Gcaud2438.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2438.t1
Unique Name	Gcaud2438.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	555

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_42_length_67898_cov_4.520993	contig	NODE_42_length_67898_cov_4.520993:26711..28375 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2438	Gcaud2438	Gracilaria caudata M_176_S67 male	gene	NODE_42_length_67898_cov_4.520993 26711..28375 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2438.t1.stop1	Gcaud2438.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_42_length_67898_cov_4.520993 26711..26713 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2438.t1.CDS1	Gcaud2438.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_42_length_67898_cov_4.520993 26711..28375 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2438.t1.exon1	Gcaud2438.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_42_length_67898_cov_4.520993 26711..28375 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2438.t1.start1	Gcaud2438.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_42_length_67898_cov_4.520993 28373..28375 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2438.t1	Gcaud2438.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_42_length_67898_cov_4.520993 26711..28375 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_42_length_67898_cov_4.520993:26711..28375-
coding sequence from alignment at NODE_42_length_67898_cov_4.520993:26711..28375-

mRNA sequence

>Gcaud2438.t1 ID=Gcaud2438.t1|Name=Gcaud2438.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp
MSIVGAATNITPSIVLERRDQQPGAVPEFVIHIDEPVWNVIVYICLNLVA
LPVMEYLSDILVRKTATMKLLKDERVLLSDSRLGILSLYSTYYGRYRSLV
LMILLGFMVIVMETFAEFCSSSAELSEKMQIDVWKIREIHNFSYIHGGIQ
AVESPAGGGMGFNLRGENANVSVREDRLESVLNSKDCIWAENLVLRLNDS
GSTSDFEPIIRAHYLNGKLSSSRLFLSSDNSSIVCDFFKSKPLGVEVWMP
AVGEKNGTYVTTAAQNIALRTNSRPPINWSKRIRFGESVHTVYGFRNGKR
GVNKTFEDSYTCLQMYEDEDCGDSCESVACAFHAMRNFNLIFGFGEGSIV
STEEEQIADIRRWRMESRSAVSKKPAPSSSRTGTLSERTVRFVVRMYHEG
FLWATLSEEIEKKRVVAMSRYVRSMRSESLVNGELQELQSTFIQPRAEMV
RQVPTITALAAIPLSLFVLIVVVQLVLLRRLERKIRMRKTIRGVAKGAAK
VETSMQWFRHDFVKLLACKGLNMELGDISLRLENVGGKRRLQILPDISQL
HKQL*

spliced messenger RNA

>Gcaud2438.t1 ID=Gcaud2438.t1|Name=Gcaud2438.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1665bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:26711..28375- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATTGTTGGGGCTGCCACAAACATAACGCCCTCTATTGTACTCGA
GCGGCGAGACCAGCAGCCAGGGGCAGTACCAGAGTTCGTCATCCACATTG
ACGAACCAGTATGGAACGTTATCGTGTACATCTGTCTCAATCTTGTCGCT
TTGCCCGTCATGGAGTATCTGTCAGACATTCTTGTCCGCAAGACCGCTAC
GATGAAACTTCTCAAGGATGAAAGGGTCTTGCTCTCCGACTCTAGACTGG
GAATTCTATCGCTCTACTCTACGTATTATGGACGGTATCGGAGTCTAGTA
CTCATGATACTCCTCGGGTTTATGGTTATTGTGATGGAGACGTTCGCAGA
GTTTTGTAGTTCGTCAGCTGAACTAAGCGAAAAAATGCAGATAGACGTAT
GGAAGATTCGTGAAATCCATAATTTCTCCTACATCCACGGAGGGATACAG
GCTGTGGAAAGCCCTGCTGGAGGTGGTATGGGTTTCAACTTGCGGGGCGA
GAATGCGAATGTGAGTGTGAGAGAAGACAGACTGGAGTCCGTGTTGAACT
CGAAAGACTGTATCTGGGCAGAGAATTTAGTTTTACGATTGAACGACTCC
GGAAGTACCAGTGACTTTGAGCCGATAATTCGAGCACACTACCTGAACGG
AAAACTGTCTTCATCAAGATTGTTTCTCTCTAGTGATAACAGTAGCATTG
TGTGTGACTTCTTCAAGTCGAAGCCACTGGGAGTGGAAGTGTGGATGCCA
GCCGTGGGAGAGAAGAACGGAACATACGTTACTACAGCGGCGCAGAATAT
TGCTCTACGAACAAACTCTCGCCCACCTATCAACTGGTCGAAGCGAATCC
GATTTGGAGAATCGGTGCATACAGTTTATGGGTTTCGAAATGGGAAGCGA
GGTGTGAACAAAACTTTTGAAGACTCTTACACGTGCCTTCAAATGTATGA
AGACGAAGATTGTGGGGATTCGTGTGAGTCTGTTGCATGTGCTTTTCACG
CAATGAGAAACTTCAACTTGATATTTGGTTTCGGAGAAGGCTCCATCGTA
AGTACTGAAGAAGAACAAATTGCTGATATCAGACGATGGAGAATGGAATC
GAGAAGTGCTGTGAGCAAGAAACCGGCCCCATCAAGCTCACGGACTGGTA
CTCTATCTGAGAGGACGGTTCGCTTTGTGGTACGCATGTATCATGAAGGT
TTCCTGTGGGCAACTCTGAGCGAAGAAATCGAGAAAAAACGCGTTGTGGC
TATGTCAAGATATGTGCGAAGCATGCGTAGTGAATCACTCGTGAACGGTG
AGCTTCAGGAACTACAATCCACTTTCATTCAACCTCGGGCGGAAATGGTT
CGTCAGGTACCAACAATAACTGCTCTTGCTGCTATTCCGTTGTCGTTGTT
CGTATTAATTGTTGTGGTTCAATTGGTGCTGTTGCGAAGACTCGAGCGAA
AGATTAGAATGAGAAAAACGATACGAGGAGTGGCTAAAGGAGCGGCTAAA
GTGGAGACAAGCATGCAGTGGTTCCGACACGATTTCGTGAAGTTGCTGGC
CTGCAAAGGCTTGAATATGGAACTGGGTGACATATCGTTACGGCTTGAAA
ACGTGGGTGGGAAGCGCCGGTTACAAATTCTGCCGGATATTAGTCAGCTC
CACAAGCAGCTATAA

protein sequence of Gcaud2438.t1

>Gcaud2438.t1 ID=Gcaud2438.t1|Name=Gcaud2438.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=555bp
MSIVGAATNITPSIVLERRDQQPGAVPEFVIHIDEPVWNVIVYICLNLVA
LPVMEYLSDILVRKTATMKLLKDERVLLSDSRLGILSLYSTYYGRYRSLV
LMILLGFMVIVMETFAEFCSSSAELSEKMQIDVWKIREIHNFSYIHGGIQ
AVESPAGGGMGFNLRGENANVSVREDRLESVLNSKDCIWAENLVLRLNDS
GSTSDFEPIIRAHYLNGKLSSSRLFLSSDNSSIVCDFFKSKPLGVEVWMP
AVGEKNGTYVTTAAQNIALRTNSRPPINWSKRIRFGESVHTVYGFRNGKR
GVNKTFEDSYTCLQMYEDEDCGDSCESVACAFHAMRNFNLIFGFGEGSIV
STEEEQIADIRRWRMESRSAVSKKPAPSSSRTGTLSERTVRFVVRMYHEG
FLWATLSEEIEKKRVVAMSRYVRSMRSESLVNGELQELQSTFIQPRAEMV
RQVPTITALAAIPLSLFVLIVVVQLVLLRRLERKIRMRKTIRGVAKGAAK
VETSMQWFRHDFVKLLACKGLNMELGDISLRLENVGGKRRLQILPDISQL
HKQL*

mRNA from alignment at NODE_42_length_67898_cov_4.520993:26711..28375-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2438.t1 ID=Gcaud2438.t1|Name=Gcaud2438.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1665bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:26711..28375- (Gracilaria caudata M_176_S67 male)
ATGAGCATTGTTGGGGCTGCCACAAACATAACGCCCTCTATTGTACTCGA
GCGGCGAGACCAGCAGCCAGGGGCAGTACCAGAGTTCGTCATCCACATTG
ACGAACCAGTATGGAACGTTATCGTGTACATCTGTCTCAATCTTGTCGCT
TTGCCCGTCATGGAGTATCTGTCAGACATTCTTGTCCGCAAGACCGCTAC
GATGAAACTTCTCAAGGATGAAAGGGTCTTGCTCTCCGACTCTAGACTGG
GAATTCTATCGCTCTACTCTACGTATTATGGACGGTATCGGAGTCTAGTA
CTCATGATACTCCTCGGGTTTATGGTTATTGTGATGGAGACGTTCGCAGA
GTTTTGTAGTTCGTCAGCTGAACTAAGCGAAAAAATGCAGATAGACGTAT
GGAAGATTCGTGAAATCCATAATTTCTCCTACATCCACGGAGGGATACAG
GCTGTGGAAAGCCCTGCTGGAGGTGGTATGGGTTTCAACTTGCGGGGCGA
GAATGCGAATGTGAGTGTGAGAGAAGACAGACTGGAGTCCGTGTTGAACT
CGAAAGACTGTATCTGGGCAGAGAATTTAGTTTTACGATTGAACGACTCC
GGAAGTACCAGTGACTTTGAGCCGATAATTCGAGCACACTACCTGAACGG
AAAACTGTCTTCATCAAGATTGTTTCTCTCTAGTGATAACAGTAGCATTG
TGTGTGACTTCTTCAAGTCGAAGCCACTGGGAGTGGAAGTGTGGATGCCA
GCCGTGGGAGAGAAGAACGGAACATACGTTACTACAGCGGCGCAGAATAT
TGCTCTACGAACAAACTCTCGCCCACCTATCAACTGGTCGAAGCGAATCC
GATTTGGAGAATCGGTGCATACAGTTTATGGGTTTCGAAATGGGAAGCGA
GGTGTGAACAAAACTTTTGAAGACTCTTACACGTGCCTTCAAATGTATGA
AGACGAAGATTGTGGGGATTCGTGTGAGTCTGTTGCATGTGCTTTTCACG
CAATGAGAAACTTCAACTTGATATTTGGTTTCGGAGAAGGCTCCATCGTA
AGTACTGAAGAAGAACAAATTGCTGATATCAGACGATGGAGAATGGAATC
GAGAAGTGCTGTGAGCAAGAAACCGGCCCCATCAAGCTCACGGACTGGTA
CTCTATCTGAGAGGACGGTTCGCTTTGTGGTACGCATGTATCATGAAGGT
TTCCTGTGGGCAACTCTGAGCGAAGAAATCGAGAAAAAACGCGTTGTGGC
TATGTCAAGATATGTGCGAAGCATGCGTAGTGAATCACTCGTGAACGGTG
AGCTTCAGGAACTACAATCCACTTTCATTCAACCTCGGGCGGAAATGGTT
CGTCAGGTACCAACAATAACTGCTCTTGCTGCTATTCCGTTGTCGTTGTT
CGTATTAATTGTTGTGGTTCAATTGGTGCTGTTGCGAAGACTCGAGCGAA
AGATTAGAATGAGAAAAACGATACGAGGAGTGGCTAAAGGAGCGGCTAAA
GTGGAGACAAGCATGCAGTGGTTCCGACACGATTTCGTGAAGTTGCTGGC
CTGCAAAGGCTTGAATATGGAACTGGGTGACATATCGTTACGGCTTGAAA
ACGTGGGTGGGAAGCGCCGGTTACAAATTCTGCCGGATATTAGTCAGCTC
CACAAGCAGCTATAA

Coding sequence (CDS) from alignment at NODE_42_length_67898_cov_4.520993:26711..28375-

>Gcaud2438.t1 ID=Gcaud2438.t1|Name=Gcaud2438.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1665bp|location=Sequence derived from alignment at NODE_42_length_67898_cov_4.520993:26711..28375- (Gracilaria caudata M_176_S67 male)
ATGAGCATTGTTGGGGCTGCCACAAACATAACGCCCTCTATTGTACTCGA
GCGGCGAGACCAGCAGCCAGGGGCAGTACCAGAGTTCGTCATCCACATTG
ACGAACCAGTATGGAACGTTATCGTGTACATCTGTCTCAATCTTGTCGCT
TTGCCCGTCATGGAGTATCTGTCAGACATTCTTGTCCGCAAGACCGCTAC
GATGAAACTTCTCAAGGATGAAAGGGTCTTGCTCTCCGACTCTAGACTGG
GAATTCTATCGCTCTACTCTACGTATTATGGACGGTATCGGAGTCTAGTA
CTCATGATACTCCTCGGGTTTATGGTTATTGTGATGGAGACGTTCGCAGA
GTTTTGTAGTTCGTCAGCTGAACTAAGCGAAAAAATGCAGATAGACGTAT
GGAAGATTCGTGAAATCCATAATTTCTCCTACATCCACGGAGGGATACAG
GCTGTGGAAAGCCCTGCTGGAGGTGGTATGGGTTTCAACTTGCGGGGCGA
GAATGCGAATGTGAGTGTGAGAGAAGACAGACTGGAGTCCGTGTTGAACT
CGAAAGACTGTATCTGGGCAGAGAATTTAGTTTTACGATTGAACGACTCC
GGAAGTACCAGTGACTTTGAGCCGATAATTCGAGCACACTACCTGAACGG
AAAACTGTCTTCATCAAGATTGTTTCTCTCTAGTGATAACAGTAGCATTG
TGTGTGACTTCTTCAAGTCGAAGCCACTGGGAGTGGAAGTGTGGATGCCA
GCCGTGGGAGAGAAGAACGGAACATACGTTACTACAGCGGCGCAGAATAT
TGCTCTACGAACAAACTCTCGCCCACCTATCAACTGGTCGAAGCGAATCC
GATTTGGAGAATCGGTGCATACAGTTTATGGGTTTCGAAATGGGAAGCGA
GGTGTGAACAAAACTTTTGAAGACTCTTACACGTGCCTTCAAATGTATGA
AGACGAAGATTGTGGGGATTCGTGTGAGTCTGTTGCATGTGCTTTTCACG
CAATGAGAAACTTCAACTTGATATTTGGTTTCGGAGAAGGCTCCATCGTA
AGTACTGAAGAAGAACAAATTGCTGATATCAGACGATGGAGAATGGAATC
GAGAAGTGCTGTGAGCAAGAAACCGGCCCCATCAAGCTCACGGACTGGTA
CTCTATCTGAGAGGACGGTTCGCTTTGTGGTACGCATGTATCATGAAGGT
TTCCTGTGGGCAACTCTGAGCGAAGAAATCGAGAAAAAACGCGTTGTGGC
TATGTCAAGATATGTGCGAAGCATGCGTAGTGAATCACTCGTGAACGGTG
AGCTTCAGGAACTACAATCCACTTTCATTCAACCTCGGGCGGAAATGGTT
CGTCAGGTACCAACAATAACTGCTCTTGCTGCTATTCCGTTGTCGTTGTT
CGTATTAATTGTTGTGGTTCAATTGGTGCTGTTGCGAAGACTCGAGCGAA
AGATTAGAATGAGAAAAACGATACGAGGAGTGGCTAAAGGAGCGGCTAAA
GTGGAGACAAGCATGCAGTGGTTCCGACACGATTTCGTGAAGTTGCTGGC
CTGCAAAGGCTTGAATATGGAACTGGGTGACATATCGTTACGGCTTGAAA
ACGTGGGTGGGAAGCGCCGGTTACAAATTCTGCCGGATATTAGTCAGCTC
CACAAGCAGCTATAA