Gcaud2217.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2217.t1
Unique NameGcaud2217.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length76
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_492_length_23814_cov_5.019981contigNODE_492_length_23814_cov_5.019981:17929..18548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121930.AQXG01000001_gene1222
PFAMsHc1
Max annot lvl976|Bacteroidetes
Evalue3e-13
EggNOG OGs2BVK8@1|root,32Y0S@2|Bacteria,4NUUA@976|Bacteroidetes,1ITXR@117747|Sphingobacteriia
Descriptionhistone H1-like protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2217Gcaud2217Gracilaria caudata M_176_S67 malegeneNODE_492_length_23814_cov_5.019981 17929..18548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2217.t1Gcaud2217.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_492_length_23814_cov_5.019981 17929..18548 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2217.t1.start1Gcaud2217.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_492_length_23814_cov_5.019981 17929..17931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2217.t1.CDS1Gcaud2217.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_492_length_23814_cov_5.019981 17929..17947 +
Gcaud2217.t1.CDS2Gcaud2217.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_492_length_23814_cov_5.019981 18079..18090 +
Gcaud2217.t1.CDS3Gcaud2217.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_492_length_23814_cov_5.019981 18352..18548 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2217.t1.exon1Gcaud2217.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_492_length_23814_cov_5.019981 17929..17947 +
Gcaud2217.t1.exon2Gcaud2217.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_492_length_23814_cov_5.019981 18079..18090 +
Gcaud2217.t1.exon3Gcaud2217.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_492_length_23814_cov_5.019981 18352..18548 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2217.t1.intron1Gcaud2217.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_492_length_23814_cov_5.019981 17948..18078 +
Gcaud2217.t1.intron2Gcaud2217.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_492_length_23814_cov_5.019981 18091..18351 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2217.t1.stop1Gcaud2217.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_492_length_23814_cov_5.019981 18546..18548 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2217.t1 ID=Gcaud2217.t1|Name=Gcaud2217.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=76bp
LRPPCSDVYRPMEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQE
LKKLAQELRVAIQDTKANMANPVAE*
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spliced messenger RNA

>Gcaud2217.t1 ID=Gcaud2217.t1|Name=Gcaud2217.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:17929..18548+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGTCCGCCCTGTTCCGACGTTTACCGCCCCATGGAAAAGCTTCAACA
GCTCAAGGAGGTCATGGACGCCGTGTCCAAGGACAGCACCAAGTTCTTCG
AGAAGGGTAACAAGGCCGCCGGCACGCGCGCCCGCAAGAACCTGCAGGAG
CTCAAGAAGCTCGCCCAAGAGCTACGTGTCGCAATACAAGACACCAAAGC
CAACATGGCCAACCCTGTTGCGGAGTGA
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protein sequence of Gcaud2217.t1

>Gcaud2217.t1 ID=Gcaud2217.t1|Name=Gcaud2217.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=76bp
LRPPCSDVYRPMEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQE
LKKLAQELRVAIQDTKANMANPVAE*
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mRNA from alignment at NODE_492_length_23814_cov_5.019981:17929..18548+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2217.t1 ID=Gcaud2217.t1|Name=Gcaud2217.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=620bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:17929..18548+ (Gracilaria caudata M_176_S67 male)
CTGCGTCCGCCCTGTTCCGGTAAGTTTGTGTACGCGCCAAATAAATCGCG
CGCCGCGCGCCTTGTGCGGCAGCGCTTTGCATACGCTGTGCTTCCGAGCG
TGCTGACCCGCCCCGTCGCCCCTTTTCTTCGCGCGCGCTATGCCGCCCAG
ACGTTTACCGCCGTGAGCTGCCTGCTTCGTGCTCCGCTTTCGCTTCGTCC
CGCCCACCGCCGTGCATCGCTCAACAGCGCTCTCCGCCCCGTCGACGCGT
GCCGTTCCGCCGTGCCTCTCCCGCGCTGCTCTCGCCCGTGTTGCCCAGCT
gcctcgcccgcctgcgcacttcgtttgcgcgttcgccgccgccgccgctt
tcgccacgtcgccgcACACGCGCGCTTTGCTTCCACCAGCCCCCTGCCGT
AAACCAACCCCCCCAGCCGCAAGCCATGGAAAAGCTTCAACAGCTCAAGG
AGGTCATGGACGCCGTGTCCAAGGACAGCACCAAGTTCTTCGAGAAGGGT
AACAAGGCCGCCGGCACGCGCGCCCGCAAGAACCTGCAGGAGCTCAAGAA
GCTCGCCCAAGAGCTACGTGTCGCAATACAAGACACCAAAGCCAACATGG
CCAACCCTGTTGCGGAGTGA
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Coding sequence (CDS) from alignment at NODE_492_length_23814_cov_5.019981:17929..18548+

>Gcaud2217.t1 ID=Gcaud2217.t1|Name=Gcaud2217.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=228bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:17929..18548+ (Gracilaria caudata M_176_S67 male)
CTGCGTCCGCCCTGTTCCGACGTTTACCGCCCCATGGAAAAGCTTCAACA
GCTCAAGGAGGTCATGGACGCCGTGTCCAAGGACAGCACCAAGTTCTTCG
AGAAGGGTAACAAGGCCGCCGGCACGCGCGCCCGCAAGAACCTGCAGGAG
CTCAAGAAGCTCGCCCAAGAGCTACGTGTCGCAATACAAGACACCAAAGC
CAACATGGCCAACCCTGTTGCGGAGTGA
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