Gcaud223.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud223.t1
Unique Name	Gcaud223.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	376

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4754_length_2016_cov_6.573506	contig	NODE_4754_length_2016_cov_6.573506:645..1855 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud223	Gcaud223	Gracilaria caudata M_176_S67 male	gene	NODE_4754_length_2016_cov_6.573506 645..1855 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud223.t1	Gcaud223.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4754_length_2016_cov_6.573506 645..1855 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud223.t1.start1	Gcaud223.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4754_length_2016_cov_6.573506 645..647 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud223.t1.CDS1	Gcaud223.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4754_length_2016_cov_6.573506 645..1755 +
Gcaud223.t1.CDS2	Gcaud223.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_4754_length_2016_cov_6.573506 1839..1855 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud223.t1.exon1	Gcaud223.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4754_length_2016_cov_6.573506 645..1755 +
Gcaud223.t1.exon2	Gcaud223.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_4754_length_2016_cov_6.573506 1839..1855 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud223.t1.intron1	Gcaud223.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_4754_length_2016_cov_6.573506 1756..1838 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud223.t1.stop1	Gcaud223.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4754_length_2016_cov_6.573506 1853..1855 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4754_length_2016_cov_6.573506:645..1855+
coding sequence from alignment at NODE_4754_length_2016_cov_6.573506:645..1855+

mRNA sequence

>Gcaud223.t1 ID=Gcaud223.t1|Name=Gcaud223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=376bp
MGPGWRTRGGRKPFRLSTTVRSRKPGEVPVYDEGVDVRAYRRAVIDWIKF
QDLADKDSDRRLSLGQQIFAILGNIRGNANYRLAHISSMVYAELTREEFG
QMVDYILNTVDPLDRETAFLDTAKAWKELMLKSHGKKQSFDEYWQEYSSL
CTQYAYAHGQAAHSSGVQELLALLCVLNAKLDRTEFTWALKSVIDYQKAV
LNTQDPLSIAGQYRMARQGAQSAADIISQAPSVVRQTESQAMSSAGEAGA
SAAHAVQQLTTAIDLSAALTIRVNDLRRRWDNALANVQQASLSLDESGDS
LEDSVREQMQMAEASLLATQRTLDTLGSMSRQIENLPTSQSQSPTSGDKS
QDEAIITMDSVRIALRRLDHDDLEG*

spliced messenger RNA

>Gcaud223.t1 ID=Gcaud223.t1|Name=Gcaud223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_4754_length_2016_cov_6.573506:645..1855+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCCAGGTTGGAGAACTCGTGGTGGCAGGAAGCCGTTCAGACTTTC
AACAACTGTTCGATCCAGGAAACCAGGAGAAGTGCCAGTCTATGATGAAG
GTGTTGATGTCAGAGCGTACAGGAGAGCCGTAATCGACTGGATTAAGTTC
CAGGATCTTGCTGACAAGGATTCTGACCGCCGCCTCTCATTAGGGCAGCA
GATATTTGCAATCCTCGGGAACATTCGTGGTAATGCAAACTACCGATTGG
CGCACATATCGTCAATGGTGTATGCTGAGTTGACACGAGAAGAATTTGGC
CAAATGGTGGATTATATTCTAAACACAGTTGATCCGCTTGACAGAGAAAC
AGCGTTTCTCGATACAGCGAAAGCATGGAAGGAGCTCATGCTCAAGTCGC
ACGGAAAGAAACAATCTTTCGACGAATATTGGCAAGAGTACAGTAGTCTG
TGTACTCAGTACGCATACGCGCATGGACAAGCGGCACATTCTTCGGGAGT
ACAAGAGCTATTGGCTCTGCTTTGCGTTCTAAATGCCAAGCTAGATCGCA
CAGAATTCACATGGGCTTTGAAGAGTGTAATAGATTACCAGAAGGCAGTG
CTGAATACCCAAGACCCTCTTTCGATCGCAGGCCAATATCGAATGGCACG
ACAGGGTGCGCAATCGGCAGCTGACATTATCAGCCAAGCTCCTAGTGTCG
TTCGTCAGACAGAGTCTCAAGCTATGAGCTCCGCCGGCGAAGCAGGAGCA
AGCGCTGCACATGCAGTACAACAACTGACTACCGCAATAGATTTGAGCGC
TGCGTTGACAATCCGAGTCAATGATCTTCGTAGAAGATGGGATAACGCTT
TAGCCAATGTACAACAGGCATCATTGAGCTTGGATGAATCGGGCGACTCT
CTGGAGGATTCAGTACGAGAACAGATGCAGATGGCCGAAGCATCACTCTT
AGCGACTCAGAGGACACTTGACACGTTGGGCTCAATGAGCCGGCAGATTG
AAAATCTACCAACATCACAAAGTCAAAGTCCAACCAGTGGTGATAAAAGT
CAGGACGAAGCAATTATAACCATGGACTCAGTTCGTATTGCTTTGAGAAG
Actggaccatgacgacctcgagggctag

protein sequence of Gcaud223.t1

>Gcaud223.t1 ID=Gcaud223.t1|Name=Gcaud223.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=376bp
MGPGWRTRGGRKPFRLSTTVRSRKPGEVPVYDEGVDVRAYRRAVIDWIKF
QDLADKDSDRRLSLGQQIFAILGNIRGNANYRLAHISSMVYAELTREEFG
QMVDYILNTVDPLDRETAFLDTAKAWKELMLKSHGKKQSFDEYWQEYSSL
CTQYAYAHGQAAHSSGVQELLALLCVLNAKLDRTEFTWALKSVIDYQKAV
LNTQDPLSIAGQYRMARQGAQSAADIISQAPSVVRQTESQAMSSAGEAGA
SAAHAVQQLTTAIDLSAALTIRVNDLRRRWDNALANVQQASLSLDESGDS
LEDSVREQMQMAEASLLATQRTLDTLGSMSRQIENLPTSQSQSPTSGDKS
QDEAIITMDSVRIALRRLDHDDLEG*

mRNA from alignment at NODE_4754_length_2016_cov_6.573506:645..1855+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud223.t1 ID=Gcaud223.t1|Name=Gcaud223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1211bp|location=Sequence derived from alignment at NODE_4754_length_2016_cov_6.573506:645..1855+ (Gracilaria caudata M_176_S67 male)
ATGGGCCCAGGTTGGAGAACTCGTGGTGGCAGGAAGCCGTTCAGACTTTC
AACAACTGTTCGATCCAGGAAACCAGGAGAAGTGCCAGTCTATGATGAAG
GTGTTGATGTCAGAGCGTACAGGAGAGCCGTAATCGACTGGATTAAGTTC
CAGGATCTTGCTGACAAGGATTCTGACCGCCGCCTCTCATTAGGGCAGCA
GATATTTGCAATCCTCGGGAACATTCGTGGTAATGCAAACTACCGATTGG
CGCACATATCGTCAATGGTGTATGCTGAGTTGACACGAGAAGAATTTGGC
CAAATGGTGGATTATATTCTAAACACAGTTGATCCGCTTGACAGAGAAAC
AGCGTTTCTCGATACAGCGAAAGCATGGAAGGAGCTCATGCTCAAGTCGC
ACGGAAAGAAACAATCTTTCGACGAATATTGGCAAGAGTACAGTAGTCTG
TGTACTCAGTACGCATACGCGCATGGACAAGCGGCACATTCTTCGGGAGT
ACAAGAGCTATTGGCTCTGCTTTGCGTTCTAAATGCCAAGCTAGATCGCA
CAGAATTCACATGGGCTTTGAAGAGTGTAATAGATTACCAGAAGGCAGTG
CTGAATACCCAAGACCCTCTTTCGATCGCAGGCCAATATCGAATGGCACG
ACAGGGTGCGCAATCGGCAGCTGACATTATCAGCCAAGCTCCTAGTGTCG
TTCGTCAGACAGAGTCTCAAGCTATGAGCTCCGCCGGCGAAGCAGGAGCA
AGCGCTGCACATGCAGTACAACAACTGACTACCGCAATAGATTTGAGCGC
TGCGTTGACAATCCGAGTCAATGATCTTCGTAGAAGATGGGATAACGCTT
TAGCCAATGTACAACAGGCATCATTGAGCTTGGATGAATCGGGCGACTCT
CTGGAGGATTCAGTACGAGAACAGATGCAGATGGCCGAAGCATCACTCTT
AGCGACTCAGAGGACACTTGACACGTTGGGCTCAATGAGCCGGCAGATTG
AAAATCTACCAACATCACAAAGTCAAAGTCCAACCAGTGGTGATAAAAGT
CAGGACGAAGCAATTATAACCATGGACTCAGTTCGTATTGCTTTGAGAAG
Actggaccatggtgagtctgcagcccgtacacaactcagctcttacagtt
cttcttggaaagatagttcagagcgacaaacatttagcaagaagacgacc
tcgagggctag

Coding sequence (CDS) from alignment at NODE_4754_length_2016_cov_6.573506:645..1855+

>Gcaud223.t1 ID=Gcaud223.t1|Name=Gcaud223.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1128bp|location=Sequence derived from alignment at NODE_4754_length_2016_cov_6.573506:645..1855+ (Gracilaria caudata M_176_S67 male)
ATGGGCCCAGGTTGGAGAACTCGTGGTGGCAGGAAGCCGTTCAGACTTTC
AACAACTGTTCGATCCAGGAAACCAGGAGAAGTGCCAGTCTATGATGAAG
GTGTTGATGTCAGAGCGTACAGGAGAGCCGTAATCGACTGGATTAAGTTC
CAGGATCTTGCTGACAAGGATTCTGACCGCCGCCTCTCATTAGGGCAGCA
GATATTTGCAATCCTCGGGAACATTCGTGGTAATGCAAACTACCGATTGG
CGCACATATCGTCAATGGTGTATGCTGAGTTGACACGAGAAGAATTTGGC
CAAATGGTGGATTATATTCTAAACACAGTTGATCCGCTTGACAGAGAAAC
AGCGTTTCTCGATACAGCGAAAGCATGGAAGGAGCTCATGCTCAAGTCGC
ACGGAAAGAAACAATCTTTCGACGAATATTGGCAAGAGTACAGTAGTCTG
TGTACTCAGTACGCATACGCGCATGGACAAGCGGCACATTCTTCGGGAGT
ACAAGAGCTATTGGCTCTGCTTTGCGTTCTAAATGCCAAGCTAGATCGCA
CAGAATTCACATGGGCTTTGAAGAGTGTAATAGATTACCAGAAGGCAGTG
CTGAATACCCAAGACCCTCTTTCGATCGCAGGCCAATATCGAATGGCACG
ACAGGGTGCGCAATCGGCAGCTGACATTATCAGCCAAGCTCCTAGTGTCG
TTCGTCAGACAGAGTCTCAAGCTATGAGCTCCGCCGGCGAAGCAGGAGCA
AGCGCTGCACATGCAGTACAACAACTGACTACCGCAATAGATTTGAGCGC
TGCGTTGACAATCCGAGTCAATGATCTTCGTAGAAGATGGGATAACGCTT
TAGCCAATGTACAACAGGCATCATTGAGCTTGGATGAATCGGGCGACTCT
CTGGAGGATTCAGTACGAGAACAGATGCAGATGGCCGAAGCATCACTCTT
AGCGACTCAGAGGACACTTGACACGTTGGGCTCAATGAGCCGGCAGATTG
AAAATCTACCAACATCACAAAGTCAAAGTCCAACCAGTGGTGATAAAAGT
CAGGACGAAGCAATTATAACCATGGACTCAGTTCGTATTGCTTTGAGAAG
Actggaccatgacgacctcgagggctag