|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1173023.KE650771_gene4975 |
| PFAMs | DUF748,TamB |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG ko | ko:K09800 |
| Evalue | 2.29e-13 |
| EggNOG OGs | COG2911@1|root,COG2911@2|Bacteria,1G1RU@1117|Cyanobacteria,1JH3A@1189|Stigonemataceae |
| Description | TamB, inner membrane protein subunit of TAM complex |
| COG category | S |
| BRITE | ko00000,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2325.t1.stop1 | Gcaud2325.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_3311_length_3658_cov_4.022989 2550..2552 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2325.t1 ID=Gcaud2325.t1|Name=Gcaud2325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=851bp XLPPLPEDPLDIDEHAAFRPYDSMMFNFKVSDVDGGNLLKWYGGVYGGMA TKAVGLVSGEGVLAGHAKDANCRVVWKSTTPPPEVFLNPETPKSASSASA LVAATSSKDAYKDRQKGNSGSGQAAKADEGVAPASNRDQRSPVPQSGFLG GGKYRGLVYIKLGDPLEARRVKVRTIVNEFDARRAGWSDDQLQDILRHTP LLEAAADTYFKGVMFQRPILPPGATTMPRTPRMELLGVDGALAVRKLSLN DVAFPEIMTGSFSFSVSDFSLSLKERDAKTGKASESKNGTQLSNGEAHRS IDELTLSASLKGNAFLRLRLGSTEADADISKNEQGDIVAMVSSKNLDIHS FVGSGSEFFSGEAVRGTIDMNMGVNLNSRTGRGRIHIRNPSLGRLAFTSV GGEVLWRDQNVFLRKGSLKYRRSEYRVNAGYELPLEQGSDFKWNMNVNVQ KANVRDIAQLVLSGNAVARAMQSPVNSAEQSRITHPNGPLWIQRLSQSHE SGFETSVESWKVPTDVPFAEQVAYYRRMMKELDAPPKPKVRKKRYIRTRD APLTLADLRGDVTGIISMKYDSRLGEISSSPSPAGVLLQAALDQLTRTSF SFRLVGADWMIGDIPIDNVQTLGSFEEGVLDIGTTLFQNQEQFGAEVDCR LTSAGSLQASAMLDNVPAGLMNRYVQAPVDIDGTCSGRLQVEGNITNPRA LGRMVWTNASLNGKQVRGAKTDLAFVNGRCLLNVNARIGGSPRGVPEQSD EERLSSLFWNDSVIAALQDLATRTGAKFEGQPEASAKQVDAKREDEEAVS VLVSAPVRFYVRRYLQRRTPSTFWSLLEPVLGGAYPIDDEWVLADVNVKK * back to topspliced messenger RNA >Gcaud2325.t1 ID=Gcaud2325.t1|Name=Gcaud2325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2551bp|location=Sequence derived from alignment at NODE_3311_length_3658_cov_4.022989:2..2552+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
TCTCCCGCCTCTGCCAGAAGATCCGCTGGACATCGACGAGCATGCAGCAT TTCGTCCGTACGACTCCATGATGTTTAACTTCAAGGTATCGGACGTTGAT GGTGGTAATCTCTTGAAATGGTATGGAGGGGTATACGGCGGAATGGCTAC AAAAGCTGTGGGACTGGTGAGCGGCGAAGGAGTGCTGGCCGGACATGCAA AAGACGCAAACTGTCGGGTAGTATGGAAGTCCACAACCCCCCCACCTGAA GTGTTTCTGAATCCAGAGACCCCCAAATCCGCCTCTAGTGCATCAGCATT AGTTGCTGCCACCAGTTCGAAAGATGCTTACAAGGACAGACAGAAGGGGA ACTCAGGCTCAGGTCAAGCCGCAAAGGCAGATGAAGGTGTGGCACCTGCT AGCAATCGTGATCAAAGGTCCCCAGTTCCGCAATCTGGCTTTCTTGGAGG GGGCAAATATCGCGGGCTTGTGTACATCAAGCTTGGGGACCCTCTAGAAG CAAGACGAGTTAAAGTGCGAACAATTGTGAATGAATTTGACGCCCGCCGA GCGGGTTGGTCCGACGACCAACTTCAAGATATACTCCGGCACACTCCGCT TCTTGAAGCTGCGGCAGATACGTACTTCAAAGGAGTGATGTTTCAGAGAC CCATTCTCCCCCCGGGTGCCACGACCATGCCACGCACACCGCGTATGGAA CTGCTCGGAGTTGACGGTGCGCTTGCAGTGCGGAAGCTTTCACTGAATGA CGTTGCGTTTCCAGAGATAATGACGGGTTCTTTCTCGTTCAGTGTTTCGG ACTTTTCCCTTTCCCTCAAGGAAAGGGATGCAAAGACCGGGAAAGCATCA GAGAGTAAGAATGGAACACAGTTATCGAATGGAGAGGCTCACAGAAGCAT AGATGAACTCACATTGTCCGCATCTTTGAAAGGAAACGCTTTCCTTCGAT TGCGTCTTGGATCTACTGAAGCAGACGCTGACATATCGAAAAATGAGCAA GGAGACATAGTTGCGATGGTGAGCAGCAAAAACTTGGACATTCACAGCTT TGTGGGGAGCGGTAGTGAGTTTTTCAGTGGTGAAGCCGTTCGAGGAACGA TAGATATGAACATGGGTGTGAATCTGAACAGCCGAACGGGAAGAGGTCGG ATCCACATTCGAAACCCTTCTCTTGGAAGGCTGGCGTTTACGTCAGTAGG TGGCGAAGTGCTTTGGCGTGATCAGAATGTCTTCTTACGAAAAGGGAGTC TGAAGTATCGTCGTTCTGAATACAGGGTGAACGCCGGGTATGAGCTACCG CTGGAACAAGGAAGTGACTTCAAGTGGAATATGAACGTCAACGTTCAGAA GGCCAATGTTAGGGATATTGCTCAGCTTGTTCTTTCCGGAAATGCGGTGG CTCGCGCGATGCAATCCCCCGTGAACAGCGCAGAGCAAAGTCGCATCACC CACCCAAACGGACCTTTGTGGATCCAGAGGTTGTCACAGTCCCACGAGTC CGGGTTCGAAACATCTGTTGAATCTTGGAAAGTTCCTACAGATGTTCCTT TCGCTGAACAAGTGGCGTACTATCGCCGGATGATGAAGGAACTGGATGCA CCTCCAAAGCCGAAAGTTCGAAAGAAACGATACATCAGAACTCGAGACGC CCCACTGACATTGGCTGACCTGCGTGGAGATGTGACAGGAATCATTTCTA TGAAGTACGATTCGCGGCTGGGGGAAATCAGTTCGAGCCCTTCGCCAGCG GGGGTGCTGCTCCAGGCCGCTCTTGATCAGTTAACAAGGACGTCTTTCTC ATTCAGACTGGTTGGCGCGGACTGGATGATTGGTGATATTCCGATTGACA ACGTGCAGACGTTGGGATCGTTTGAGGAAGGGGTACTGGACATTGGAACC ACACTGTTCCAAAATCAAGAACAGTTTGGAGCTGAAGTAGATTGTCGACT AACAAGCGCTGGATCCTTACAAGCTTCTGCAATGCTGGACAATGTTCCGG CGGGCTTGATGAATCGATACGTCCAAGCGCCCGTTGACATTGACGGGACG TGTAGTGGTCGACTTCAGGTGGAGGGGAACATTACGAACCCACGAGCTCT TGGTCGCATGGTGTGGACTAATGCATCACTGAATGGCAAGCAGGTTAGAG GGGCCAAAACAGATCTGGCATTCGTGAACGGCCGATGTCTTCTGAACGTG AACGCCAGAATCGGCGGATCACCCAGGGGCGTCCCAGAACAGAGTGACGA AGAAAGACTGAGTAGCTTGTTCTGGAATGATAGCGTGATCGCAGCGCTGC AGGATTTGGCTACTAGAACGGGTGCCAAGTTTGAAGGACAGCCGGAGGCG TCTGCAAAGCAGGTGGACGCAAAGCGAGAGGATGAAGAAGCAGTGTCCGT GCTTGTGAGTGCTCCAGTGCGATTCTATGTACGTCGATATCTGCAAAGGA GAACTCCAAGCACTTTCTGGTCGTTGCTTGAGCCCGTACTTGGAGGCGCT TACCCAATTGATGATGAATGGGTTCTTGCGGACGTGAACGTGAAGAAATA A back to topprotein sequence of Gcaud2325.t1 >Gcaud2325.t1 ID=Gcaud2325.t1|Name=Gcaud2325.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=851bp
XLPPLPEDPLDIDEHAAFRPYDSMMFNFKVSDVDGGNLLKWYGGVYGGMA TKAVGLVSGEGVLAGHAKDANCRVVWKSTTPPPEVFLNPETPKSASSASA LVAATSSKDAYKDRQKGNSGSGQAAKADEGVAPASNRDQRSPVPQSGFLG GGKYRGLVYIKLGDPLEARRVKVRTIVNEFDARRAGWSDDQLQDILRHTP LLEAAADTYFKGVMFQRPILPPGATTMPRTPRMELLGVDGALAVRKLSLN DVAFPEIMTGSFSFSVSDFSLSLKERDAKTGKASESKNGTQLSNGEAHRS IDELTLSASLKGNAFLRLRLGSTEADADISKNEQGDIVAMVSSKNLDIHS FVGSGSEFFSGEAVRGTIDMNMGVNLNSRTGRGRIHIRNPSLGRLAFTSV GGEVLWRDQNVFLRKGSLKYRRSEYRVNAGYELPLEQGSDFKWNMNVNVQ KANVRDIAQLVLSGNAVARAMQSPVNSAEQSRITHPNGPLWIQRLSQSHE SGFETSVESWKVPTDVPFAEQVAYYRRMMKELDAPPKPKVRKKRYIRTRD APLTLADLRGDVTGIISMKYDSRLGEISSSPSPAGVLLQAALDQLTRTSF SFRLVGADWMIGDIPIDNVQTLGSFEEGVLDIGTTLFQNQEQFGAEVDCR LTSAGSLQASAMLDNVPAGLMNRYVQAPVDIDGTCSGRLQVEGNITNPRA LGRMVWTNASLNGKQVRGAKTDLAFVNGRCLLNVNARIGGSPRGVPEQSD EERLSSLFWNDSVIAALQDLATRTGAKFEGQPEASAKQVDAKREDEEAVS VLVSAPVRFYVRRYLQRRTPSTFWSLLEPVLGGAYPIDDEWVLADVNVKK * back to topmRNA from alignment at NODE_3311_length_3658_cov_4.022989:2..2552+ Legend: CDSpolypeptideexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2325.t1 ID=Gcaud2325.t1|Name=Gcaud2325.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2551bp|location=Sequence derived from alignment at NODE_3311_length_3658_cov_4.022989:2..2552+ (Gracilaria caudata M_176_S67 male) TCTCCCGCCTCTGCCAGAAGATCCGCTGGACATCGACGAGCATGCAGCAT
TTCGTCCGTACGACTCCATGATGTTTAACTTCAAGGTATCGGACGTTGAT
GGTGGTAATCTCTTGAAATGGTATGGAGGGGTATACGGCGGAATGGCTAC
AAAAGCTGTGGGACTGGTGAGCGGCGAAGGAGTGCTGGCCGGACATGCAA
AAGACGCAAACTGTCGGGTAGTATGGAAGTCCACAACCCCCCCACCTGAA
GTGTTTCTGAATCCAGAGACCCCCAAATCCGCCTCTAGTGCATCAGCATT
AGTTGCTGCCACCAGTTCGAAAGATGCTTACAAGGACAGACAGAAGGGGA
ACTCAGGCTCAGGTCAAGCCGCAAAGGCAGATGAAGGTGTGGCACCTGCT
AGCAATCGTGATCAAAGGTCCCCAGTTCCGCAATCTGGCTTTCTTGGAGG
GGGCAAATATCGCGGGCTTGTGTACATCAAGCTTGGGGACCCTCTAGAAG
CAAGACGAGTTAAAGTGCGAACAATTGTGAATGAATTTGACGCCCGCCGA
GCGGGTTGGTCCGACGACCAACTTCAAGATATACTCCGGCACACTCCGCT
TCTTGAAGCTGCGGCAGATACGTACTTCAAAGGAGTGATGTTTCAGAGAC
CCATTCTCCCCCCGGGTGCCACGACCATGCCACGCACACCGCGTATGGAA
CTGCTCGGAGTTGACGGTGCGCTTGCAGTGCGGAAGCTTTCACTGAATGA
CGTTGCGTTTCCAGAGATAATGACGGGTTCTTTCTCGTTCAGTGTTTCGG
ACTTTTCCCTTTCCCTCAAGGAAAGGGATGCAAAGACCGGGAAAGCATCA
GAGAGTAAGAATGGAACACAGTTATCGAATGGAGAGGCTCACAGAAGCAT
AGATGAACTCACATTGTCCGCATCTTTGAAAGGAAACGCTTTCCTTCGAT
TGCGTCTTGGATCTACTGAAGCAGACGCTGACATATCGAAAAATGAGCAA
GGAGACATAGTTGCGATGGTGAGCAGCAAAAACTTGGACATTCACAGCTT
TGTGGGGAGCGGTAGTGAGTTTTTCAGTGGTGAAGCCGTTCGAGGAACGA
TAGATATGAACATGGGTGTGAATCTGAACAGCCGAACGGGAAGAGGTCGG
ATCCACATTCGAAACCCTTCTCTTGGAAGGCTGGCGTTTACGTCAGTAGG
TGGCGAAGTGCTTTGGCGTGATCAGAATGTCTTCTTACGAAAAGGGAGTC
TGAAGTATCGTCGTTCTGAATACAGGGTGAACGCCGGGTATGAGCTACCG
CTGGAACAAGGAAGTGACTTCAAGTGGAATATGAACGTCAACGTTCAGAA
GGCCAATGTTAGGGATATTGCTCAGCTTGTTCTTTCCGGAAATGCGGTGG
CTCGCGCGATGCAATCCCCCGTGAACAGCGCAGAGCAAAGTCGCATCACC
CACCCAAACGGACCTTTGTGGATCCAGAGGTTGTCACAGTCCCACGAGTC
CGGGTTCGAAACATCTGTTGAATCTTGGAAAGTTCCTACAGATGTTCCTT
TCGCTGAACAAGTGGCGTACTATCGCCGGATGATGAAGGAACTGGATGCA
CCTCCAAAGCCGAAAGTTCGAAAGAAACGATACATCAGAACTCGAGACGC
CCCACTGACATTGGCTGACCTGCGTGGAGATGTGACAGGAATCATTTCTA
TGAAGTACGATTCGCGGCTGGGGGAAATCAGTTCGAGCCCTTCGCCAGCG
GGGGTGCTGCTCCAGGCCGCTCTTGATCAGTTAACAAGGACGTCTTTCTC
ATTCAGACTGGTTGGCGCGGACTGGATGATTGGTGATATTCCGATTGACA
ACGTGCAGACGTTGGGATCGTTTGAGGAAGGGGTACTGGACATTGGAACC
ACACTGTTCCAAAATCAAGAACAGTTTGGAGCTGAAGTAGATTGTCGACT
AACAAGCGCTGGATCCTTACAAGCTTCTGCAATGCTGGACAATGTTCCGG
CGGGCTTGATGAATCGATACGTCCAAGCGCCCGTTGACATTGACGGGACG
TGTAGTGGTCGACTTCAGGTGGAGGGGAACATTACGAACCCACGAGCTCT
TGGTCGCATGGTGTGGACTAATGCATCACTGAATGGCAAGCAGGTTAGAG
GGGCCAAAACAGATCTGGCATTCGTGAACGGCCGATGTCTTCTGAACGTG
AACGCCAGAATCGGCGGATCACCCAGGGGCGTCCCAGAACAGAGTGACGA
AGAAAGACTGAGTAGCTTGTTCTGGAATGATAGCGTGATCGCAGCGCTGC
AGGATTTGGCTACTAGAACGGGTGCCAAGTTTGAAGGACAGCCGGAGGCG
TCTGCAAAGCAGGTGGACGCAAAGCGAGAGGATGAAGAAGCAGTGTCCGT
GCTTGTGAGTGCTCCAGTGCGATTCTATGTACGTCGATATCTGCAAAGGA
GAACTCCAAGCACTTTCTGGTCGTTGCTTGAGCCCGTACTTGGAGGCGCT
TACCCAATTGATGATGAATGGGTTCTTGCGGACGTGAACGTGAAGAAATA
A back to topCoding sequence (CDS) from alignment at NODE_3311_length_3658_cov_4.022989:2..2552+ >Gcaud2325.t1 ID=Gcaud2325.t1|Name=Gcaud2325.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2551bp|location=Sequence derived from alignment at NODE_3311_length_3658_cov_4.022989:2..2552+ (Gracilaria caudata M_176_S67 male) TCTCCCGCCTCTGCCAGAAGATCCGCTGGACATCGACGAGCATGCAGCAT TTCGTCCGTACGACTCCATGATGTTTAACTTCAAGGTATCGGACGTTGAT GGTGGTAATCTCTTGAAATGGTATGGAGGGGTATACGGCGGAATGGCTAC AAAAGCTGTGGGACTGGTGAGCGGCGAAGGAGTGCTGGCCGGACATGCAA AAGACGCAAACTGTCGGGTAGTATGGAAGTCCACAACCCCCCCACCTGAA GTGTTTCTGAATCCAGAGACCCCCAAATCCGCCTCTAGTGCATCAGCATT AGTTGCTGCCACCAGTTCGAAAGATGCTTACAAGGACAGACAGAAGGGGA ACTCAGGCTCAGGTCAAGCCGCAAAGGCAGATGAAGGTGTGGCACCTGCT AGCAATCGTGATCAAAGGTCCCCAGTTCCGCAATCTGGCTTTCTTGGAGG GGGCAAATATCGCGGGCTTGTGTACATCAAGCTTGGGGACCCTCTAGAAG CAAGACGAGTTAAAGTGCGAACAATTGTGAATGAATTTGACGCCCGCCGA GCGGGTTGGTCCGACGACCAACTTCAAGATATACTCCGGCACACTCCGCT TCTTGAAGCTGCGGCAGATACGTACTTCAAAGGAGTGATGTTTCAGAGAC CCATTCTCCCCCCGGGTGCCACGACCATGCCACGCACACCGCGTATGGAA CTGCTCGGAGTTGACGGTGCGCTTGCAGTGCGGAAGCTTTCACTGAATGA CGTTGCGTTTCCAGAGATAATGACGGGTTCTTTCTCGTTCAGTGTTTCGG ACTTTTCCCTTTCCCTCAAGGAAAGGGATGCAAAGACCGGGAAAGCATCA GAGAGTAAGAATGGAACACAGTTATCGAATGGAGAGGCTCACAGAAGCAT AGATGAACTCACATTGTCCGCATCTTTGAAAGGAAACGCTTTCCTTCGAT TGCGTCTTGGATCTACTGAAGCAGACGCTGACATATCGAAAAATGAGCAA GGAGACATAGTTGCGATGGTGAGCAGCAAAAACTTGGACATTCACAGCTT TGTGGGGAGCGGTAGTGAGTTTTTCAGTGGTGAAGCCGTTCGAGGAACGA TAGATATGAACATGGGTGTGAATCTGAACAGCCGAACGGGAAGAGGTCGG ATCCACATTCGAAACCCTTCTCTTGGAAGGCTGGCGTTTACGTCAGTAGG TGGCGAAGTGCTTTGGCGTGATCAGAATGTCTTCTTACGAAAAGGGAGTC TGAAGTATCGTCGTTCTGAATACAGGGTGAACGCCGGGTATGAGCTACCG CTGGAACAAGGAAGTGACTTCAAGTGGAATATGAACGTCAACGTTCAGAA GGCCAATGTTAGGGATATTGCTCAGCTTGTTCTTTCCGGAAATGCGGTGG CTCGCGCGATGCAATCCCCCGTGAACAGCGCAGAGCAAAGTCGCATCACC CACCCAAACGGACCTTTGTGGATCCAGAGGTTGTCACAGTCCCACGAGTC CGGGTTCGAAACATCTGTTGAATCTTGGAAAGTTCCTACAGATGTTCCTT TCGCTGAACAAGTGGCGTACTATCGCCGGATGATGAAGGAACTGGATGCA CCTCCAAAGCCGAAAGTTCGAAAGAAACGATACATCAGAACTCGAGACGC CCCACTGACATTGGCTGACCTGCGTGGAGATGTGACAGGAATCATTTCTA TGAAGTACGATTCGCGGCTGGGGGAAATCAGTTCGAGCCCTTCGCCAGCG GGGGTGCTGCTCCAGGCCGCTCTTGATCAGTTAACAAGGACGTCTTTCTC ATTCAGACTGGTTGGCGCGGACTGGATGATTGGTGATATTCCGATTGACA ACGTGCAGACGTTGGGATCGTTTGAGGAAGGGGTACTGGACATTGGAACC ACACTGTTCCAAAATCAAGAACAGTTTGGAGCTGAAGTAGATTGTCGACT AACAAGCGCTGGATCCTTACAAGCTTCTGCAATGCTGGACAATGTTCCGG CGGGCTTGATGAATCGATACGTCCAAGCGCCCGTTGACATTGACGGGACG TGTAGTGGTCGACTTCAGGTGGAGGGGAACATTACGAACCCACGAGCTCT TGGTCGCATGGTGTGGACTAATGCATCACTGAATGGCAAGCAGGTTAGAG GGGCCAAAACAGATCTGGCATTCGTGAACGGCCGATGTCTTCTGAACGTG AACGCCAGAATCGGCGGATCACCCAGGGGCGTCCCAGAACAGAGTGACGA AGAAAGACTGAGTAGCTTGTTCTGGAATGATAGCGTGATCGCAGCGCTGC AGGATTTGGCTACTAGAACGGGTGCCAAGTTTGAAGGACAGCCGGAGGCG TCTGCAAAGCAGGTGGACGCAAAGCGAGAGGATGAAGAAGCAGTGTCCGT GCTTGTGAGTGCTCCAGTGCGATTCTATGTACGTCGATATCTGCAAAGGA GAACTCCAAGCACTTTCTGGTCGTTGCTTGAGCCCGTACTTGGAGGCGCT TACCCAATTGATGATGAATGGGTTCTTGCGGACGTGAACGTGAAGAAATA A back to top
|