Gcaud2309.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2309.t1
Unique Name	Gcaud2309.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	612

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_838_length_17196_cov_5.011166	contig	NODE_838_length_17196_cov_5.011166:14169..16004 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	324602.Caur_0312
PFAMs	Peripla_BP_2
Max annot lvl	32061\|Chloroflexia
KEGG ko	ko:K02016
KEGG TC	3.A.1.14
KEGG Pathway	ko02010,map02010
KEGG Module	M00240
Evalue	1.74e-25
EggNOG OGs	COG0614@1\|root,COG0614@2\|Bacteria,2G9GT@200795\|Chloroflexi,375RH@32061\|Chloroflexia
Description	PFAM periplasmic binding protein
COG category	P
BRITE	ko00000,ko00001,ko00002,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2309	Gcaud2309	Gracilaria caudata M_176_S67 male	gene	NODE_838_length_17196_cov_5.011166 14169..16004 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2309.t1.start1	Gcaud2309.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_838_length_17196_cov_5.011166 14169..14171 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2309.t1.CDS1	Gcaud2309.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_838_length_17196_cov_5.011166 14169..16004 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2309.t1.exon1	Gcaud2309.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_838_length_17196_cov_5.011166 14169..16004 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2309.t1.stop1	Gcaud2309.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_838_length_17196_cov_5.011166 16002..16004 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2309.t1	Gcaud2309.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_838_length_17196_cov_5.011166 14169..16004 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_838_length_17196_cov_5.011166:14169..16004+
coding sequence from alignment at NODE_838_length_17196_cov_5.011166:14169..16004+

mRNA sequence

>Gcaud2309.t1 ID=Gcaud2309.t1|Name=Gcaud2309.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=612bp
LVVLLVLVVSVSAQSRDSNCRNPVESCDPRTDYFPESARITIEFASTIVE
VSYSNTHVDITASGANRSHILPYRFIRCGCPRPPGSESRIVHFTGPSSLH
VTESPSLALLEALDPSLEALSYVNTVATVFSTRIREKVLVTNEVQEVRGL
DGVDFARLQGDSELSASIIGSFEFETYLEKTGDVPFLVVPDPHEPSPLGR
AELVKLVGVFLGAAEEANSLFANIVTEYQDASRRAREAARRPSVLLNRPF
KVETVDLSVPVDDLYTWFMPHREQYITDFLEDANADYVHERVVNDATLEF
PFSRVIEDFRFARFHLFVGHSPSIPSRDTLEEYMNALIDPNVPDPRVREA
MATINAVKCDNVWSNEKRVTEDGSSNDFFESAIINPDEILKDLVSILHPS
VDFGDREMFYMDHFAAATDEFTQDCPYNDFAGPPPSSKIYVDNEFTVAEL
NRFDIERAWESDIQPELKALDFDAEYDILFEPENRANESSAEIQTRFIIR
ALTDPENNAEISETTEIREALTRSLGRDVGQLNSDSSIIPIDDGLSSAAI
AIIVIASIVVSASAVALIFRLLQRQRGKAFELQVLPRAQVWGPPADEIGR
TGKDLEAPATE*

spliced messenger RNA

>Gcaud2309.t1 ID=Gcaud2309.t1|Name=Gcaud2309.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1836bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:14169..16004+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGTCGTTCTACTCGTTTTGGTTGTTTCTGTCTCTGCACAGTCACGAGA
CTCCAACTGCCGTAATCCTGTGGAATCGTGTGACCCAAGGACAGATTACT
TCCCGGAATCGGCAAGAATCACCATCGAATTTGCGAGCACAATTGTTGAA
GTCTCATACTCGAACACACATGTCGATATCACAGCGTCAGGCGCTAATCG
AAGCCATATACTTCCCTATCGTTTTATTCGATGTGGGTGCCCCCGTCCAC
CTGGCTCTGAAAGCCGTATCGTACACTTTACAGGCCCTTCATCTCTACAT
GTCACCGAGTCTCCTTCGCTGGCTCTATTGGAGGCCCTTGATCCATCCTT
GGAAGCTCTGTCCTATGTCAACACTGTAGCCACTGTATTTTCTACTCGAA
TTCGTGAAAAGGTTCTTGTGACCAACGAAGTACAAGAAGTGAGAGGTCTA
GATGGAGTTGACTTTGCAAGGCTCCAAGGAGACTCAGAGCTGTCGGCGAG
CATTATCGGCTCTTTTGAATTCGAAACATATCTCGAGAAGACTGGAGATG
TGCCATTTCTCGTTGTTCCTGATCCACACGAACCGTCGCCGCTTGGGAGG
GCTGAACTCGTCAAACTGGTTGGTGTGTTCCTGGGAGCAGCAGAAGAAGC
GAATTCTTTGTTTGCCAATATTGTGACAGAATATCAGGATGCAAGCCGAA
GAGCACGCGAGGCTGCTAGACGCCCGTCTGTGCTCCTGAACCGGCCATTT
AAAGTTGAGACCGTTGATCTTTCGGTACCTGTTGATGATCTTTATACCTG
GTTCATGCCGCATCGCGAACAGTACATTACCGACTTTCTTGAGGACGCAA
ATGCTGACTACGTGCATGAGAGAGTGGTAAACGACGCCACCCTAGAATTC
CCGTTTTCAAGAGTTATAGAAGACTTTAGGTTCGCCCGCTTTCACCTTTT
CGTGGGCCATTCTCCTTCCATTCCGAGCCGAGATACGCTGGAGGAATATA
TGAATGCTCTCATTGATCCAAACGTTCCCGACCCGAGAGTAAGAGAAGCG
ATGGCCACAATCAATGCCGTCAAATGTGATAATGTGTGGAGCAACGAAAA
GCGGGTTACAGAAGATGGATCTTCAAATGACTTCTTCGAGTCAGCGATTA
TTAACCCTGATGAAATCTTAAAGGATTTAGTTTCCATTCTTCATCCTTCT
GTGGATTTTGGAGATCGGGAAATGTTCTACATGGATCATTTCGCAGCTGC
CACGGACGAATTTACACAAGATTGTCCGTATAACGATTTTGCTGGACCTC
CTCCAAGCTCAAAGATTTATGTCGATAACGAGTTTACAGTTGCTGAACTG
AATCGATTTGACATCGAACGTGCATGGGAGAGCGACATTCAACCAGAGTT
GAAGGCTCTCGATTTTGACGCTGAGTATGACATCTTGTTTGAGCCTGAGA
ACCGGGCCAACGAATCGAGCGCCGAGATACAAACCAGGTTCATCATAAGA
GCTCTCACTGACCCGGAAAATAATGCCGAAATCAGCGAAACCACGGAAAT
CAGAGAAGCTCTAACACGTAGCCTCGGTAGAGACGTTGGACAACTGAATT
CTGACAGTTCCATAATACCCATTGATGATGGCCTTAGCTCGGCGGCGATT
GCCATAATTGTCATCGCAAGTATCGTCGTCAGCGCTTCGGCAGTTGCGCT
CATTTTCAGGCTTCTCCAGAGACAAAGAGGGAAGGCGTTCGAACTTCAAG
TACTGCCACGAGCTCAGGTTTGGGGCCCGCCTGCTGACGAAATTGGGAGA
ACAGGTAAAGACTTGGAGGCACCTGCGACCGAGTAA

protein sequence of Gcaud2309.t1

>Gcaud2309.t1 ID=Gcaud2309.t1|Name=Gcaud2309.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=612bp
LVVLLVLVVSVSAQSRDSNCRNPVESCDPRTDYFPESARITIEFASTIVE
VSYSNTHVDITASGANRSHILPYRFIRCGCPRPPGSESRIVHFTGPSSLH
VTESPSLALLEALDPSLEALSYVNTVATVFSTRIREKVLVTNEVQEVRGL
DGVDFARLQGDSELSASIIGSFEFETYLEKTGDVPFLVVPDPHEPSPLGR
AELVKLVGVFLGAAEEANSLFANIVTEYQDASRRAREAARRPSVLLNRPF
KVETVDLSVPVDDLYTWFMPHREQYITDFLEDANADYVHERVVNDATLEF
PFSRVIEDFRFARFHLFVGHSPSIPSRDTLEEYMNALIDPNVPDPRVREA
MATINAVKCDNVWSNEKRVTEDGSSNDFFESAIINPDEILKDLVSILHPS
VDFGDREMFYMDHFAAATDEFTQDCPYNDFAGPPPSSKIYVDNEFTVAEL
NRFDIERAWESDIQPELKALDFDAEYDILFEPENRANESSAEIQTRFIIR
ALTDPENNAEISETTEIREALTRSLGRDVGQLNSDSSIIPIDDGLSSAAI
AIIVIASIVVSASAVALIFRLLQRQRGKAFELQVLPRAQVWGPPADEIGR
TGKDLEAPATE*

mRNA from alignment at NODE_838_length_17196_cov_5.011166:14169..16004+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2309.t1 ID=Gcaud2309.t1|Name=Gcaud2309.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1836bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:14169..16004+ (Gracilaria caudata M_176_S67 male)
TTGGTCGTTCTACTCGTTTTGGTTGTTTCTGTCTCTGCACAGTCACGAGA
CTCCAACTGCCGTAATCCTGTGGAATCGTGTGACCCAAGGACAGATTACT
TCCCGGAATCGGCAAGAATCACCATCGAATTTGCGAGCACAATTGTTGAA
GTCTCATACTCGAACACACATGTCGATATCACAGCGTCAGGCGCTAATCG
AAGCCATATACTTCCCTATCGTTTTATTCGATGTGGGTGCCCCCGTCCAC
CTGGCTCTGAAAGCCGTATCGTACACTTTACAGGCCCTTCATCTCTACAT
GTCACCGAGTCTCCTTCGCTGGCTCTATTGGAGGCCCTTGATCCATCCTT
GGAAGCTCTGTCCTATGTCAACACTGTAGCCACTGTATTTTCTACTCGAA
TTCGTGAAAAGGTTCTTGTGACCAACGAAGTACAAGAAGTGAGAGGTCTA
GATGGAGTTGACTTTGCAAGGCTCCAAGGAGACTCAGAGCTGTCGGCGAG
CATTATCGGCTCTTTTGAATTCGAAACATATCTCGAGAAGACTGGAGATG
TGCCATTTCTCGTTGTTCCTGATCCACACGAACCGTCGCCGCTTGGGAGG
GCTGAACTCGTCAAACTGGTTGGTGTGTTCCTGGGAGCAGCAGAAGAAGC
GAATTCTTTGTTTGCCAATATTGTGACAGAATATCAGGATGCAAGCCGAA
GAGCACGCGAGGCTGCTAGACGCCCGTCTGTGCTCCTGAACCGGCCATTT
AAAGTTGAGACCGTTGATCTTTCGGTACCTGTTGATGATCTTTATACCTG
GTTCATGCCGCATCGCGAACAGTACATTACCGACTTTCTTGAGGACGCAA
ATGCTGACTACGTGCATGAGAGAGTGGTAAACGACGCCACCCTAGAATTC
CCGTTTTCAAGAGTTATAGAAGACTTTAGGTTCGCCCGCTTTCACCTTTT
CGTGGGCCATTCTCCTTCCATTCCGAGCCGAGATACGCTGGAGGAATATA
TGAATGCTCTCATTGATCCAAACGTTCCCGACCCGAGAGTAAGAGAAGCG
ATGGCCACAATCAATGCCGTCAAATGTGATAATGTGTGGAGCAACGAAAA
GCGGGTTACAGAAGATGGATCTTCAAATGACTTCTTCGAGTCAGCGATTA
TTAACCCTGATGAAATCTTAAAGGATTTAGTTTCCATTCTTCATCCTTCT
GTGGATTTTGGAGATCGGGAAATGTTCTACATGGATCATTTCGCAGCTGC
CACGGACGAATTTACACAAGATTGTCCGTATAACGATTTTGCTGGACCTC
CTCCAAGCTCAAAGATTTATGTCGATAACGAGTTTACAGTTGCTGAACTG
AATCGATTTGACATCGAACGTGCATGGGAGAGCGACATTCAACCAGAGTT
GAAGGCTCTCGATTTTGACGCTGAGTATGACATCTTGTTTGAGCCTGAGA
ACCGGGCCAACGAATCGAGCGCCGAGATACAAACCAGGTTCATCATAAGA
GCTCTCACTGACCCGGAAAATAATGCCGAAATCAGCGAAACCACGGAAAT
CAGAGAAGCTCTAACACGTAGCCTCGGTAGAGACGTTGGACAACTGAATT
CTGACAGTTCCATAATACCCATTGATGATGGCCTTAGCTCGGCGGCGATT
GCCATAATTGTCATCGCAAGTATCGTCGTCAGCGCTTCGGCAGTTGCGCT
CATTTTCAGGCTTCTCCAGAGACAAAGAGGGAAGGCGTTCGAACTTCAAG
TACTGCCACGAGCTCAGGTTTGGGGCCCGCCTGCTGACGAAATTGGGAGA
ACAGGTAAAGACTTGGAGGCACCTGCGACCGAGTAA

Coding sequence (CDS) from alignment at NODE_838_length_17196_cov_5.011166:14169..16004+

>Gcaud2309.t1 ID=Gcaud2309.t1|Name=Gcaud2309.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1836bp|location=Sequence derived from alignment at NODE_838_length_17196_cov_5.011166:14169..16004+ (Gracilaria caudata M_176_S67 male)
TTGGTCGTTCTACTCGTTTTGGTTGTTTCTGTCTCTGCACAGTCACGAGA
CTCCAACTGCCGTAATCCTGTGGAATCGTGTGACCCAAGGACAGATTACT
TCCCGGAATCGGCAAGAATCACCATCGAATTTGCGAGCACAATTGTTGAA
GTCTCATACTCGAACACACATGTCGATATCACAGCGTCAGGCGCTAATCG
AAGCCATATACTTCCCTATCGTTTTATTCGATGTGGGTGCCCCCGTCCAC
CTGGCTCTGAAAGCCGTATCGTACACTTTACAGGCCCTTCATCTCTACAT
GTCACCGAGTCTCCTTCGCTGGCTCTATTGGAGGCCCTTGATCCATCCTT
GGAAGCTCTGTCCTATGTCAACACTGTAGCCACTGTATTTTCTACTCGAA
TTCGTGAAAAGGTTCTTGTGACCAACGAAGTACAAGAAGTGAGAGGTCTA
GATGGAGTTGACTTTGCAAGGCTCCAAGGAGACTCAGAGCTGTCGGCGAG
CATTATCGGCTCTTTTGAATTCGAAACATATCTCGAGAAGACTGGAGATG
TGCCATTTCTCGTTGTTCCTGATCCACACGAACCGTCGCCGCTTGGGAGG
GCTGAACTCGTCAAACTGGTTGGTGTGTTCCTGGGAGCAGCAGAAGAAGC
GAATTCTTTGTTTGCCAATATTGTGACAGAATATCAGGATGCAAGCCGAA
GAGCACGCGAGGCTGCTAGACGCCCGTCTGTGCTCCTGAACCGGCCATTT
AAAGTTGAGACCGTTGATCTTTCGGTACCTGTTGATGATCTTTATACCTG
GTTCATGCCGCATCGCGAACAGTACATTACCGACTTTCTTGAGGACGCAA
ATGCTGACTACGTGCATGAGAGAGTGGTAAACGACGCCACCCTAGAATTC
CCGTTTTCAAGAGTTATAGAAGACTTTAGGTTCGCCCGCTTTCACCTTTT
CGTGGGCCATTCTCCTTCCATTCCGAGCCGAGATACGCTGGAGGAATATA
TGAATGCTCTCATTGATCCAAACGTTCCCGACCCGAGAGTAAGAGAAGCG
ATGGCCACAATCAATGCCGTCAAATGTGATAATGTGTGGAGCAACGAAAA
GCGGGTTACAGAAGATGGATCTTCAAATGACTTCTTCGAGTCAGCGATTA
TTAACCCTGATGAAATCTTAAAGGATTTAGTTTCCATTCTTCATCCTTCT
GTGGATTTTGGAGATCGGGAAATGTTCTACATGGATCATTTCGCAGCTGC
CACGGACGAATTTACACAAGATTGTCCGTATAACGATTTTGCTGGACCTC
CTCCAAGCTCAAAGATTTATGTCGATAACGAGTTTACAGTTGCTGAACTG
AATCGATTTGACATCGAACGTGCATGGGAGAGCGACATTCAACCAGAGTT
GAAGGCTCTCGATTTTGACGCTGAGTATGACATCTTGTTTGAGCCTGAGA
ACCGGGCCAACGAATCGAGCGCCGAGATACAAACCAGGTTCATCATAAGA
GCTCTCACTGACCCGGAAAATAATGCCGAAATCAGCGAAACCACGGAAAT
CAGAGAAGCTCTAACACGTAGCCTCGGTAGAGACGTTGGACAACTGAATT
CTGACAGTTCCATAATACCCATTGATGATGGCCTTAGCTCGGCGGCGATT
GCCATAATTGTCATCGCAAGTATCGTCGTCAGCGCTTCGGCAGTTGCGCT
CATTTTCAGGCTTCTCCAGAGACAAAGAGGGAAGGCGTTCGAACTTCAAG
TACTGCCACGAGCTCAGGTTTGGGGCCCGCCTGCTGACGAAATTGGGAGA
ACAGGTAAAGACTTGGAGGCACCTGCGACCGAGTAA