Gcaud2233.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2233.t1
Unique Name	Gcaud2233.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	538

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2591_length_5202_cov_3.993935	contig	NODE_2591_length_5202_cov_3.993935:1663..3347 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	999611.KI421504_gene1366
PFAMs	Amidohydro_3
Max annot lvl	28211\|Alphaproteobacteria
Evalue	1.36e-121
EggNOG OGs	COG1574@1\|root,COG1574@2\|Bacteria,1MWP2@1224\|Proteobacteria,2TXAW@28211\|Alphaproteobacteria,282F6@191028\|Leisingera
Description	Amidohydrolase family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2233	Gcaud2233	Gracilaria caudata M_176_S67 male	gene	NODE_2591_length_5202_cov_3.993935 1663..3347 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2233.t1	Gcaud2233.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2591_length_5202_cov_3.993935 1663..3347 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2233.t1.stop1	Gcaud2233.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2591_length_5202_cov_3.993935 1663..1665 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2233.t1.CDS1	Gcaud2233.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2591_length_5202_cov_3.993935 1663..2262 -
Gcaud2233.t1.CDS2	Gcaud2233.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2591_length_5202_cov_3.993935 2334..3347 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2233.t1.exon1	Gcaud2233.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2591_length_5202_cov_3.993935 1663..2262 -
Gcaud2233.t1.exon2	Gcaud2233.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2591_length_5202_cov_3.993935 2334..3347 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2233.t1.intron1	Gcaud2233.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2591_length_5202_cov_3.993935 2263..2333 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2233.t1.start1	Gcaud2233.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2591_length_5202_cov_3.993935 3345..3347 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347-
coding sequence from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347-

mRNA sequence

>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=538bp
MSKPDTAVLVYNAVVYTADKSDSIVDSFAYNADGVILSVGSEGEARDALE
RAGESDYEEVNMSGAFIVPGFQDVHLHIPEAGINRLPDVFCAVDPGRRLS
QYINDLKRCARNGDSTDWLRAAGASLYDLNGVGDSPLVELDKAFPDRPVI
VLDDVGHGAWINSVAMDEAGIDGGGDPRGGIYGRDSSGNFNGLLFENAQQ
KARDASKISFSKMYDGLLEALDVVGRNGITSLSDAGGFWTRDSVDVWLEA
FDNGDISVRAKNTLYVYPDKSFSSQMAKLKGFYRDGKREGDLVSFNTAKI
YVDGILDLGTALLLKDYDYALNERYPRGFPYFDDSALRSYVQELINAGFR
INFHSIGDGATRKALDVLEATSGARESRSRITHSYMIDEADEARFRELNV
IADFQMAPEVISRRYQDEMSEVIGARAYQLIRTQRMLDAGAMVTISSDWD
ADPLSPLWSMSRALQSGRVPNVETAIRVWTINAAYALGHDDVTGSIEAGK
YADYAVLSRNLFDVSHGAIGSVSVEETVLGGRLVYAQ*

spliced messenger RNA

>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAACCCGATACAGCTGTGCTTGTGTACAACGCCGTGGTATACAC
CGCAGATAAGTCGGACTCCATAGTAGACTCTTTTGCGTACAACGCGGACG
GTGTGATTCTGTCAGTCGGTTCAGAAGGCGAAGCTCGCGACGCGCTGGAA
AGAGCCGGCGAATCAGATTATGAGGAAGTCAACATGAGCGGAGCTTTTAT
CGTTCCAGGATTCCAGGATGTTCATCTTCATATCCCGGAGGCTGGTATAA
ACAGACTGCCGGACGTGTTCTGCGCTGTTGACCCTGGTAGAAGACTCTCA
CAGTACATCAACGATTTGAAGCGATGCGCGAGGAATGGGGATTCCACAGA
CTGGCTTCGTGCTGCGGGTGCAAGTCTTTACGACCTGAATGGTGTCGGGG
ACTCGCCGCTTGTTGAACTGGACAAAGCTTTCCCAGATCGACCGGTAATC
GTGCTGGATGATGTGGGTCACGGAGCTTGGATCAATTCTGTGGCCATGGA
CGAAGCTGGCATTGACGGCGGTGGTGATCCAAGAGGGGGTATATATGGAA
GGGATAGCTCTGGAAACTTTAACGGTTTGCTGTTTGAAAACGCTCAACAG
AAGGCGAGGGACGCGTCCAAAATATCGTTCTCGAAAATGTATGATGGGTT
GCTTGAAGCGTTGGATGTTGTGGGCAGAAATGGAATCACCTCTTTGTCTG
ACGCTGGAGGATTTTGGACGAGAGACAGTGTTGATGTATGGCTTGAGGCT
TTTGACAACGGGGATATCTCCGTTCGTGCCAAGAATACTCTGTATGTGTA
TCCAGATAAGTCGTTCTCCAGTCAGATGGCGAAGCTGAAGGGCTTCTACA
GAGATGGAAAGAGGGAAGGCGATTTGGTGTCGTTTAACACAGCCAAAATT
TATGTTGATGGTATTTTGGATCTTGGAACGGCTCTTTTGTTGAAGGACTA
TGACTACGCACTAAACGAAAGATATCCGAGGGGCTTCCCCTACTTTGACG
ATTCCGCGCTGAGGAGCTATGTGCAAGAACTTATCAATGCTGGGTTTCGC
ATTAACTTTCATTCAATTGGTGACGGGGCAACCAGAAAGGCTCTGGATGT
TCTCGAAGCAACTTCGGGCGCAAGAGAGTCGCGTAGCAGAATCACTCATT
CGTACATGATCGATGAGGCCGATGAGGCGAGATTCAGAGAGCTCAACGTG
ATTGCGGACTTTCAAATGGCGCCAGAAGTGATCTCAAGGCGGTATCAAGA
CGAAATGAGCGAGGTGATTGGCGCCAGGGCGTACCAACTCATTCGCACGC
AGCGCATGCTTGACGCCGGCGCGATGGTCACAATTTCGAGCGACTGGGAC
GCCGACCCGCTCTCGCCGCTGTGGTCCATGTCGCGCGCGCTGCAATCCGG
GCGCGTTCCAAACGTGGAGACGGCCATCAGAGTGTGGACCATCAACGCGG
CGTATGCGCTGGGGCACGACGACGTGACGGGGTCGATTGAGGCCGGCAAG
TACGCGGACTACGCGGTGCTGAGCCGCAACCTGTTCGACGTCTCGCACGG
CGCGATTGGCAGCGTGAGCGTGGAGGAGACCGTGCTCGGCGGGCGGCTGG
TGTACGCGCAATAG

protein sequence of Gcaud2233.t1

>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=538bp
MSKPDTAVLVYNAVVYTADKSDSIVDSFAYNADGVILSVGSEGEARDALE
RAGESDYEEVNMSGAFIVPGFQDVHLHIPEAGINRLPDVFCAVDPGRRLS
QYINDLKRCARNGDSTDWLRAAGASLYDLNGVGDSPLVELDKAFPDRPVI
VLDDVGHGAWINSVAMDEAGIDGGGDPRGGIYGRDSSGNFNGLLFENAQQ
KARDASKISFSKMYDGLLEALDVVGRNGITSLSDAGGFWTRDSVDVWLEA
FDNGDISVRAKNTLYVYPDKSFSSQMAKLKGFYRDGKREGDLVSFNTAKI
YVDGILDLGTALLLKDYDYALNERYPRGFPYFDDSALRSYVQELINAGFR
INFHSIGDGATRKALDVLEATSGARESRSRITHSYMIDEADEARFRELNV
IADFQMAPEVISRRYQDEMSEVIGARAYQLIRTQRMLDAGAMVTISSDWD
ADPLSPLWSMSRALQSGRVPNVETAIRVWTINAAYALGHDDVTGSIEAGK
YADYAVLSRNLFDVSHGAIGSVSVEETVLGGRLVYAQ*

mRNA from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1685bp|location=Sequence derived from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347- (Gracilaria caudata M_176_S67 male)
ATGAGCAAACCCGATACAGCTGTGCTTGTGTACAACGCCGTGGTATACAC
CGCAGATAAGTCGGACTCCATAGTAGACTCTTTTGCGTACAACGCGGACG
GTGTGATTCTGTCAGTCGGTTCAGAAGGCGAAGCTCGCGACGCGCTGGAA
AGAGCCGGCGAATCAGATTATGAGGAAGTCAACATGAGCGGAGCTTTTAT
CGTTCCAGGATTCCAGGATGTTCATCTTCATATCCCGGAGGCTGGTATAA
ACAGACTGCCGGACGTGTTCTGCGCTGTTGACCCTGGTAGAAGACTCTCA
CAGTACATCAACGATTTGAAGCGATGCGCGAGGAATGGGGATTCCACAGA
CTGGCTTCGTGCTGCGGGTGCAAGTCTTTACGACCTGAATGGTGTCGGGG
ACTCGCCGCTTGTTGAACTGGACAAAGCTTTCCCAGATCGACCGGTAATC
GTGCTGGATGATGTGGGTCACGGAGCTTGGATCAATTCTGTGGCCATGGA
CGAAGCTGGCATTGACGGCGGTGGTGATCCAAGAGGGGGTATATATGGAA
GGGATAGCTCTGGAAACTTTAACGGTTTGCTGTTTGAAAACGCTCAACAG
AAGGCGAGGGACGCGTCCAAAATATCGTTCTCGAAAATGTATGATGGGTT
GCTTGAAGCGTTGGATGTTGTGGGCAGAAATGGAATCACCTCTTTGTCTG
ACGCTGGAGGATTTTGGACGAGAGACAGTGTTGATGTATGGCTTGAGGCT
TTTGACAACGGGGATATCTCCGTTCGTGCCAAGAATACTCTGTATGTGTA
TCCAGATAAGTCGTTCTCCAGTCAGATGGCGAAGCTGAAGGGCTTCTACA
GAGATGGAAAGAGGGAAGGCGATTTGGTGTCGTTTAACACAGCCAAAATT
TATGTTGATGGTATTTTGGATCTTGGAACGGCTCTTTTGTTGAAGGACTA
TGACTACGCACTAAACGAAAGATATCCGAGGGGCTTCCCCTACTTTGACG
ATTCCGCGCTGAGGGTAAGCTTTTTTTTTATTTACAAAGCTTGCACCTTT
TCTTTTGTGGTTACTAACATTGTGAAACATGCAAGAGCTATGTGCAAGAA
CTTATCAATGCTGGGTTTCGCATTAACTTTCATTCAATTGGTGACGGGGC
AACCAGAAAGGCTCTGGATGTTCTCGAAGCAACTTCGGGCGCAAGAGAGT
CGCGTAGCAGAATCACTCATTCGTACATGATCGATGAGGCCGATGAGGCG
AGATTCAGAGAGCTCAACGTGATTGCGGACTTTCAAATGGCGCCAGAAGT
GATCTCAAGGCGGTATCAAGACGAAATGAGCGAGGTGATTGGCGCCAGGG
CGTACCAACTCATTCGCACGCAGCGCATGCTTGACGCCGGCGCGATGGTC
ACAATTTCGAGCGACTGGGACGCCGACCCGCTCTCGCCGCTGTGGTCCAT
GTCGCGCGCGCTGCAATCCGGGCGCGTTCCAAACGTGGAGACGGCCATCA
GAGTGTGGACCATCAACGCGGCGTATGCGCTGGGGCACGACGACGTGACG
GGGTCGATTGAGGCCGGCAAGTACGCGGACTACGCGGTGCTGAGCCGCAA
CCTGTTCGACGTCTCGCACGGCGCGATTGGCAGCGTGAGCGTGGAGGAGA
CCGTGCTCGGCGGGCGGCTGGTGTACGCGCAATAG

Coding sequence (CDS) from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347-

>Gcaud2233.t1 ID=Gcaud2233.t1|Name=Gcaud2233.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1614bp|location=Sequence derived from alignment at NODE_2591_length_5202_cov_3.993935:1663..3347- (Gracilaria caudata M_176_S67 male)
ATGAGCAAACCCGATACAGCTGTGCTTGTGTACAACGCCGTGGTATACAC
CGCAGATAAGTCGGACTCCATAGTAGACTCTTTTGCGTACAACGCGGACG
GTGTGATTCTGTCAGTCGGTTCAGAAGGCGAAGCTCGCGACGCGCTGGAA
AGAGCCGGCGAATCAGATTATGAGGAAGTCAACATGAGCGGAGCTTTTAT
CGTTCCAGGATTCCAGGATGTTCATCTTCATATCCCGGAGGCTGGTATAA
ACAGACTGCCGGACGTGTTCTGCGCTGTTGACCCTGGTAGAAGACTCTCA
CAGTACATCAACGATTTGAAGCGATGCGCGAGGAATGGGGATTCCACAGA
CTGGCTTCGTGCTGCGGGTGCAAGTCTTTACGACCTGAATGGTGTCGGGG
ACTCGCCGCTTGTTGAACTGGACAAAGCTTTCCCAGATCGACCGGTAATC
GTGCTGGATGATGTGGGTCACGGAGCTTGGATCAATTCTGTGGCCATGGA
CGAAGCTGGCATTGACGGCGGTGGTGATCCAAGAGGGGGTATATATGGAA
GGGATAGCTCTGGAAACTTTAACGGTTTGCTGTTTGAAAACGCTCAACAG
AAGGCGAGGGACGCGTCCAAAATATCGTTCTCGAAAATGTATGATGGGTT
GCTTGAAGCGTTGGATGTTGTGGGCAGAAATGGAATCACCTCTTTGTCTG
ACGCTGGAGGATTTTGGACGAGAGACAGTGTTGATGTATGGCTTGAGGCT
TTTGACAACGGGGATATCTCCGTTCGTGCCAAGAATACTCTGTATGTGTA
TCCAGATAAGTCGTTCTCCAGTCAGATGGCGAAGCTGAAGGGCTTCTACA
GAGATGGAAAGAGGGAAGGCGATTTGGTGTCGTTTAACACAGCCAAAATT
TATGTTGATGGTATTTTGGATCTTGGAACGGCTCTTTTGTTGAAGGACTA
TGACTACGCACTAAACGAAAGATATCCGAGGGGCTTCCCCTACTTTGACG
ATTCCGCGCTGAGGAGCTATGTGCAAGAACTTATCAATGCTGGGTTTCGC
ATTAACTTTCATTCAATTGGTGACGGGGCAACCAGAAAGGCTCTGGATGT
TCTCGAAGCAACTTCGGGCGCAAGAGAGTCGCGTAGCAGAATCACTCATT
CGTACATGATCGATGAGGCCGATGAGGCGAGATTCAGAGAGCTCAACGTG
ATTGCGGACTTTCAAATGGCGCCAGAAGTGATCTCAAGGCGGTATCAAGA
CGAAATGAGCGAGGTGATTGGCGCCAGGGCGTACCAACTCATTCGCACGC
AGCGCATGCTTGACGCCGGCGCGATGGTCACAATTTCGAGCGACTGGGAC
GCCGACCCGCTCTCGCCGCTGTGGTCCATGTCGCGCGCGCTGCAATCCGG
GCGCGTTCCAAACGTGGAGACGGCCATCAGAGTGTGGACCATCAACGCGG
CGTATGCGCTGGGGCACGACGACGTGACGGGGTCGATTGAGGCCGGCAAG
TACGCGGACTACGCGGTGCTGAGCCGCAACCTGTTCGACGTCTCGCACGG
CGCGATTGGCAGCGTGAGCGTGGAGGAGACCGTGCTCGGCGGGCGGCTGG
TGTACGCGCAATAG