Gcaud237.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud237.t1
Unique NameGcaud237.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_527_length_22935_cov_4.449440contigNODE_527_length_22935_cov_4.449440:2326..3195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud237Gcaud237Gracilaria caudata M_176_S67 malegeneNODE_527_length_22935_cov_4.449440 2326..3195 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud237.t1.stop1Gcaud237.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_527_length_22935_cov_4.449440 2326..2328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud237.t1.CDS1Gcaud237.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_527_length_22935_cov_4.449440 2326..3195 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud237.t1.exon1Gcaud237.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_527_length_22935_cov_4.449440 2326..3195 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud237.t1.start1Gcaud237.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_527_length_22935_cov_4.449440 3193..3195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud237.t1Gcaud237.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_527_length_22935_cov_4.449440 2326..3195 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud237.t1 ID=Gcaud237.t1|Name=Gcaud237.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=290bp
MEQHSSSVERPFAMAPHNSEPSMSPPLSKLKRFRFSQTFDFFLLRAIREA
DAHIPKWGHTDELFNRVLSTFLKLVPEKVFWYMNKLSKKTLIDHFKRLVP
ARKDQNQHNEKASGIIKEYGEKETLLDDLISEIDEKAEAARIKKEELTAH
EQSLIEAGEMIRETALKRKSSATRKTEETDTASQPGSKRSCRHEATKSDD
AITALILEQSKEQKMREEEKVKIEQRRLEIEQDRVQKEIAGYETLQLQSE
RRISLEEKRFELEKVEREQAIQERKHLLNIMAAFSKKLQ*
back to top

spliced messenger RNA

>Gcaud237.t1 ID=Gcaud237.t1|Name=Gcaud237.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_527_length_22935_cov_4.449440:2326..3195- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAACATAGCTCATCAGTTGAACGCCCTTTCGCTATGGCACCGCA
TAATTCCGAACCATCGATGAGTCCTCCACTTTCGAAGTTGAAACGCTTTC
GATTCTCACAAACGTTTGATTTTTTCTTACTTCGTGCAATTCGTGAAGCA
GATGCTCACATCCCAAAATGGGGCCACACAGATGAGTTGTTTAATAGAGT
ACTCTCAACATTTCTGAAACTTGTTCCAGAAAAGGTTTTCTGGTATATGA
ACAAGCTAAGCAAGAAAACCCTCATTGATCACTTTAAGCGTTTAGTACCT
GCAAGGAAGGACCAGAACCAACATAATGAAAAGGCGAGTGGCATTATTAA
GGAATATGGCGAGAAAGAAACACTTCTTGATGATTTGATATCGGAAATTG
ACGAGAAAGCGGAAGCTGCTCGTATAAAAAAGGAAGAGCTTACAGCACAC
GAGCAGAGTCTTATTGAGGCGGGTGAGATGATCAGGGAGACGGCTCTCAA
ACGAAAGAGTTCTGCAACACGCAAGACGGAAGAAACTGATACTGCGTCGC
AGCCTGGGAGCAAGAGATCATGTCGTCATGAGGCTACAAAATCGGATGAT
GCAATCACAGCTCTGATTCTGGAGCAATCAAAAGAGCAGAAAATGCGGGA
AGAGGAGAAGGTCAAAATAGAACAACGTAGATTGGAGATAGAACAAGACC
GTGTGCAGAAGGAAATAGCGGGATACGAAACTTTGCAGCTTCAGTCGGAA
AGGCGGATATCTCTGGAGGAGAAGCGTTTTGAATTAGAAAAGGTAGAACG
CGAGCAAGCCATCCAAGAACGGAAACATTTGTTGAACATCATGGCAGCAT
TCAGCAAAAAACTACAATGA
back to top

protein sequence of Gcaud237.t1

>Gcaud237.t1 ID=Gcaud237.t1|Name=Gcaud237.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=290bp
MEQHSSSVERPFAMAPHNSEPSMSPPLSKLKRFRFSQTFDFFLLRAIREA
DAHIPKWGHTDELFNRVLSTFLKLVPEKVFWYMNKLSKKTLIDHFKRLVP
ARKDQNQHNEKASGIIKEYGEKETLLDDLISEIDEKAEAARIKKEELTAH
EQSLIEAGEMIRETALKRKSSATRKTEETDTASQPGSKRSCRHEATKSDD
AITALILEQSKEQKMREEEKVKIEQRRLEIEQDRVQKEIAGYETLQLQSE
RRISLEEKRFELEKVEREQAIQERKHLLNIMAAFSKKLQ*
back to top

mRNA from alignment at NODE_527_length_22935_cov_4.449440:2326..3195-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud237.t1 ID=Gcaud237.t1|Name=Gcaud237.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_527_length_22935_cov_4.449440:2326..3195- (Gracilaria caudata M_176_S67 male)
ATGGAGCAACATAGCTCATCAGTTGAACGCCCTTTCGCTATGGCACCGCA
TAATTCCGAACCATCGATGAGTCCTCCACTTTCGAAGTTGAAACGCTTTC
GATTCTCACAAACGTTTGATTTTTTCTTACTTCGTGCAATTCGTGAAGCA
GATGCTCACATCCCAAAATGGGGCCACACAGATGAGTTGTTTAATAGAGT
ACTCTCAACATTTCTGAAACTTGTTCCAGAAAAGGTTTTCTGGTATATGA
ACAAGCTAAGCAAGAAAACCCTCATTGATCACTTTAAGCGTTTAGTACCT
GCAAGGAAGGACCAGAACCAACATAATGAAAAGGCGAGTGGCATTATTAA
GGAATATGGCGAGAAAGAAACACTTCTTGATGATTTGATATCGGAAATTG
ACGAGAAAGCGGAAGCTGCTCGTATAAAAAAGGAAGAGCTTACAGCACAC
GAGCAGAGTCTTATTGAGGCGGGTGAGATGATCAGGGAGACGGCTCTCAA
ACGAAAGAGTTCTGCAACACGCAAGACGGAAGAAACTGATACTGCGTCGC
AGCCTGGGAGCAAGAGATCATGTCGTCATGAGGCTACAAAATCGGATGAT
GCAATCACAGCTCTGATTCTGGAGCAATCAAAAGAGCAGAAAATGCGGGA
AGAGGAGAAGGTCAAAATAGAACAACGTAGATTGGAGATAGAACAAGACC
GTGTGCAGAAGGAAATAGCGGGATACGAAACTTTGCAGCTTCAGTCGGAA
AGGCGGATATCTCTGGAGGAGAAGCGTTTTGAATTAGAAAAGGTAGAACG
CGAGCAAGCCATCCAAGAACGGAAACATTTGTTGAACATCATGGCAGCAT
TCAGCAAAAAACTACAATGA
back to top

Coding sequence (CDS) from alignment at NODE_527_length_22935_cov_4.449440:2326..3195-

>Gcaud237.t1 ID=Gcaud237.t1|Name=Gcaud237.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=870bp|location=Sequence derived from alignment at NODE_527_length_22935_cov_4.449440:2326..3195- (Gracilaria caudata M_176_S67 male)
ATGGAGCAACATAGCTCATCAGTTGAACGCCCTTTCGCTATGGCACCGCA
TAATTCCGAACCATCGATGAGTCCTCCACTTTCGAAGTTGAAACGCTTTC
GATTCTCACAAACGTTTGATTTTTTCTTACTTCGTGCAATTCGTGAAGCA
GATGCTCACATCCCAAAATGGGGCCACACAGATGAGTTGTTTAATAGAGT
ACTCTCAACATTTCTGAAACTTGTTCCAGAAAAGGTTTTCTGGTATATGA
ACAAGCTAAGCAAGAAAACCCTCATTGATCACTTTAAGCGTTTAGTACCT
GCAAGGAAGGACCAGAACCAACATAATGAAAAGGCGAGTGGCATTATTAA
GGAATATGGCGAGAAAGAAACACTTCTTGATGATTTGATATCGGAAATTG
ACGAGAAAGCGGAAGCTGCTCGTATAAAAAAGGAAGAGCTTACAGCACAC
GAGCAGAGTCTTATTGAGGCGGGTGAGATGATCAGGGAGACGGCTCTCAA
ACGAAAGAGTTCTGCAACACGCAAGACGGAAGAAACTGATACTGCGTCGC
AGCCTGGGAGCAAGAGATCATGTCGTCATGAGGCTACAAAATCGGATGAT
GCAATCACAGCTCTGATTCTGGAGCAATCAAAAGAGCAGAAAATGCGGGA
AGAGGAGAAGGTCAAAATAGAACAACGTAGATTGGAGATAGAACAAGACC
GTGTGCAGAAGGAAATAGCGGGATACGAAACTTTGCAGCTTCAGTCGGAA
AGGCGGATATCTCTGGAGGAGAAGCGTTTTGAATTAGAAAAGGTAGAACG
CGAGCAAGCCATCCAAGAACGGAAACATTTGTTGAACATCATGGCAGCAT
TCAGCAAAAAACTACAATGA
back to top