1 ID=Gcaud2439.t1|Name=Gcaud2439.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:29436..31181- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGACATTGTGTCAATCGAAAATATGAGTGATGTGAGTGATACTAT
TGTACTGCAAAGACCAAGAGGTAGCTTCAGTGGTATTCCTGACTTCGTCA
TCCACATTGACGAACCAGTGTGGAACGTTATCTTGTACATCTGTCTCAAT
CTTATTGCTTTGCCCTTCTTGGAATATCTTTCAGATCGTCTTGTCCGTAA
AACCGCCAGCATGAAACTTCTCAACAAAGAAAAGGTCTTGCTCTCCGATT
CTCGATTGGGAATTCTATCGCTGTACTCTACATATTATGGGCGGCATCGA
AATATACTTCCCATGATATTTCTTGGGTTCGTGGTTATCGTGATGGAGAC
CTTCGCAGAGTTCTGCAGTTCGTCGATAGAGCTCAGCGAGAAAACGCAGA
TAGATGTATGGAAGATTAGGGAAACCCATACTTTTTCTCACATCCACGGA
GAGCTACCGAGTGAGAGGAACTCTACAACTTTGCAAGGTGGCATGGACAA
TCGCTTGCGGCTGGAGAATGTGAGTTTGAGAGAAGACAGAGTGGAATCCG
TGTTGCACTCGAAAGACTGTATCTTTGGCGTAGAAGATTTAGTTTTACGG
TTGAACGAATCTGGAAGTACCAATGGCTTTGAACCCGTATTACGAGAGCA
CTATATGCTCGCAAAACTGTCGTCATCAAAAATGTATCTTTCTAGAGATA
ACAGTAGCATTGTGTGTGATTACTTCAGGTCGAAGCCACGGGAAGTTGAA
GTGTGGATGCCAGCCGTGAGTGAGGAAAATGGGACGTATTTCACTAGAGC
GGCGCAGAACATTGCTCTACGGACAAACTCTCGTCCACCTATCAACTGGT
CAAGGCGAGTCAGACTTGGAAACTCTGTGCATGCTGTTTATGGGTTTCGA
AATGGGAGGCAAGCTGCGAACAAGAGCCATGCAGATGCGTATACGTGCGT
TCAATTGTATGAAGGGGATGATTGTGGGGACTCCTGTGAGTCTGTTGCAT
GTGCGATTTATGCAATTCGAAACCGGACAGAGACGTTTGGTTTTGGGGAG
GGCTCCGTCGTAAGTAATGAAGACGGACAAATTGCTGATGTCAAACGATG
GAGGTTGGAATCAAAGAGTCGTGCGAATCAGGACGAAAAGGAGGTCGAAA
AGAAGGAGGAGAAGAAGGAAGAAAAGAAGGAGAAAAAGAAGGAGAAGGAG
AAGGAGGGTAAGAACGGCTCGAATTTAGATCCTCTATCTGAGCTGACGGT
TCGTTTTGCGATGCGAATGTACCTCGAAGGTTACCTCTGGGCGACCGAAA
ATGAAGAAGTGGAAAAAAGACGCGTTGTGACCATGGCGAGATATGTGCAA
AGCATATCTGGTGAATCGCTCGTGAACGGCGAGCTTCGAGAGCTGGATTC
GCGTTTCATTCAACCACGCCCAGACTTGGTTAGACAAGTACCAACAGTAA
CAGTACTGGCTGTTATTCCGTGGTCGTTGTTCCTACTTATTGTTATGGTT
CAACTACTGCTGTTGCGAAGACTAGAGCGAAAGATAAGAGTGACGAAAAC
GATGCGGGGTGTGAAAAAGGGAGCTGCTAAAGTGGAGACCAGCATGCAGT
GGTTCCGAAGAGATTTCGTGAAGTTGCTGAGTGAAAACGGCTTTAATGCG
GAGCTAAATGATATATCGCTGCGGCTTGAAAGCGTGGGTGGGAAGCGTCG
ATTGAATATTTTGCACAACCTCGATGCGAGCAGCAAGCAGCCGTGA

protein sequence of Gcaud2439.t1

>Gcaud2439.t1 ID=Gcaud2439.t1|Name=Gcaud2439.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=582bp
MSDIVSIENMSDVSDTIVLQRPRGSFSGIPDFVIHIDEPVWNVILYICLN
LIALPFLEYLSDRLVRKTASMKLLNKEKVLLSDSRLGILSLYSTYYGRHR
NILPMIFLGFVVIVMETFAEFCSSSIELSEKTQIDVWKIRETHTFSHIHG
ELPSERNSTTLQGGMDNRLRLENVSLREDRVESVLHSKDCIFGVEDLVLR
LNESGSTNGFEPVLREHYMLAKLSSSKMYLSRDNSSIVCDYFRSKPREVE
VWMPAVSEENGTYFTRAAQNIALRTNSRPPINWSRRVRLGNSVHAVYGFR
NGRQAANKSHADAYTCVQLYEGDDCGDSCESVACAIYAIRNRTETFGFGE
GSVVSNEDGQIADVKRWRLESKSRANQDEKEVEKKEEKKEEKKEKKKEKE
KEGKNGSNLDPLSELTVRFAMRMYLEGYLWATENEEVEKRRVVTMARYVQ
SISGESLVNGELRELDSRFIQPRPDLVRQVPTVTVLAVIPWSLFLLIVMV
QLLLLRRLERKIRVTKTMRGVKKGAAKVETSMQWFRRDFVKLLSENGFNA
ELNDISLRLESVGGKRRLNILHNLDASSKQP*

mRNA from alignment at NODE_42_length_67898_cov_4.520993:29436..31181-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2439.t1 ID=Gcaud2439.t1|Name=Gcaud2439.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:29436..31181- (Gracilaria caudata M_176_S67 male)
ATGAGCGACATTGTGTCAATCGAAAATATGAGTGATGTGAGTGATACTAT
TGTACTGCAAAGACCAAGAGGTAGCTTCAGTGGTATTCCTGACTTCGTCA
TCCACATTGACGAACCAGTGTGGAACGTTATCTTGTACATCTGTCTCAAT
CTTATTGCTTTGCCCTTCTTGGAATATCTTTCAGATCGTCTTGTCCGTAA
AACCGCCAGCATGAAACTTCTCAACAAAGAAAAGGTCTTGCTCTCCGATT
CTCGATTGGGAATTCTATCGCTGTACTCTACATATTATGGGCGGCATCGA
AATATACTTCCCATGATATTTCTTGGGTTCGTGGTTATCGTGATGGAGAC
CTTCGCAGAGTTCTGCAGTTCGTCGATAGAGCTCAGCGAGAAAACGCAGA
TAGATGTATGGAAGATTAGGGAAACCCATACTTTTTCTCACATCCACGGA
GAGCTACCGAGTGAGAGGAACTCTACAACTTTGCAAGGTGGCATGGACAA
TCGCTTGCGGCTGGAGAATGTGAGTTTGAGAGAAGACAGAGTGGAATCCG
TGTTGCACTCGAAAGACTGTATCTTTGGCGTAGAAGATTTAGTTTTACGG
TTGAACGAATCTGGAAGTACCAATGGCTTTGAACCCGTATTACGAGAGCA
CTATATGCTCGCAAAACTGTCGTCATCAAAAATGTATCTTTCTAGAGATA
ACAGTAGCATTGTGTGTGATTACTTCAGGTCGAAGCCACGGGAAGTTGAA
GTGTGGATGCCAGCCGTGAGTGAGGAAAATGGGACGTATTTCACTAGAGC
GGCGCAGAACATTGCTCTACGGACAAACTCTCGTCCACCTATCAACTGGT
CAAGGCGAGTCAGACTTGGAAACTCTGTGCATGCTGTTTATGGGTTTCGA
AATGGGAGGCAAGCTGCGAACAAGAGCCATGCAGATGCGTATACGTGCGT
TCAATTGTATGAAGGGGATGATTGTGGGGACTCCTGTGAGTCTGTTGCAT
GTGCGATTTATGCAATTCGAAACCGGACAGAGACGTTTGGTTTTGGGGAG
GGCTCCGTCGTAAGTAATGAAGACGGACAAATTGCTGATGTCAAACGATG
GAGGTTGGAATCAAAGAGTCGTGCGAATCAGGACGAAAAGGAGGTCGAAA
AGAAGGAGGAGAAGAAGGAAGAAAAGAAGGAGAAAAAGAAGGAGAAGGAG
AAGGAGGGTAAGAACGGCTCGAATTTAGATCCTCTATCTGAGCTGACGGT
TCGTTTTGCGATGCGAATGTACCTCGAAGGTTACCTCTGGGCGACCGAAA
ATGAAGAAGTGGAAAAAAGACGCGTTGTGACCATGGCGAGATATGTGCAA
AGCATATCTGGTGAATCGCTCGTGAACGGCGAGCTTCGAGAGCTGGATTC
GCGTTTCATTCAACCACGCCCAGACTTGGTTAGACAAGTACCAACAGTAA
CAGTACTGGCTGTTATTCCGTGGTCGTTGTTCCTACTTATTGTTATGGTT
CAACTACTGCTGTTGCGAAGACTAGAGCGAAAGATAAGAGTGACGAAAAC
GATGCGGGGTGTGAAAAAGGGAGCTGCTAAAGTGGAGACCAGCATGCAGT
GGTTCCGAAGAGATTTCGTGAAGTTGCTGAGTGAAAACGGCTTTAATGCG
GAGCTAAATGATATATCGCTGCGGCTTGAAAGCGTGGGTGGGAAGCGTCG
ATTGAATATTTTGCACAACCTCGATGCGAGCAGCAAGCAGCCGTGA

Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:29436..31181-

>Gcaud2439.t1 ID=Gcaud2439.t1|Name=Gcaud2439.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1746bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:29436..31181- (Gracilaria caudata M_176_S67 male)
ATGAGCGACATTGTGTCAATCGAAAATATGAGTGATGTGAGTGATACTAT
TGTACTGCAAAGACCAAGAGGTAGCTTCAGTGGTATTCCTGACTTCGTCA
TCCACATTGACGAACCAGTGTGGAACGTTATCTTGTACATCTGTCTCAAT
CTTATTGCTTTGCCCTTCTTGGAATATCTTTCAGATCGTCTTGTCCGTAA
AACCGCCAGCATGAAACTTCTCAACAAAGAAAAGGTCTTGCTCTCCGATT
CTCGATTGGGAATTCTATCGCTGTACTCTACATATTATGGGCGGCATCGA
AATATACTTCCCATGATATTTCTTGGGTTCGTGGTTATCGTGATGGAGAC
CTTCGCAGAGTTCTGCAGTTCGTCGATAGAGCTCAGCGAGAAAACGCAGA
TAGATGTATGGAAGATTAGGGAAACCCATACTTTTTCTCACATCCACGGA
GAGCTACCGAGTGAGAGGAACTCTACAACTTTGCAAGGTGGCATGGACAA
TCGCTTGCGGCTGGAGAATGTGAGTTTGAGAGAAGACAGAGTGGAATCCG
TGTTGCACTCGAAAGACTGTATCTTTGGCGTAGAAGATTTAGTTTTACGG
TTGAACGAATCTGGAAGTACCAATGGCTTTGAACCCGTATTACGAGAGCA
CTATATGCTCGCAAAACTGTCGTCATCAAAAATGTATCTTTCTAGAGATA
ACAGTAGCATTGTGTGTGATTACTTCAGGTCGAAGCCACGGGAAGTTGAA
GTGTGGATGCCAGCCGTGAGTGAGGAAAATGGGACGTATTTCACTAGAGC
GGCGCAGAACATTGCTCTACGGACAAACTCTCGTCCACCTATCAACTGGT
CAAGGCGAGTCAGACTTGGAAACTCTGTGCATGCTGTTTATGGGTTTCGA
AATGGGAGGCAAGCTGCGAACAAGAGCCATGCAGATGCGTATACGTGCGT
TCAATTGTATGAAGGGGATGATTGTGGGGACTCCTGTGAGTCTGTTGCAT
GTGCGATTTATGCAATTCGAAACCGGACAGAGACGTTTGGTTTTGGGGAG
GGCTCCGTCGTAAGTAATGAAGACGGACAAATTGCTGATGTCAAACGATG
GAGGTTGGAATCAAAGAGTCGTGCGAATCAGGACGAAAAGGAGGTCGAAA
AGAAGGAGGAGAAGAAGGAAGAAAAGAAGGAGAAAAAGAAGGAGAAGGAG
AAGGAGGGTAAGAACGGCTCGAATTTAGATCCTCTATCTGAGCTGACGGT
TCGTTTTGCGATGCGAATGTACCTCGAAGGTTACCTCTGGGCGACCGAAA
ATGAAGAAGTGGAAAAAAGACGCGTTGTGACCATGGCGAGATATGTGCAA
AGCATATCTGGTGAATCGCTCGTGAACGGCGAGCTTCGAGAGCTGGATTC
GCGTTTCATTCAACCACGCCCAGACTTGGTTAGACAAGTACCAACAGTAA
CAGTACTGGCTGTTATTCCGTGGTCGTTGTTCCTACTTATTGTTATGGTT
CAACTACTGCTGTTGCGAAGACTAGAGCGAAAGATAAGAGTGACGAAAAC
GATGCGGGGTGTGAAAAAGGGAGCTGCTAAAGTGGAGACCAGCATGCAGT
GGTTCCGAAGAGATTTCGTGAAGTTGCTGAGTGAAAACGGCTTTAATGCG
GAGCTAAATGATATATCGCTGCGGCTTGAAAGCGTGGGTGGGAAGCGTCG
ATTGAATATTTTGCACAACCTCGATGCGAGCAGCAAGCAGCCGTGA