Gcaud2216.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2216.t1
Unique Name	Gcaud2216.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	406

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_492_length_23814_cov_5.019981	contig	NODE_492_length_23814_cov_5.019981:16238..17455 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMH242CT
PFAMs	Oxysterol_BP,PH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20456
Evalue	8.73e-73
EggNOG OGs	KOG1737@1\|root,KOG1737@2759\|Eukaryota
Description	lipid transport
COG category	O
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2216	Gcaud2216	Gracilaria caudata M_176_S67 male	gene	NODE_492_length_23814_cov_5.019981 16238..17455 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2216.t1.stop1	Gcaud2216.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_492_length_23814_cov_5.019981 16238..16240 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2216.t1.CDS1	Gcaud2216.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_492_length_23814_cov_5.019981 16238..17455 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2216.t1.exon1	Gcaud2216.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_492_length_23814_cov_5.019981 16238..17455 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2216.t1.start1	Gcaud2216.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_492_length_23814_cov_5.019981 17453..17455 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2216.t1	Gcaud2216.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_492_length_23814_cov_5.019981 16238..17455 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_492_length_23814_cov_5.019981:16238..17455-
coding sequence from alignment at NODE_492_length_23814_cov_5.019981:16238..17455-

mRNA sequence

>Gcaud2216.t1 ID=Gcaud2216.t1|Name=Gcaud2216.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=406bp
MTVSTFDDDVSLSALPPSPYRAPAPPQRVVPPPSKPNLFAILKDAVTKDI
TRMTIPVQFNEPLSFLQRLAEDIEYHHLLDTAAQPAYAQTPQRAALVAAF
VISQYSSTAARTSKPFNPLLGETFELALPQRGVVFVAEQVSHHPPMSAVF
AKGKGWTYQTAHRVRNKFLVNAMEAWPEGTVHIHFDDGDHFMYDKPHTFI
NNIFFGNMWIDSAGAVTIRNDHFVASLLMKRACTLPFREGKGLGDTIGSI
YSAKDRSKKPLRKIIANWTSHVLVDGHEVWRISPKPPSSHTASSSLTSWA
WALNAPVQVDSSMSIPKTDSRRRPDQRALENGDHALATSEKARLEQTQRE
RRQANERENKLFQPQWFELRHEPLTGRKEWRYGRQYFGRKRDATDAWPQE
SPDIF*

spliced messenger RNA

>Gcaud2216.t1 ID=Gcaud2216.t1|Name=Gcaud2216.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:16238..17455- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTCTCTACCTTCGACGACGACGTCTCGCTGTCGGCGCTGCCGCC
GTCGCCGTACCGGGCGCCCGCCCCGCCCCAGCGCGTCGTGCCGCCGCCCA
GTAAACCCAACCTCTTCGCCATCCTCAAAGACGCCGTCACGAAGGACATC
ACCCGCATGACCATCCCCGTGCAGTTCAATGAGCCCCTGTCGTTTCTGCA
GCGCCTGGCGGAGGACATCGAGTACCATCACTTGCTCGATACTGCCGCGC
AGCCGGCGTATGCGCAAACGCCGCAGCGCGCCGCGCTCGTCGCCGCCTTT
GTCATCAGCCAGTACTCGTCCACGGCCGCACGCACGTCCAAGCCGTTCAA
TCCGTTGTTGGGGGAGACCTTCGAGCTCGCCCTGCCTCAGCGCGGTGTCG
TGTTTGTTGCCGAGCAGGTTTCGCATCATCCGCCTATGTCCGCCGTGTTT
GCCAAGGGCAAGGGCTGGACCTACCAAACCGCCCATCGCGTCCGCAACAA
GTTCTTAGTCAATGCCATGGAGGCCTGGCCGGAAGGTACCGTTCACATCC
ACTTTGATGACGGAGACCATTTCATGTATGACAAGCCCCACACTTTCATC
AACAACATCTTTTTCGGCAACATGTGGATTGATAGTGCTGGTGCTGTCAC
CATTCGAAACGATCATTTTGTCGCTTCTCTGCTCATGAAACGGGCTTGCA
CCCTTCCTTTCCGTGAGGGCAAGGGTCTTGGCGACACCATTGGCTCCATA
TACTCTGCTAAAGATAGGAGCAAGAAGCCGCTGCGCAAGATCATTGCAAA
CTGGACATCTCACGTACTCGTCGATGGTCATGAGGTGTGGAGAATCTCCC
CGAAACCACCATCATCGCATACAGCCTCCAGCAGCCTCACGTCTTGGGCA
TGGGCACTAAATGCGCCCGTACAAGTTGACTCCAGTATGTCTATTCCCAA
GACTGACTCTCGACGCCGTCCTGACCAGAGGGCGCTTGAGAACGGCGATC
ATGCGCTGGCCACCTCCGAAAAGGCACGATTGGAACAGACGCAGAGGGAG
AGGAGACAGGCCAACGAAAGAGAGAATAAGCTTTTCCAGCCTCAGTGGTT
TGAGCTGCGTCATGAGCCATTGACTGGTCGGAAAGAGTGGAGGTACGGTC
GACAATATTTTGGTCGGAAGAGAGATGCAACCGATGCGTGGCCTCAGGAA
AGTCCAGATATCTTTTAG

protein sequence of Gcaud2216.t1

>Gcaud2216.t1 ID=Gcaud2216.t1|Name=Gcaud2216.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=406bp
MTVSTFDDDVSLSALPPSPYRAPAPPQRVVPPPSKPNLFAILKDAVTKDI
TRMTIPVQFNEPLSFLQRLAEDIEYHHLLDTAAQPAYAQTPQRAALVAAF
VISQYSSTAARTSKPFNPLLGETFELALPQRGVVFVAEQVSHHPPMSAVF
AKGKGWTYQTAHRVRNKFLVNAMEAWPEGTVHIHFDDGDHFMYDKPHTFI
NNIFFGNMWIDSAGAVTIRNDHFVASLLMKRACTLPFREGKGLGDTIGSI
YSAKDRSKKPLRKIIANWTSHVLVDGHEVWRISPKPPSSHTASSSLTSWA
WALNAPVQVDSSMSIPKTDSRRRPDQRALENGDHALATSEKARLEQTQRE
RRQANERENKLFQPQWFELRHEPLTGRKEWRYGRQYFGRKRDATDAWPQE
SPDIF*

mRNA from alignment at NODE_492_length_23814_cov_5.019981:16238..17455-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2216.t1 ID=Gcaud2216.t1|Name=Gcaud2216.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:16238..17455- (Gracilaria caudata M_176_S67 male)
ATGACGGTCTCTACCTTCGACGACGACGTCTCGCTGTCGGCGCTGCCGCC
GTCGCCGTACCGGGCGCCCGCCCCGCCCCAGCGCGTCGTGCCGCCGCCCA
GTAAACCCAACCTCTTCGCCATCCTCAAAGACGCCGTCACGAAGGACATC
ACCCGCATGACCATCCCCGTGCAGTTCAATGAGCCCCTGTCGTTTCTGCA
GCGCCTGGCGGAGGACATCGAGTACCATCACTTGCTCGATACTGCCGCGC
AGCCGGCGTATGCGCAAACGCCGCAGCGCGCCGCGCTCGTCGCCGCCTTT
GTCATCAGCCAGTACTCGTCCACGGCCGCACGCACGTCCAAGCCGTTCAA
TCCGTTGTTGGGGGAGACCTTCGAGCTCGCCCTGCCTCAGCGCGGTGTCG
TGTTTGTTGCCGAGCAGGTTTCGCATCATCCGCCTATGTCCGCCGTGTTT
GCCAAGGGCAAGGGCTGGACCTACCAAACCGCCCATCGCGTCCGCAACAA
GTTCTTAGTCAATGCCATGGAGGCCTGGCCGGAAGGTACCGTTCACATCC
ACTTTGATGACGGAGACCATTTCATGTATGACAAGCCCCACACTTTCATC
AACAACATCTTTTTCGGCAACATGTGGATTGATAGTGCTGGTGCTGTCAC
CATTCGAAACGATCATTTTGTCGCTTCTCTGCTCATGAAACGGGCTTGCA
CCCTTCCTTTCCGTGAGGGCAAGGGTCTTGGCGACACCATTGGCTCCATA
TACTCTGCTAAAGATAGGAGCAAGAAGCCGCTGCGCAAGATCATTGCAAA
CTGGACATCTCACGTACTCGTCGATGGTCATGAGGTGTGGAGAATCTCCC
CGAAACCACCATCATCGCATACAGCCTCCAGCAGCCTCACGTCTTGGGCA
TGGGCACTAAATGCGCCCGTACAAGTTGACTCCAGTATGTCTATTCCCAA
GACTGACTCTCGACGCCGTCCTGACCAGAGGGCGCTTGAGAACGGCGATC
ATGCGCTGGCCACCTCCGAAAAGGCACGATTGGAACAGACGCAGAGGGAG
AGGAGACAGGCCAACGAAAGAGAGAATAAGCTTTTCCAGCCTCAGTGGTT
TGAGCTGCGTCATGAGCCATTGACTGGTCGGAAAGAGTGGAGGTACGGTC
GACAATATTTTGGTCGGAAGAGAGATGCAACCGATGCGTGGCCTCAGGAA
AGTCCAGATATCTTTTAG

Coding sequence (CDS) from alignment at NODE_492_length_23814_cov_5.019981:16238..17455-

>Gcaud2216.t1 ID=Gcaud2216.t1|Name=Gcaud2216.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1218bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:16238..17455- (Gracilaria caudata M_176_S67 male)
ATGACGGTCTCTACCTTCGACGACGACGTCTCGCTGTCGGCGCTGCCGCC
GTCGCCGTACCGGGCGCCCGCCCCGCCCCAGCGCGTCGTGCCGCCGCCCA
GTAAACCCAACCTCTTCGCCATCCTCAAAGACGCCGTCACGAAGGACATC
ACCCGCATGACCATCCCCGTGCAGTTCAATGAGCCCCTGTCGTTTCTGCA
GCGCCTGGCGGAGGACATCGAGTACCATCACTTGCTCGATACTGCCGCGC
AGCCGGCGTATGCGCAAACGCCGCAGCGCGCCGCGCTCGTCGCCGCCTTT
GTCATCAGCCAGTACTCGTCCACGGCCGCACGCACGTCCAAGCCGTTCAA
TCCGTTGTTGGGGGAGACCTTCGAGCTCGCCCTGCCTCAGCGCGGTGTCG
TGTTTGTTGCCGAGCAGGTTTCGCATCATCCGCCTATGTCCGCCGTGTTT
GCCAAGGGCAAGGGCTGGACCTACCAAACCGCCCATCGCGTCCGCAACAA
GTTCTTAGTCAATGCCATGGAGGCCTGGCCGGAAGGTACCGTTCACATCC
ACTTTGATGACGGAGACCATTTCATGTATGACAAGCCCCACACTTTCATC
AACAACATCTTTTTCGGCAACATGTGGATTGATAGTGCTGGTGCTGTCAC
CATTCGAAACGATCATTTTGTCGCTTCTCTGCTCATGAAACGGGCTTGCA
CCCTTCCTTTCCGTGAGGGCAAGGGTCTTGGCGACACCATTGGCTCCATA
TACTCTGCTAAAGATAGGAGCAAGAAGCCGCTGCGCAAGATCATTGCAAA
CTGGACATCTCACGTACTCGTCGATGGTCATGAGGTGTGGAGAATCTCCC
CGAAACCACCATCATCGCATACAGCCTCCAGCAGCCTCACGTCTTGGGCA
TGGGCACTAAATGCGCCCGTACAAGTTGACTCCAGTATGTCTATTCCCAA
GACTGACTCTCGACGCCGTCCTGACCAGAGGGCGCTTGAGAACGGCGATC
ATGCGCTGGCCACCTCCGAAAAGGCACGATTGGAACAGACGCAGAGGGAG
AGGAGACAGGCCAACGAAAGAGAGAATAAGCTTTTCCAGCCTCAGTGGTT
TGAGCTGCGTCATGAGCCATTGACTGGTCGGAAAGAGTGGAGGTACGGTC
GACAATATTTTGGTCGGAAGAGAGATGCAACCGATGCGTGGCCTCAGGAA
AGTCCAGATATCTTTTAG