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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2222.t1.start1 | Gcaud2222.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_746_length_18753_cov_4.651538 5492..5494 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2222.t1.stop1 | Gcaud2222.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_746_length_18753_cov_4.651538 6784..6786 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2222.t1 ID=Gcaud2222.t1|Name=Gcaud2222.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=176bp
MMITLFFGAPIQKSFSSRMMMASHVEASEYRTSADKGRSHMESGVDKNLA
WAPRCAPIGFETVPSHVTVTLPKILYYRYDNFEFSVLKDISDKQFTLPAS
DSVREMKAFISGNSPNATEIFICRCITCCTQQSNIRDLYSQILLSHAKDS
SKSTDNCGMGSGKYFQHETPVFDHM* back to topspliced messenger RNA >Gcaud2222.t1 ID=Gcaud2222.t1|Name=Gcaud2222.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:5492..6786+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGATGATAACATTATTCTTCGGCGCACCGATTCAGAAGAGCTTTTCGTC
GAGAATGATGATGGCCTCACATGTCGAGGCAAGCGAGTACAGAACCAGTG
CTGACAAAGGGCGGTCTCATATGGAAAGTGGTGTCGACAAAAACCTTGCT
TGGGCACCGAGGTGCGCACCGATTGGATTTGAAACTGTACCGTCGCACGT
TACTGTAACTCTACCAAAGATTCTTTACTACCGTTATGATAACTTCGAAT
TTTCTGTTCTAAAAGATATCTCCGACAAGCAGTTCACGTTACCTGCTTCG
GATTCGGTCCGTGAGATGAAGGCCTTCATCTCGGGCAACTCCCCGAACGC
GACAGAGATCTTTATATGCAGATGTATAACATGCTGCACCCAACAATCAA
ACATTCGCGACCTGTACTCACAAATCTTGTTGTCCCATGCTAAAGACTCT
TCGAAGAGCACCGACAACTGTGGCATGGGAAGCGGGAAATATTTCCAACA
TGAGACACCTGTTTTTGATCACATGTGA back to topprotein sequence of Gcaud2222.t1 >Gcaud2222.t1 ID=Gcaud2222.t1|Name=Gcaud2222.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=176bp
MMITLFFGAPIQKSFSSRMMMASHVEASEYRTSADKGRSHMESGVDKNLA
WAPRCAPIGFETVPSHVTVTLPKILYYRYDNFEFSVLKDISDKQFTLPAS
DSVREMKAFISGNSPNATEIFICRCITCCTQQSNIRDLYSQILLSHAKDS
SKSTDNCGMGSGKYFQHETPVFDHM* back to topmRNA from alignment at NODE_746_length_18753_cov_4.651538:5492..6786+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2222.t1 ID=Gcaud2222.t1|Name=Gcaud2222.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1295bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:5492..6786+ (Gracilaria caudata M_176_S67 male)
ATGATGATAACATTATTCTTCGGCGCACCGATTCAGAAGAGCTTTTCGTC
GAGAATGATGATGGCCTCACATGTCGAGGCAAGCGAGTACAGAACCAGTG
CTGACAAAGGGCGGTCTCATATGGAAAGTGGTGTATGTGGCACGCAAACA
GTGAACGGCCACGGACTCTGTGGCACAGAAGAACTGAGGGTGAACATGTA
ATTACAACTTGAAGAGGGTTAACATTGGGCACGATAGACGTTTGCAGGCA
TTGGTTCTAAAACAAGTACTGTATAGAGCCATGACCGCGCGTCATGGCAC
TGCTTTCAAGGGTATTGAAATCCACGTATGAAAACGGCATGAACCGGCAA
AAAGGTCGACAAAAACCTTGCTTGGGCACCGAGGTGCGCACCGATTGGAT
TTGAAACTGTACCGTCGCACGTTACTGTAACTCTACCAAAGGTAACGTAT
CTACAAGCCATTGGGGATCCTCCTGCTAGGTTAGCCGTAGCCGTGATGAG
CAGTGTTCACCACGGCTACGCCCGGTTAGGTGAATGTTCACTGAACAGCC
ACCTTGGTGGTTCCCGACTTCGACTGGGACATCCATCCTCTGTGCAACGG
TGCTTGTGCTGCACAGAGAGGGAGAGGGGTTTAAATGTTTTGGGCTTGGC
GCTCTTAGCCAAAGAAGCCGTGGAGCGTTCTAACCAGCATCTGGCAACAT
GATCTGCAGATTCTTTACTACCGTTATGATAACTTCGAATTTTCTGTTCT
AAAAGATATCTCCGTAGCTATCAGGAGTTGAGGGCTGAGAGGTTAACCCT
TCAACACGAAAGAGAGCGCCTGTCATCACTCCTGAAGGATGTTCCTTCGT
TCGATGAACCCGCCGAAAGAGCCTTTCATCTGTTTTGTGAAAACAAAATG
ACTGCGATGTTGAAACGAGGACAAGCAGTTCACGTTACCTGCTTCGGATT
CGGTCCGTGAGATGAAGGCCTTCATCTCGGGCAACTCGTAAGTTGATCAA
CTCACTTGATCTCTTGCTCAGTAATATTAACGATCAAGAGATCAGGTAAT
ATTGTTACTTGCACTGGATGTCCTTGTTGCAACCCTCTTAACTAACATCA
TGATGAAGCCCGAACGCGACAGAGATCTTTATATGCAGATGTATAACATG
CTGCACCCAACAATCAAACATTCGCGACCTGTACTCACAAATCTTGTTGT
CCCATGCTAAAGACTCTTCGAAGAGCACCGACAACTGTGGCATGGGAAGC
GGGAAATATTTCCAACATGAGACACCTGTTTTTGATCACATGTGA back to topCoding sequence (CDS) from alignment at NODE_746_length_18753_cov_4.651538:5492..6786+ >Gcaud2222.t1 ID=Gcaud2222.t1|Name=Gcaud2222.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=528bp|location=Sequence derived from alignment at NODE_746_length_18753_cov_4.651538:5492..6786+ (Gracilaria caudata M_176_S67 male)
ATGATGATAACATTATTCTTCGGCGCACCGATTCAGAAGAGCTTTTCGTC
GAGAATGATGATGGCCTCACATGTCGAGGCAAGCGAGTACAGAACCAGTG
CTGACAAAGGGCGGTCTCATATGGAAAGTGGTGTCGACAAAAACCTTGCT
TGGGCACCGAGGTGCGCACCGATTGGATTTGAAACTGTACCGTCGCACGT
TACTGTAACTCTACCAAAGATTCTTTACTACCGTTATGATAACTTCGAAT
TTTCTGTTCTAAAAGATATCTCCGACAAGCAGTTCACGTTACCTGCTTCG
GATTCGGTCCGTGAGATGAAGGCCTTCATCTCGGGCAACTCCCCGAACGC
GACAGAGATCTTTATATGCAGATGTATAACATGCTGCACCCAACAATCAA
ACATTCGCGACCTGTACTCACAAATCTTGTTGTCCCATGCTAAAGACTCT
TCGAAGAGCACCGACAACTGTGGCATGGGAAGCGGGAAATATTTCCAACA
TGAGACACCTGTTTTTGATCACATGTGA back to top
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