Gcaud232.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud232.t1
Unique Name	Gcaud232.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1244_length_12191_cov_4.451901	contig	NODE_1244_length_12191_cov_4.451901:8284..9174 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud232	Gcaud232	Gracilaria caudata M_176_S67 male	gene	NODE_1244_length_12191_cov_4.451901 8284..9174 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud232.t1	Gcaud232.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1244_length_12191_cov_4.451901 8284..9174 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud232.t1.stop1	Gcaud232.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1244_length_12191_cov_4.451901 8284..8286 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud232.t1.CDS1	Gcaud232.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1244_length_12191_cov_4.451901 8284..8442 -
Gcaud232.t1.CDS2	Gcaud232.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1244_length_12191_cov_4.451901 8536..9174 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud232.t1.exon1	Gcaud232.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1244_length_12191_cov_4.451901 8284..8442 -
Gcaud232.t1.exon2	Gcaud232.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1244_length_12191_cov_4.451901 8536..9174 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud232.t1.intron1	Gcaud232.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1244_length_12191_cov_4.451901 8443..8535 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud232.t1.start1	Gcaud232.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1244_length_12191_cov_4.451901 9172..9174 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1244_length_12191_cov_4.451901:8284..9174-
coding sequence from alignment at NODE_1244_length_12191_cov_4.451901:8284..9174-

mRNA sequence

>Gcaud232.t1 ID=Gcaud232.t1|Name=Gcaud232.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=266bp
MERDRLSISSYRLEPNRGSESVQEEYGFHLAGMPKESGKEQRMQFVSQPT
NIASLNSSIRASFESIRGVIDWAVNDFERRCHGCGVHLDLEVQNAGPSNA
RFPYTSYNTVIVPSGLYLDLKAAKHEVGHAIRYICHGDIEHFKEEASKFN
YLRSHSCKRKDGKEFSFNEGWAAFWAGQCPDNNGFSDEIEGDVAHSLREL
QNRCGSSDSAMIQLSFQAQTDFSTSALPTFGSFYEILRAQSRALTKEYAE
NNVSIRELKVSAFVE*

spliced messenger RNA

>Gcaud232.t1 ID=Gcaud232.t1|Name=Gcaud232.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_1244_length_12191_cov_4.451901:8284..9174- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGAGATAGGCTGTCAATTTCATCTTACCGCTTGGAGCCCAACCG
TGGTTCGGAAAGCGTGCAAGAAGAATATGGGTTCCATCTGGCCGGAATGC
CGAAGGAAAGCGGCAAGGAGCAGCGGATGCAATTCGTCTCTCAGCCTACG
AACATCGCCAGTTTGAATAGTAGTATCAGAGCGTCTTTTGAATCCATTCG
AGGAGTTATTGATTGGGCAGTGAACGATTTCGAGAGAAGATGCCATGGTT
GTGGAGTACATCTTGATCTTGAGGTCCAAAATGCAGGTCCTTCCAATGCC
AGATTTCCGTATACTAGTTATAATACGGTGATTGTGCCCAGCGGGCTGTA
TTTAGATTTGAAAGCAGCGAAGCACGAAGTTGGCCATGCAATCCGATATA
TCTGTCATGGAGACATTGAGCATTTCAAAGAAGAAGCCTCAAAATTCAAC
TATCTTCGCTCTCACAGCTGCAAACGAAAAGATGGAAAAGAATTTTCGTT
TAATGAGGGCTGGGCAGCTTTCTGGGCTGGCCAATGTCCTGATAACAACG
GATTTAGCGATGAGATCGAAGGAGATGTTGCTCATTCTCTGAGAGAACTT
CAAAATCGCTGTGGTTCATCCGATTCCGCTATGATCCAGTTATCTTTTCA
AGCTCAGACAGATTTTTCAACTTCTGCGCTGCCGACATTTGGTTCGTTTT
ACGAGATTCTGAGAGCACAGAGTCGCGCTCTTACTAAAGAGTATGCTGAA
AATAATGTTTCTATTAGAGAGTTGAAGGTCAGCGCATTCGTCGAATAG

protein sequence of Gcaud232.t1

>Gcaud232.t1 ID=Gcaud232.t1|Name=Gcaud232.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=266bp
MERDRLSISSYRLEPNRGSESVQEEYGFHLAGMPKESGKEQRMQFVSQPT
NIASLNSSIRASFESIRGVIDWAVNDFERRCHGCGVHLDLEVQNAGPSNA
RFPYTSYNTVIVPSGLYLDLKAAKHEVGHAIRYICHGDIEHFKEEASKFN
YLRSHSCKRKDGKEFSFNEGWAAFWAGQCPDNNGFSDEIEGDVAHSLREL
QNRCGSSDSAMIQLSFQAQTDFSTSALPTFGSFYEILRAQSRALTKEYAE
NNVSIRELKVSAFVE*

mRNA from alignment at NODE_1244_length_12191_cov_4.451901:8284..9174-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud232.t1 ID=Gcaud232.t1|Name=Gcaud232.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=891bp|location=Sequence derived from alignment at NODE_1244_length_12191_cov_4.451901:8284..9174- (Gracilaria caudata M_176_S67 male)
ATGGAAAGAGATAGGCTGTCAATTTCATCTTACCGCTTGGAGCCCAACCG
TGGTTCGGAAAGCGTGCAAGAAGAATATGGGTTCCATCTGGCCGGAATGC
CGAAGGAAAGCGGCAAGGAGCAGCGGATGCAATTCGTCTCTCAGCCTACG
AACATCGCCAGTTTGAATAGTAGTATCAGAGCGTCTTTTGAATCCATTCG
AGGAGTTATTGATTGGGCAGTGAACGATTTCGAGAGAAGATGCCATGGTT
GTGGAGTACATCTTGATCTTGAGGTCCAAAATGCAGGTCCTTCCAATGCC
AGATTTCCGTATACTAGTTATAATACGGTGATTGTGCCCAGCGGGCTGTA
TTTAGATTTGAAAGCAGCGAAGCACGAAGTTGGCCATGCAATCCGATATA
TCTGTCATGGAGACATTGAGCATTTCAAAGAAGAAGCCTCAAAATTCAAC
TATCTTCGCTCTCACAGCTGCAAACGAAAAGATGGAAAAGAATTTTCGTT
TAATGAGGGCTGGGCAGCTTTCTGGGCTGGCCAATGTCCTGATAACAACG
GATTTAGCGATGAGATCGAAGGAGATGTTGCTCATTCTCTGAGAGAACTT
CAAAATCGCTGTGGTTCATCCGATTCCGCTATGATCCAGGTATTGTGCAG
CAACAGATATTCAATTCACACCTTGTGGGAATACAACGACGCTCACAAGA
GGATGCATGGCTGCTCTTTATAACGGATATAGTTATCTTTTCAAGCTCAG
ACAGATTTTTCAACTTCTGCGCTGCCGACATTTGGTTCGTTTTACGAGAT
TCTGAGAGCACAGAGTCGCGCTCTTACTAAAGAGTATGCTGAAAATAATG
TTTCTATTAGAGAGTTGAAGGTCAGCGCATTCGTCGAATAG

Coding sequence (CDS) from alignment at NODE_1244_length_12191_cov_4.451901:8284..9174-

>Gcaud232.t1 ID=Gcaud232.t1|Name=Gcaud232.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=798bp|location=Sequence derived from alignment at NODE_1244_length_12191_cov_4.451901:8284..9174- (Gracilaria caudata M_176_S67 male)
ATGGAAAGAGATAGGCTGTCAATTTCATCTTACCGCTTGGAGCCCAACCG
TGGTTCGGAAAGCGTGCAAGAAGAATATGGGTTCCATCTGGCCGGAATGC
CGAAGGAAAGCGGCAAGGAGCAGCGGATGCAATTCGTCTCTCAGCCTACG
AACATCGCCAGTTTGAATAGTAGTATCAGAGCGTCTTTTGAATCCATTCG
AGGAGTTATTGATTGGGCAGTGAACGATTTCGAGAGAAGATGCCATGGTT
GTGGAGTACATCTTGATCTTGAGGTCCAAAATGCAGGTCCTTCCAATGCC
AGATTTCCGTATACTAGTTATAATACGGTGATTGTGCCCAGCGGGCTGTA
TTTAGATTTGAAAGCAGCGAAGCACGAAGTTGGCCATGCAATCCGATATA
TCTGTCATGGAGACATTGAGCATTTCAAAGAAGAAGCCTCAAAATTCAAC
TATCTTCGCTCTCACAGCTGCAAACGAAAAGATGGAAAAGAATTTTCGTT
TAATGAGGGCTGGGCAGCTTTCTGGGCTGGCCAATGTCCTGATAACAACG
GATTTAGCGATGAGATCGAAGGAGATGTTGCTCATTCTCTGAGAGAACTT
CAAAATCGCTGTGGTTCATCCGATTCCGCTATGATCCAGTTATCTTTTCA
AGCTCAGACAGATTTTTCAACTTCTGCGCTGCCGACATTTGGTTCGTTTT
ACGAGATTCTGAGAGCACAGAGTCGCGCTCTTACTAAAGAGTATGCTGAA
AATAATGTTTCTATTAGAGAGTTGAAGGTCAGCGCATTCGTCGAATAG