Gcaud2214.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2214.t1
Unique NameGcaud2214.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_492_length_23814_cov_5.019981contigNODE_492_length_23814_cov_5.019981:7744..8602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A090LXZ0
PFAMsECH_1
Max annot lvl3041|Chlorophyta
KEGG rclassRC01078
KEGG koko:K13238
KEGG ReactionR04756
KEGG Pathwayko00071,map00071
Evalue6.2e-54
EggNOG OGsCOG1024@1|root,KOG1683@2759|Eukaryota,37U6U@33090|Viridiplantae,34HNZ@3041|Chlorophyta
EC5.3.3.8
DescriptionBelongs to the enoyl-CoA hydratase isomerase family
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2214Gcaud2214Gracilaria caudata M_176_S67 malegeneNODE_492_length_23814_cov_5.019981 7744..8602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2214.t1Gcaud2214.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_492_length_23814_cov_5.019981 7744..8602 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2214.t1.stop1Gcaud2214.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_492_length_23814_cov_5.019981 7744..7746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2214.t1.CDS1Gcaud2214.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_492_length_23814_cov_5.019981 7744..8375 -
Gcaud2214.t1.CDS2Gcaud2214.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_492_length_23814_cov_5.019981 8536..8602 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2214.t1.exon1Gcaud2214.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_492_length_23814_cov_5.019981 7744..8375 -
Gcaud2214.t1.exon2Gcaud2214.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_492_length_23814_cov_5.019981 8536..8602 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2214.t1.intron1Gcaud2214.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_492_length_23814_cov_5.019981 8376..8535 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2214.t1.start1Gcaud2214.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_492_length_23814_cov_5.019981 8600..8602 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2214.t1 ID=Gcaud2214.t1|Name=Gcaud2214.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=233bp
LPSTIRHGFCFEVNVTQLQIPQTRGNIFSAGNDLTELHAPSTSKQRFYTF
WKVSTLFLARLYKTPLYTIAALRGATPAGGCVLSLCCDYRVALESTMMGL
NEVAIGLNVPKYYALLLLNLCTVRSEGERMISKGTMINAQRAKRLGLIDD
VVTGDSNQLIHSALRVASKFSDRRETLGRAGTKVEVRRHFADDWENYATE
EAQKGWVKLCEPDVSKRVGYVISQLSARKAKI*
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spliced messenger RNA

>Gcaud2214.t1 ID=Gcaud2214.t1|Name=Gcaud2214.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:7744..8602- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCATCCACGATCCGCCATGGTTTCTGCTTCGAAGTCAACGTCACCCA
GCTTCAAATTCCTCAAACCCGTGGGAACATTTTTTCGGCAGGCAACGATC
TCACTGAATTGCATGCGCCATCCACTTCCAAGCAACGCTTCTATACGTTT
TGGAAAGTATCTACACTATTTCTGGCTCGTCTTTACAAGACTCCGCTCTA
CACAATTGCTGCGCTTCGCGGCGCAACGCCAGCTGGAGGATGTGTTTTGT
CTCTATGCTGTGATTATCGTGTAGCTCTAGAAAGCACCATGATGGGGCTG
AATGAAGTCGCCATCGGTCTCAATGTTCCCAAATACTATGCGCTTCTGCT
CTTGAATCTCTGTACAGTTCGGTCCGAAGGCGAACGCATGATTTCAAAAG
GCACCATGATAAACGCGCAGAGAGCAAAACGGCTTGGCCTCATTGACGAC
GTGGTCACTGGCGATTCAAATCAATTGATTCATTCAGCGCTCCGCGTTGC
AAGCAAGTTCTCCGACAGACGCGAGACACTCGGTCGCGCTGGCACCAAAG
TAGAGGTTAGAAGACACTTTGCAGATGATTGGGAAAACTACGCAACTGAA
GAAGCACAAAAAGGCTGGGTTAAACTTTGTGAACCGGATGTAAGCAAAAG
AGTGGGGTACGTGATTTCGCAATTGAGTGCACGCAAAGCCAAAATTTAG
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protein sequence of Gcaud2214.t1

>Gcaud2214.t1 ID=Gcaud2214.t1|Name=Gcaud2214.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=233bp
LPSTIRHGFCFEVNVTQLQIPQTRGNIFSAGNDLTELHAPSTSKQRFYTF
WKVSTLFLARLYKTPLYTIAALRGATPAGGCVLSLCCDYRVALESTMMGL
NEVAIGLNVPKYYALLLLNLCTVRSEGERMISKGTMINAQRAKRLGLIDD
VVTGDSNQLIHSALRVASKFSDRRETLGRAGTKVEVRRHFADDWENYATE
EAQKGWVKLCEPDVSKRVGYVISQLSARKAKI*
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mRNA from alignment at NODE_492_length_23814_cov_5.019981:7744..8602-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2214.t1 ID=Gcaud2214.t1|Name=Gcaud2214.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=859bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:7744..8602- (Gracilaria caudata M_176_S67 male)
TTGCCATCCACGATCCGCCATGGTTTCTGCTTCGAAGTCAACGTCACCCA
GCTTCAAATTCCTCAAAGTGAGTTACCCAGCAGAAGGAATATGTCATTGT
CAACTTTCACGACCTCCAGTAAACGCGTTTCACACCGCGTTGTGGACGGA
GCTCCTATCACTGCTCACCTTTGTTGAGAAAACCGAGTTTCCCAAGTCCA
CAAGGGTTCTAATCTTTTCCTCTGCAGCCCGTGGGAACATTTTTTCGGCA
GGCAACGATCTCACTGAATTGCATGCGCCATCCACTTCCAAGCAACGCTT
CTATACGTTTTGGAAAGTATCTACACTATTTCTGGCTCGTCTTTACAAGA
CTCCGCTCTACACAATTGCTGCGCTTCGCGGCGCAACGCCAGCTGGAGGA
TGTGTTTTGTCTCTATGCTGTGATTATCGTGTAGCTCTAGAAAGCACCAT
GATGGGGCTGAATGAAGTCGCCATCGGTCTCAATGTTCCCAAATACTATG
CGCTTCTGCTCTTGAATCTCTGTACAGTTCGGTCCGAAGGCGAACGCATG
ATTTCAAAAGGCACCATGATAAACGCGCAGAGAGCAAAACGGCTTGGCCT
CATTGACGACGTGGTCACTGGCGATTCAAATCAATTGATTCATTCAGCGC
TCCGCGTTGCAAGCAAGTTCTCCGACAGACGCGAGACACTCGGTCGCGCT
GGCACCAAAGTAGAGGTTAGAAGACACTTTGCAGATGATTGGGAAAACTA
CGCAACTGAAGAAGCACAAAAAGGCTGGGTTAAACTTTGTGAACCGGATG
TAAGCAAAAGAGTGGGGTACGTGATTTCGCAATTGAGTGCACGCAAAGCC
AAAATTTAG
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Coding sequence (CDS) from alignment at NODE_492_length_23814_cov_5.019981:7744..8602-

>Gcaud2214.t1 ID=Gcaud2214.t1|Name=Gcaud2214.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=699bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:7744..8602- (Gracilaria caudata M_176_S67 male)
TTGCCATCCACGATCCGCCATGGTTTCTGCTTCGAAGTCAACGTCACCCA
GCTTCAAATTCCTCAAACCCGTGGGAACATTTTTTCGGCAGGCAACGATC
TCACTGAATTGCATGCGCCATCCACTTCCAAGCAACGCTTCTATACGTTT
TGGAAAGTATCTACACTATTTCTGGCTCGTCTTTACAAGACTCCGCTCTA
CACAATTGCTGCGCTTCGCGGCGCAACGCCAGCTGGAGGATGTGTTTTGT
CTCTATGCTGTGATTATCGTGTAGCTCTAGAAAGCACCATGATGGGGCTG
AATGAAGTCGCCATCGGTCTCAATGTTCCCAAATACTATGCGCTTCTGCT
CTTGAATCTCTGTACAGTTCGGTCCGAAGGCGAACGCATGATTTCAAAAG
GCACCATGATAAACGCGCAGAGAGCAAAACGGCTTGGCCTCATTGACGAC
GTGGTCACTGGCGATTCAAATCAATTGATTCATTCAGCGCTCCGCGTTGC
AAGCAAGTTCTCCGACAGACGCGAGACACTCGGTCGCGCTGGCACCAAAG
TAGAGGTTAGAAGACACTTTGCAGATGATTGGGAAAACTACGCAACTGAA
GAAGCACAAAAAGGCTGGGTTAAACTTTGTGAACCGGATGTAAGCAAAAG
AGTGGGGTACGTGATTTCGCAATTGAGTGCACGCAAAGCCAAAATTTAG
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