Gcaud2295.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2295.t1
Unique Name	Gcaud2295.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	368

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_220_length_36054_cov_4.510163	contig	NODE_220_length_36054_cov_4.510163:29506..30609 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42345.XP_008781262.1
PFAMs	DUF760
Max annot lvl	35493\|Streptophyta
Evalue	1.5e-23
EggNOG OGs	28KAV@1\|root,2QSRQ@2759\|Eukaryota,37J3T@33090\|Viridiplantae,3GCI3@35493\|Streptophyta,3KV3J@4447\|Liliopsida
Description	Protein of unknown function (DUF760)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2295	Gcaud2295	Gracilaria caudata M_176_S67 male	gene	NODE_220_length_36054_cov_4.510163 29506..30609 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2295.t1.stop1	Gcaud2295.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_220_length_36054_cov_4.510163 29506..29508 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2295.t1.CDS1	Gcaud2295.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 29506..30609 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2295.t1.exon1	Gcaud2295.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 29506..30609 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2295.t1.start1	Gcaud2295.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_220_length_36054_cov_4.510163 30607..30609 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2295.t1	Gcaud2295.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_220_length_36054_cov_4.510163 29506..30609 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_220_length_36054_cov_4.510163:29506..30609-
coding sequence from alignment at NODE_220_length_36054_cov_4.510163:29506..30609-

mRNA sequence

>Gcaud2295.t1 ID=Gcaud2295.t1|Name=Gcaud2295.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=368bp
MPLHAVFIWSDDYSDDAADDADDADEDDTTEHEHDFFEISEDPWKRAHRS
MDHSQPSASSFASHHYARRQSDDDHHHDEHHSQHAQSSDDQNPLFAAIRR
NTQGPDDIDRLRQLASEGAAETFRDVVIGVLGNMPSDVYEVIVTTDRNGM
SRLMHSSLSTGYALRNAEFRMLLNENMNSFHRSQHERKRDDTSAVRDLFA
AEPSYMHNVPRRGKPDTSRIKGVVRLWDTEREAKQELTAAEYVAKLEAEN
ELLRDRLSATQLHGANRNQLMAFVRTLTPQKLTELQANSSDEVVGAFKSV
VKSVLGEINVAKVQMTYSTTRDYMAQLTFWCLLVGYTLRNLEKRMEMTKI
FENTEAYAESALSDSDN*

spliced messenger RNA

>Gcaud2295.t1 ID=Gcaud2295.t1|Name=Gcaud2295.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:29506..30609- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTGCATGCCGTTTTCATATGGAGCGATGACTATTCCGACGACGC
CGCAGATGACGCCGATGACGCCGATGAGGACGATACCACCGAACACGAAC
ACGACTTCTTCGAGATTTCAGAAGACCCTTGGAAACGCGCCCACCGCTCC
ATGGATCATTCGCAACCTAGCGCCTCTTCGTTTGCGTCACATCATTATGC
TAGACGACAGTCTGATGATGATCACCATCATGACGAGCACCATTCGCAAC
ATGCTCAGTCGTCTGACGATCAAAACCCGTTGTTTGCTGCCATTCGGAGG
AACACTCAAGGTCCGGATGATATTGATCGTCTGCGCCAGCTTGCTTCAGA
AGGCGCTGCCGAAACCTTTCGCGATGTAGTCATCGGTGTTTTGGGTAATA
TGCCGTCGGATGTATACGAGGTGATCGTAACCACCGATCGTAACGGTATG
TCACGCCTTATGCATAGCTCGTTGTCAACTGGATATGCACTGCGAAACGC
GGAGTTTCGTATGTTGCTCAACGAGAATATGAACTCTTTCCATCGCTCAC
AGCACGAAAGAAAACGCGACGACACCTCAGCTGTACGTGATTTGTTCGCG
GCTGAACCTTCGTACATGCACAACGTGCCGAGAAGAGGAAAGCCTGATAC
TAGTAGGATCAAGGGGGTGGTTAGATTGTGGGACACAGAACGCGAAGCGA
AACAGGAACTTACTGCTGCCGAATATGTGGCAAAGCTTGAAGCGGAGAAC
GAGTTATTGCGAGATCGTCTCTCCGCTACGCAGTTGCATGGCGCTAATCG
CAACCAGTTGATGGCGTTTGTGAGAACACTTACACCGCAAAAGCTCACAG
AGTTGCAAGCCAATTCGAGTGATGAGGTTGTGGGTGCCTTCAAGAGTGTT
GTGAAGAGCGTGCTTGGCGAAATCAATGTTGCGAAGGTGCAGATGACGTA
TTCAACAACCAGAGATTATATGGCGCAACTTACCTTTTGGTGCTTGCTTG
TCGGTTATACTCTGCGTAACCTCGAGAAGCGTATGGAAATGACCAAGATT
TTTGAGAATACTGAGGCGTACGCCGAGTCGGCTTTGAGTGACAGCGATAA
CTGA

protein sequence of Gcaud2295.t1

>Gcaud2295.t1 ID=Gcaud2295.t1|Name=Gcaud2295.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MPLHAVFIWSDDYSDDAADDADDADEDDTTEHEHDFFEISEDPWKRAHRS
MDHSQPSASSFASHHYARRQSDDDHHHDEHHSQHAQSSDDQNPLFAAIRR
NTQGPDDIDRLRQLASEGAAETFRDVVIGVLGNMPSDVYEVIVTTDRNGM
SRLMHSSLSTGYALRNAEFRMLLNENMNSFHRSQHERKRDDTSAVRDLFA
AEPSYMHNVPRRGKPDTSRIKGVVRLWDTEREAKQELTAAEYVAKLEAEN
ELLRDRLSATQLHGANRNQLMAFVRTLTPQKLTELQANSSDEVVGAFKSV
VKSVLGEINVAKVQMTYSTTRDYMAQLTFWCLLVGYTLRNLEKRMEMTKI
FENTEAYAESALSDSDN*

mRNA from alignment at NODE_220_length_36054_cov_4.510163:29506..30609-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2295.t1 ID=Gcaud2295.t1|Name=Gcaud2295.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:29506..30609- (Gracilaria caudata M_176_S67 male)
ATGCCGTTGCATGCCGTTTTCATATGGAGCGATGACTATTCCGACGACGC
CGCAGATGACGCCGATGACGCCGATGAGGACGATACCACCGAACACGAAC
ACGACTTCTTCGAGATTTCAGAAGACCCTTGGAAACGCGCCCACCGCTCC
ATGGATCATTCGCAACCTAGCGCCTCTTCGTTTGCGTCACATCATTATGC
TAGACGACAGTCTGATGATGATCACCATCATGACGAGCACCATTCGCAAC
ATGCTCAGTCGTCTGACGATCAAAACCCGTTGTTTGCTGCCATTCGGAGG
AACACTCAAGGTCCGGATGATATTGATCGTCTGCGCCAGCTTGCTTCAGA
AGGCGCTGCCGAAACCTTTCGCGATGTAGTCATCGGTGTTTTGGGTAATA
TGCCGTCGGATGTATACGAGGTGATCGTAACCACCGATCGTAACGGTATG
TCACGCCTTATGCATAGCTCGTTGTCAACTGGATATGCACTGCGAAACGC
GGAGTTTCGTATGTTGCTCAACGAGAATATGAACTCTTTCCATCGCTCAC
AGCACGAAAGAAAACGCGACGACACCTCAGCTGTACGTGATTTGTTCGCG
GCTGAACCTTCGTACATGCACAACGTGCCGAGAAGAGGAAAGCCTGATAC
TAGTAGGATCAAGGGGGTGGTTAGATTGTGGGACACAGAACGCGAAGCGA
AACAGGAACTTACTGCTGCCGAATATGTGGCAAAGCTTGAAGCGGAGAAC
GAGTTATTGCGAGATCGTCTCTCCGCTACGCAGTTGCATGGCGCTAATCG
CAACCAGTTGATGGCGTTTGTGAGAACACTTACACCGCAAAAGCTCACAG
AGTTGCAAGCCAATTCGAGTGATGAGGTTGTGGGTGCCTTCAAGAGTGTT
GTGAAGAGCGTGCTTGGCGAAATCAATGTTGCGAAGGTGCAGATGACGTA
TTCAACAACCAGAGATTATATGGCGCAACTTACCTTTTGGTGCTTGCTTG
TCGGTTATACTCTGCGTAACCTCGAGAAGCGTATGGAAATGACCAAGATT
TTTGAGAATACTGAGGCGTACGCCGAGTCGGCTTTGAGTGACAGCGATAA
CTGA

Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:29506..30609-

>Gcaud2295.t1 ID=Gcaud2295.t1|Name=Gcaud2295.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1104bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:29506..30609- (Gracilaria caudata M_176_S67 male)
ATGCCGTTGCATGCCGTTTTCATATGGAGCGATGACTATTCCGACGACGC
CGCAGATGACGCCGATGACGCCGATGAGGACGATACCACCGAACACGAAC
ACGACTTCTTCGAGATTTCAGAAGACCCTTGGAAACGCGCCCACCGCTCC
ATGGATCATTCGCAACCTAGCGCCTCTTCGTTTGCGTCACATCATTATGC
TAGACGACAGTCTGATGATGATCACCATCATGACGAGCACCATTCGCAAC
ATGCTCAGTCGTCTGACGATCAAAACCCGTTGTTTGCTGCCATTCGGAGG
AACACTCAAGGTCCGGATGATATTGATCGTCTGCGCCAGCTTGCTTCAGA
AGGCGCTGCCGAAACCTTTCGCGATGTAGTCATCGGTGTTTTGGGTAATA
TGCCGTCGGATGTATACGAGGTGATCGTAACCACCGATCGTAACGGTATG
TCACGCCTTATGCATAGCTCGTTGTCAACTGGATATGCACTGCGAAACGC
GGAGTTTCGTATGTTGCTCAACGAGAATATGAACTCTTTCCATCGCTCAC
AGCACGAAAGAAAACGCGACGACACCTCAGCTGTACGTGATTTGTTCGCG
GCTGAACCTTCGTACATGCACAACGTGCCGAGAAGAGGAAAGCCTGATAC
TAGTAGGATCAAGGGGGTGGTTAGATTGTGGGACACAGAACGCGAAGCGA
AACAGGAACTTACTGCTGCCGAATATGTGGCAAAGCTTGAAGCGGAGAAC
GAGTTATTGCGAGATCGTCTCTCCGCTACGCAGTTGCATGGCGCTAATCG
CAACCAGTTGATGGCGTTTGTGAGAACACTTACACCGCAAAAGCTCACAG
AGTTGCAAGCCAATTCGAGTGATGAGGTTGTGGGTGCCTTCAAGAGTGTT
GTGAAGAGCGTGCTTGGCGAAATCAATGTTGCGAAGGTGCAGATGACGTA
TTCAACAACCAGAGATTATATGGCGCAACTTACCTTTTGGTGCTTGCTTG
TCGGTTATACTCTGCGTAACCTCGAGAAGCGTATGGAAATGACCAAGATT
TTTGAGAATACTGAGGCGTACGCCGAGTCGGCTTTGAGTGACAGCGATAA
CTGA