Gcaud2425.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2425.t1
Unique Name	Gcaud2425.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	457

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_295_length_31939_cov_4.445679	contig	NODE_295_length_31939_cov_4.445679:22308..23678 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO43011
Preferred name	DDX49
PFAMs	DEAD,Helicase_C
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14778
GOs	GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
Evalue	1.19e-120
EggNOG OGs	COG0513@1\|root,KOG0340@2759\|Eukaryota,38C0R@33154\|Opisthokonta,3BE6I@33208\|Metazoa
EC	3.6.4.13
Description	helicase activity
COG category	A
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2425	Gcaud2425	Gracilaria caudata M_176_S67 male	gene	NODE_295_length_31939_cov_4.445679 22308..23678 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2425.t1.start1	Gcaud2425.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_295_length_31939_cov_4.445679 22308..22310 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2425.t1.CDS1	Gcaud2425.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_295_length_31939_cov_4.445679 22308..23678 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2425.t1.exon1	Gcaud2425.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_295_length_31939_cov_4.445679 22308..23678 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2425.t1.stop1	Gcaud2425.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_295_length_31939_cov_4.445679 23676..23678 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2425.t1	Gcaud2425.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_295_length_31939_cov_4.445679 22308..23678 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_295_length_31939_cov_4.445679:22308..23678+
coding sequence from alignment at NODE_295_length_31939_cov_4.445679:22308..23678+

mRNA sequence

>Gcaud2425.t1 ID=Gcaud2425.t1|Name=Gcaud2425.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=457bp
MSSFRALGLKPWLEQACNTVGIHRPTPIQSACIPPILQGRNVIGAAQTGT
GKTAAFVLPILQQLAHDPFGVFALVLTPTRELAFQIAQQISAFGARIAVR
QLVLVGGVYQLTQAAALAKLPHIVVATPGRLALMISKGYVSLNKVRFLVL
DEADRLLDPTYLEDLLLILKACSAPKRQTLMFSATMTSSLNQLQQVAMHQ
QNTFRFDARENRFATVDSLSQRYIFLPEHLKECHLVNLLKEEYPSSSVIV
FVARCETAQLLLNMLNLLGMNKVAALHSDMKQVRRIESLQLFKANVVRAL
IATDVASRGLDIPACELVINYDLPRAVSTYVHRVGRTARAGRSGLALSFV
AQQDVQLVKAIEEKIERKLDEHNGHSEKKVMENLAMTLKARQLAKMRLHD
DGYFEKADARRAQSRNAAKRRKRRHNDEPGIKKPRHKQSEQRSAQQQHQQ
HTQQPV*

spliced messenger RNA

>Gcaud2425.t1 ID=Gcaud2425.t1|Name=Gcaud2425.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:22308..23678+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCGTTTCGCGCGCTGGGGCTCAAGCCCTGGCTCGAGCAAGCATG
TAACACCGTTGGAATTCATCGCCCCACACCCATTCAGAGCGCGTGCATCC
CGCCCATCTTGCAGGGTCGCAACGTCATCGGCGCCGCGCAGACTGGCACC
GGCAAGACCGCTGCCTTTGTACTACCCATCCTGCAACAGCTGGCGCACGA
CCCGTTCGGCGTCTtcgcgctcgtgctcacacccacgcgcgagctggcgt
tccagatcgcgcAACAGATCTCTGCGTTTGGTGCGCGTATTGCGGTGCGA
CAGCTTGTGCTGGTGGGCGGCGTTTACCAGCTGACGCAGGCGGCTGCGTT
GGCGAAGTTGCCGCATATTGTGGTGGCTACGCCAGGACGACTGGCGCTTA
TGATTTCGAAGGGGTATGTTTCTTTGAATAAGGTGCGCTTTTTGGTGCTT
GATGAGGCGGATCGATTGCTTGACCCGACGTATTTGGAGGACCTTCTACT
TATCTTGAAGGCGTGCTCTGCTCCGAAGCGACAGACGTTGATGTTTTCTG
CTACCATGACGTCTTCGCTTAATCAGTTACAACAGGTGGCCATGCATCAA
CAAAATACTTTTCGTTTCGATGCTCGCGAAAACCGCTTTGCTACAGTGGA
TTCACTCAGTCAACGCTATATTTTCCTTCCCGAGCATCTCAAGGAGTGTC
ATCTCGTCAATCTACTCAAGGAAGAATATCCCTCATCCAGTGTCATCGTT
TTCGTGGCGCGATGCGAAACAGCCCAATTGCTACTCAACATGCTCAATTT
GCTTGGAATGAACAAAGTTGCCGCCTTGCATTCCGATATGAAACAAGTTC
GTCGAATCGAATCGTTGCAACTCTTCAAGGCAAATGTGGTTCGAGCGCTC
ATTGCTACAGATGTTGCGAGCAGGGGACTTGATATCCCTGCATGTGAATT
GGTGATAAACTATGATCTACCTCGAGCCGTTTCCACGTATGTGCATCGCG
TGGGCCGCACTGCGCGCGCTGGTAGATCAGGTTTAGCTCTCAGCTTTGTT
GCACAGCAAGATGTACAGCTTGTTAAAGCTATTGAAGAGAAGATTGAGCG
CAAATTGGACGAACACAACGGCCATTCGGAGAAGAAGGTTATGGAGAATC
TGGCAATGACGTTGAAGGCACGCCAGCTTGCGAAGATGCGCCTTCATGAC
GATGGCTACTTTGAGAAAGCAGACGCCCGAAGAGCGCAATCGAGAAATGC
CGCGAAGCGGCGGAAACGCCGCCATAACGATGAACCCGGCATAAAAAAGC
CGCGCCACAAACAGTCTGAGCAACGGTCTGCTcagcaacaacatcaacaa
catactcaacaacCAGTCTAA

protein sequence of Gcaud2425.t1

>Gcaud2425.t1 ID=Gcaud2425.t1|Name=Gcaud2425.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=457bp
MSSFRALGLKPWLEQACNTVGIHRPTPIQSACIPPILQGRNVIGAAQTGT
GKTAAFVLPILQQLAHDPFGVFALVLTPTRELAFQIAQQISAFGARIAVR
QLVLVGGVYQLTQAAALAKLPHIVVATPGRLALMISKGYVSLNKVRFLVL
DEADRLLDPTYLEDLLLILKACSAPKRQTLMFSATMTSSLNQLQQVAMHQ
QNTFRFDARENRFATVDSLSQRYIFLPEHLKECHLVNLLKEEYPSSSVIV
FVARCETAQLLLNMLNLLGMNKVAALHSDMKQVRRIESLQLFKANVVRAL
IATDVASRGLDIPACELVINYDLPRAVSTYVHRVGRTARAGRSGLALSFV
AQQDVQLVKAIEEKIERKLDEHNGHSEKKVMENLAMTLKARQLAKMRLHD
DGYFEKADARRAQSRNAAKRRKRRHNDEPGIKKPRHKQSEQRSAQQQHQQ
HTQQPV*

mRNA from alignment at NODE_295_length_31939_cov_4.445679:22308..23678+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2425.t1 ID=Gcaud2425.t1|Name=Gcaud2425.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:22308..23678+ (Gracilaria caudata M_176_S67 male)
ATGAGCTCGTTTCGCGCGCTGGGGCTCAAGCCCTGGCTCGAGCAAGCATG
TAACACCGTTGGAATTCATCGCCCCACACCCATTCAGAGCGCGTGCATCC
CGCCCATCTTGCAGGGTCGCAACGTCATCGGCGCCGCGCAGACTGGCACC
GGCAAGACCGCTGCCTTTGTACTACCCATCCTGCAACAGCTGGCGCACGA
CCCGTTCGGCGTCTtcgcgctcgtgctcacacccacgcgcgagctggcgt
tccagatcgcgcAACAGATCTCTGCGTTTGGTGCGCGTATTGCGGTGCGA
CAGCTTGTGCTGGTGGGCGGCGTTTACCAGCTGACGCAGGCGGCTGCGTT
GGCGAAGTTGCCGCATATTGTGGTGGCTACGCCAGGACGACTGGCGCTTA
TGATTTCGAAGGGGTATGTTTCTTTGAATAAGGTGCGCTTTTTGGTGCTT
GATGAGGCGGATCGATTGCTTGACCCGACGTATTTGGAGGACCTTCTACT
TATCTTGAAGGCGTGCTCTGCTCCGAAGCGACAGACGTTGATGTTTTCTG
CTACCATGACGTCTTCGCTTAATCAGTTACAACAGGTGGCCATGCATCAA
CAAAATACTTTTCGTTTCGATGCTCGCGAAAACCGCTTTGCTACAGTGGA
TTCACTCAGTCAACGCTATATTTTCCTTCCCGAGCATCTCAAGGAGTGTC
ATCTCGTCAATCTACTCAAGGAAGAATATCCCTCATCCAGTGTCATCGTT
TTCGTGGCGCGATGCGAAACAGCCCAATTGCTACTCAACATGCTCAATTT
GCTTGGAATGAACAAAGTTGCCGCCTTGCATTCCGATATGAAACAAGTTC
GTCGAATCGAATCGTTGCAACTCTTCAAGGCAAATGTGGTTCGAGCGCTC
ATTGCTACAGATGTTGCGAGCAGGGGACTTGATATCCCTGCATGTGAATT
GGTGATAAACTATGATCTACCTCGAGCCGTTTCCACGTATGTGCATCGCG
TGGGCCGCACTGCGCGCGCTGGTAGATCAGGTTTAGCTCTCAGCTTTGTT
GCACAGCAAGATGTACAGCTTGTTAAAGCTATTGAAGAGAAGATTGAGCG
CAAATTGGACGAACACAACGGCCATTCGGAGAAGAAGGTTATGGAGAATC
TGGCAATGACGTTGAAGGCACGCCAGCTTGCGAAGATGCGCCTTCATGAC
GATGGCTACTTTGAGAAAGCAGACGCCCGAAGAGCGCAATCGAGAAATGC
CGCGAAGCGGCGGAAACGCCGCCATAACGATGAACCCGGCATAAAAAAGC
CGCGCCACAAACAGTCTGAGCAACGGTCTGCTcagcaacaacatcaacaa
catactcaacaacCAGTCTAA

Coding sequence (CDS) from alignment at NODE_295_length_31939_cov_4.445679:22308..23678+

>Gcaud2425.t1 ID=Gcaud2425.t1|Name=Gcaud2425.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1371bp|location=Sequence derived from alignment at NODE_295_length_31939_cov_4.445679:22308..23678+ (Gracilaria caudata M_176_S67 male)
ATGAGCTCGTTTCGCGCGCTGGGGCTCAAGCCCTGGCTCGAGCAAGCATG
TAACACCGTTGGAATTCATCGCCCCACACCCATTCAGAGCGCGTGCATCC
CGCCCATCTTGCAGGGTCGCAACGTCATCGGCGCCGCGCAGACTGGCACC
GGCAAGACCGCTGCCTTTGTACTACCCATCCTGCAACAGCTGGCGCACGA
CCCGTTCGGCGTCTtcgcgctcgtgctcacacccacgcgcgagctggcgt
tccagatcgcgcAACAGATCTCTGCGTTTGGTGCGCGTATTGCGGTGCGA
CAGCTTGTGCTGGTGGGCGGCGTTTACCAGCTGACGCAGGCGGCTGCGTT
GGCGAAGTTGCCGCATATTGTGGTGGCTACGCCAGGACGACTGGCGCTTA
TGATTTCGAAGGGGTATGTTTCTTTGAATAAGGTGCGCTTTTTGGTGCTT
GATGAGGCGGATCGATTGCTTGACCCGACGTATTTGGAGGACCTTCTACT
TATCTTGAAGGCGTGCTCTGCTCCGAAGCGACAGACGTTGATGTTTTCTG
CTACCATGACGTCTTCGCTTAATCAGTTACAACAGGTGGCCATGCATCAA
CAAAATACTTTTCGTTTCGATGCTCGCGAAAACCGCTTTGCTACAGTGGA
TTCACTCAGTCAACGCTATATTTTCCTTCCCGAGCATCTCAAGGAGTGTC
ATCTCGTCAATCTACTCAAGGAAGAATATCCCTCATCCAGTGTCATCGTT
TTCGTGGCGCGATGCGAAACAGCCCAATTGCTACTCAACATGCTCAATTT
GCTTGGAATGAACAAAGTTGCCGCCTTGCATTCCGATATGAAACAAGTTC
GTCGAATCGAATCGTTGCAACTCTTCAAGGCAAATGTGGTTCGAGCGCTC
ATTGCTACAGATGTTGCGAGCAGGGGACTTGATATCCCTGCATGTGAATT
GGTGATAAACTATGATCTACCTCGAGCCGTTTCCACGTATGTGCATCGCG
TGGGCCGCACTGCGCGCGCTGGTAGATCAGGTTTAGCTCTCAGCTTTGTT
GCACAGCAAGATGTACAGCTTGTTAAAGCTATTGAAGAGAAGATTGAGCG
CAAATTGGACGAACACAACGGCCATTCGGAGAAGAAGGTTATGGAGAATC
TGGCAATGACGTTGAAGGCACGCCAGCTTGCGAAGATGCGCCTTCATGAC
GATGGCTACTTTGAGAAAGCAGACGCCCGAAGAGCGCAATCGAGAAATGC
CGCGAAGCGGCGGAAACGCCGCCATAACGATGAACCCGGCATAAAAAAGC
CGCGCCACAAACAGTCTGAGCAACGGTCTGCTcagcaacaacatcaacaa
catactcaacaacCAGTCTAA