|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2229.t1.stop1 | Gcaud2229.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1377_length_11054_cov_8.073611 3249..3251 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2229.t1.start1 | Gcaud2229.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1377_length_11054_cov_8.073611 4885..4887 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2229.t1 ID=Gcaud2229.t1|Name=Gcaud2229.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=197bp
MKTYLATTKLCEITTKTPWRGAVLKRRVRGAHTAWERICLTTRYRLLTSL
FGFALIFGYMAILLFCNLWTNVREALSHPCTVLTPVAMRGSNLLFARGHP
EKILPRLHSNAGQILTLEGVGLLPPPKEESGVVFRGGKREFEHANSASPF
VPFLRVALPSLRLCSALPPCLSNTLFRKGGEHAVSISSPTKSSLYM* back to topspliced messenger RNA >Gcaud2229.t1 ID=Gcaud2229.t1|Name=Gcaud2229.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:3249..4887- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGACTTATCTTGCAACAACGAAGCTGTGTGAGATTACGACGAAGAC
ACCGTGGCGAGGAGCTGTACTTAAGAGACGCGTGCGGGGCGCACATACGG
CTTGGGAAAGAATCTGCCTCACTACCCGCTACCGCCTTCTAACGTCATTG
TTTGGTTTCGCCTTGATCTTCGGCTACATGGCCATCCTGCTCTTTTGCAA
TCTCTGGACTAATGTCAGGGAGGCTCTATCACACCCTTGTACAGTATTGA
CCCCCGTTGCCATGCGCGGTTCCAATTTGCTCTTCGCACGTGGTCATCCG
GAGAAGATTCTGCCTCGCCTCCACAGTAATGCTGGTCAGATCCTAACCTT
GGAAGGTGTTGGGCTCTTACCGCCACCAAAAGAAGAAAGTGGTGTCGTCT
TTCGAGGCGGCAAAAGAGAGTTTGAACACGCCAATTCAGCATCACCATTT
GTCCCATTCCTGCGAGTAGCGCTTCCGTCATTGAGATTATGCTCCGCCCT
TCCGCCCTGTTTGTCCAACACACTGTTTCGCAAAGGTGGTGAACATGCCG
TATCCATTTCGTCGCCGACAAAATCCTCTCTATACATGTGA back to topprotein sequence of Gcaud2229.t1 >Gcaud2229.t1 ID=Gcaud2229.t1|Name=Gcaud2229.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=197bp
MKTYLATTKLCEITTKTPWRGAVLKRRVRGAHTAWERICLTTRYRLLTSL
FGFALIFGYMAILLFCNLWTNVREALSHPCTVLTPVAMRGSNLLFARGHP
EKILPRLHSNAGQILTLEGVGLLPPPKEESGVVFRGGKREFEHANSASPF
VPFLRVALPSLRLCSALPPCLSNTLFRKGGEHAVSISSPTKSSLYM* back to topmRNA from alignment at NODE_1377_length_11054_cov_8.073611:3249..4887- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2229.t1 ID=Gcaud2229.t1|Name=Gcaud2229.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1639bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:3249..4887- (Gracilaria caudata M_176_S67 male)
ATGAAGACTTATCTTGCAACAACGAAGCTGTGTGAGATTACGACGAAGAC
ACCGTGGCGAGGAGCTGTACTTAAGAGACGCGTGCGGGGCGCACATACGG
CTTGGGAAAGGTAAGCGACGACAAAGCAGAAGAGAGATGCGGACGGGTAC
GGAACGTGCGCAGGGGCACGCTGGGCGTGAAGGAGTTGGCGGGCATTGTG
CTCTGCGAGACGAAGGCGACAAGGAGGCCGCGACGAGAAGGACCAGAACC
CGAAGGTGATGACTTGAGCCGGCCTTGTCTGCCGCGCAAACTCGGGGGTT
CGCCGAATCGGCCTGCATTGCAGTAACAATTCACGAGTGTGGAAGAAAAA
GCGCCATGCGGTGATGCGCGCACACACGCCTCCCACGCCGACATGCGAGC
TCAGATCGCACCATCGCGCCTCCATCGCAATCTCGCCGCGATCCGCCGCC
TTATACGCCTTAATAATGCCCATCCACCCACCGCCGTCGTCCCGTGCCCA
TCACCGCCGTCCCCGGATGAGACGCGCCACCTGCGTCTTGCAGCAAAATC
TCCCCAACGCCACGCGCTCATCACTTACATCTTTCCCACTAGAATCTGCC
TCACTACCGTCCATCAACACGCTTGCAATAAGAACTGCGCGCCGACAACC
CGCCCACGCTTTTTCCATCATTCCGGATGCATTGTCTGCCTCGTCGCAGT
CGCTGCTGACCATACCGTTCTTTCTGCCACCTGCAGCGCTACCGCCTTCT
AACGTCATTGTTTGGTTTCGCCTTGATCTTCGGCTACATGGCCATCCTGC
TCTTTTGCAATCTCTGGACTAATGTCAGGGAGGCTCTATCACACCCTTGT
ACAGTATTGACCCCCGTTGCCATGGTAAGACCAGTTATGGATTCCGAAAA
ACAGGACGTCATCGCGTCAATTTCCTCGTCCTGGCTGTCACTAACCTGAG
AGTCACTTGCCAAGCGCGGTTCCAATTTGCTCTTCGCACGTGGTCATCCG
GAGAAGATTCTGCCTCGCCTCCACAGTAGTATGCCATAAGGAGGGAGCGA
TTGCTGATATCCGTCTGGAACAAAATGTAGAAGAAGCGCTCCAACGATGT
GGAGTGGCTTTCAGTTCTCTCTTTCGAACTATCTTTACCACGTATCTTAT
CCGATCTTCCTTTCCCAATTCACTACATTCCAGATTCATACGCTGTCTTT
CGCGAACCAGTGCAAAAATCCAGTTTAATAAGAAAACCACTTCAGCCTCC
AGACAGCCTGTCGTCTTTTCCATCAATAGATGCTGGTCAGATCCTAACCT
TGGAAGGTGTTGGGCTCTTACCGCCACCAAAAGAAGAAAGTGGTGTCGTC
TTTCGAGGCGGCAAAAGAGAGGTATTGTTAAAACTGTCTCAATATGTCGA
AGATGTTAACAACATACCGCGCAAACGGTCTGAAGCGGATCATCTTGGTT
CTGACTTCTTTTACAAAGTTTGAACACGCCAATTCAGCATCACCATTTGT
CCCATTCCTGCGAGTAGCGCTTCCGTCATTGAGATTATGCTCCGCCCTTC
CGCCCTGTTTGTCCAACACACTGTTTCGCAAAGGTGGTGAACATGCCGTA
TCCATTTCGTCGCCGACAAAATCCTCTCTATACATGTGA back to topCoding sequence (CDS) from alignment at NODE_1377_length_11054_cov_8.073611:3249..4887- >Gcaud2229.t1 ID=Gcaud2229.t1|Name=Gcaud2229.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=591bp|location=Sequence derived from alignment at NODE_1377_length_11054_cov_8.073611:3249..4887- (Gracilaria caudata M_176_S67 male)
ATGAAGACTTATCTTGCAACAACGAAGCTGTGTGAGATTACGACGAAGAC
ACCGTGGCGAGGAGCTGTACTTAAGAGACGCGTGCGGGGCGCACATACGG
CTTGGGAAAGAATCTGCCTCACTACCCGCTACCGCCTTCTAACGTCATTG
TTTGGTTTCGCCTTGATCTTCGGCTACATGGCCATCCTGCTCTTTTGCAA
TCTCTGGACTAATGTCAGGGAGGCTCTATCACACCCTTGTACAGTATTGA
CCCCCGTTGCCATGCGCGGTTCCAATTTGCTCTTCGCACGTGGTCATCCG
GAGAAGATTCTGCCTCGCCTCCACAGTAATGCTGGTCAGATCCTAACCTT
GGAAGGTGTTGGGCTCTTACCGCCACCAAAAGAAGAAAGTGGTGTCGTCT
TTCGAGGCGGCAAAAGAGAGTTTGAACACGCCAATTCAGCATCACCATTT
GTCCCATTCCTGCGAGTAGCGCTTCCGTCATTGAGATTATGCTCCGCCCT
TCCGCCCTGTTTGTCCAACACACTGTTTCGCAAAGGTGGTGAACATGCCG
TATCCATTTCGTCGCCGACAAAATCCTCTCTATACATGTGA back to top
|