Gcaud2247.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2247.t1
Unique NameGcaud2247.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_813_length_17642_cov_4.699447contigNODE_813_length_17642_cov_4.699447:2..826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2247Gcaud2247Gracilaria caudata M_176_S67 malegeneNODE_813_length_17642_cov_4.699447 2..826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2247.t1.CDS1Gcaud2247.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_813_length_17642_cov_4.699447 2..826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2247.t1.exon1Gcaud2247.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_813_length_17642_cov_4.699447 2..826 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2247.t1.start1Gcaud2247.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_813_length_17642_cov_4.699447 824..826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2247.t1Gcaud2247.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_813_length_17642_cov_4.699447 2..826 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2247.t1 ID=Gcaud2247.t1|Name=Gcaud2247.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=275bp
MYLVRRFSRTVHEQIPSCIAGETKMRKKFPLFLLALRLTDEHEIQRRAQY
DKLSFSIDSRIEKGVSGPYELSSLRPQDLVHGLAHHSDQIPDRAVIFALS
YNDRHRDPASKTLSVHAAAAVCKALQSIDLVCTNVYFWSDITLARNFARD
LWTDDGLMPYIAYPTIKVGTEETYWASVESDLAHARNAQCGVNDTVSFTL
HFVARRRDRCLEEEAPDVDVLLRRMRAVALGMRPSRGKSGLQMVVNSTRI
VGPPLQSFTVAKELKGAWHGVSEFV
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spliced messenger RNA

>Gcaud2247.t1 ID=Gcaud2247.t1|Name=Gcaud2247.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=825bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:2..826- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCTCGTAAGACGCTTTTCTCGCACTGTTCATGAGCAAATCCCTTC
GTGCATTGCCGGCGAGACCAAGATGCGAAAGAAGTTTCCTCTCTTCCTCC
TTGCGCTCCGACTGACTGACGAGCACGAAATTCAAAGGCGCGCACAATAC
GACAAACTCTCTTTCAGTATTGACTCTCGTATAGAAAAAGGCGTCTCCGG
TCCGTACGAATTGTCTTCTCTCAGACCACAAGATCTTGTGCACGGTCTCG
CCCATCACTCTGATCAGATACCTGACCGCGCTGTTATATTCGCGCTGTCC
TACAATGACAGACACCGCGATCCGGCCTCGAAGACGCTCTCTGTTCATGC
TGCTGCTGCCGTATGCAAAGCTTTGCAGAGTATCGACTTGGTGTGTACTA
ATGTCTATTTCTGGTCCGATATCACATTGGCACGCAATTTTGCTCGAGAT
CTGTGGACCGACGATGGCCTCATGCCATACATTGCCTATCCAACCATCAA
AGTCGGAACTGAGGAAACGTACTGGGCGTCTGTTGAAAGTGACCTTGCTC
ATGCTCGCAATGCGCAGTGCGGTGTTAATGACACTGTCTCTTTCACTCTC
CATTTTGTCGCCCGCCGACGGGATCGCTGTCTCGAGGAAGAGGCTCCGGA
TGTAGACGTTTTGCTCCGCCGCATGCGTGCCGTTGCGTTGGGAATGCGTC
CATCAAGGGGAAAATCTGGTTTGCAAATGGTCGTCAACTCCACTCGTATC
GTAGGACCACCACTTCAGTCCTTCACCGTGGCGAAGGAGCTGAAAGGGGC
TTGGCATGGGGTTTCGGAATTTGTG
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protein sequence of Gcaud2247.t1

>Gcaud2247.t1 ID=Gcaud2247.t1|Name=Gcaud2247.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=275bp
MYLVRRFSRTVHEQIPSCIAGETKMRKKFPLFLLALRLTDEHEIQRRAQY
DKLSFSIDSRIEKGVSGPYELSSLRPQDLVHGLAHHSDQIPDRAVIFALS
YNDRHRDPASKTLSVHAAAAVCKALQSIDLVCTNVYFWSDITLARNFARD
LWTDDGLMPYIAYPTIKVGTEETYWASVESDLAHARNAQCGVNDTVSFTL
HFVARRRDRCLEEEAPDVDVLLRRMRAVALGMRPSRGKSGLQMVVNSTRI
VGPPLQSFTVAKELKGAWHGVSEFV
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mRNA from alignment at NODE_813_length_17642_cov_4.699447:2..826-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2247.t1 ID=Gcaud2247.t1|Name=Gcaud2247.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=825bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:2..826- (Gracilaria caudata M_176_S67 male)
ATGTACCTCGTAAGACGCTTTTCTCGCACTGTTCATGAGCAAATCCCTTC
GTGCATTGCCGGCGAGACCAAGATGCGAAAGAAGTTTCCTCTCTTCCTCC
TTGCGCTCCGACTGACTGACGAGCACGAAATTCAAAGGCGCGCACAATAC
GACAAACTCTCTTTCAGTATTGACTCTCGTATAGAAAAAGGCGTCTCCGG
TCCGTACGAATTGTCTTCTCTCAGACCACAAGATCTTGTGCACGGTCTCG
CCCATCACTCTGATCAGATACCTGACCGCGCTGTTATATTCGCGCTGTCC
TACAATGACAGACACCGCGATCCGGCCTCGAAGACGCTCTCTGTTCATGC
TGCTGCTGCCGTATGCAAAGCTTTGCAGAGTATCGACTTGGTGTGTACTA
ATGTCTATTTCTGGTCCGATATCACATTGGCACGCAATTTTGCTCGAGAT
CTGTGGACCGACGATGGCCTCATGCCATACATTGCCTATCCAACCATCAA
AGTCGGAACTGAGGAAACGTACTGGGCGTCTGTTGAAAGTGACCTTGCTC
ATGCTCGCAATGCGCAGTGCGGTGTTAATGACACTGTCTCTTTCACTCTC
CATTTTGTCGCCCGCCGACGGGATCGCTGTCTCGAGGAAGAGGCTCCGGA
TGTAGACGTTTTGCTCCGCCGCATGCGTGCCGTTGCGTTGGGAATGCGTC
CATCAAGGGGAAAATCTGGTTTGCAAATGGTCGTCAACTCCACTCGTATC
GTAGGACCACCACTTCAGTCCTTCACCGTGGCGAAGGAGCTGAAAGGGGC
TTGGCATGGGGTTTCGGAATTTGTG
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Coding sequence (CDS) from alignment at NODE_813_length_17642_cov_4.699447:2..826-

>Gcaud2247.t1 ID=Gcaud2247.t1|Name=Gcaud2247.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=825bp|location=Sequence derived from alignment at NODE_813_length_17642_cov_4.699447:2..826- (Gracilaria caudata M_176_S67 male)
ATGTACCTCGTAAGACGCTTTTCTCGCACTGTTCATGAGCAAATCCCTTC
GTGCATTGCCGGCGAGACCAAGATGCGAAAGAAGTTTCCTCTCTTCCTCC
TTGCGCTCCGACTGACTGACGAGCACGAAATTCAAAGGCGCGCACAATAC
GACAAACTCTCTTTCAGTATTGACTCTCGTATAGAAAAAGGCGTCTCCGG
TCCGTACGAATTGTCTTCTCTCAGACCACAAGATCTTGTGCACGGTCTCG
CCCATCACTCTGATCAGATACCTGACCGCGCTGTTATATTCGCGCTGTCC
TACAATGACAGACACCGCGATCCGGCCTCGAAGACGCTCTCTGTTCATGC
TGCTGCTGCCGTATGCAAAGCTTTGCAGAGTATCGACTTGGTGTGTACTA
ATGTCTATTTCTGGTCCGATATCACATTGGCACGCAATTTTGCTCGAGAT
CTGTGGACCGACGATGGCCTCATGCCATACATTGCCTATCCAACCATCAA
AGTCGGAACTGAGGAAACGTACTGGGCGTCTGTTGAAAGTGACCTTGCTC
ATGCTCGCAATGCGCAGTGCGGTGTTAATGACACTGTCTCTTTCACTCTC
CATTTTGTCGCCCGCCGACGGGATCGCTGTCTCGAGGAAGAGGCTCCGGA
TGTAGACGTTTTGCTCCGCCGCATGCGTGCCGTTGCGTTGGGAATGCGTC
CATCAAGGGGAAAATCTGGTTTGCAAATGGTCGTCAACTCCACTCGTATC
GTAGGACCACCACTTCAGTCCTTCACCGTGGCGAAGGAGCTGAAAGGGGC
TTGGCATGGGGTTTCGGAATTTGTG
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