Gcaud2213.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2213.t1
Unique Name	Gcaud2213.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	300

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_492_length_23814_cov_5.019981	contig	NODE_492_length_23814_cov_5.019981:6833..7732 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	50452.A0A087FYK6
Preferred name	OS9
PFAMs	PRKCSH
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10088
KEGG Pathway	ko04141,map04141
KEGG Module	M00403
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006970,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009628,GO:0009651,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0015031,GO:0015833,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0030970,GO:0031974,GO:0032527,GO:0033036,GO:0033554,GO:0034613,GO:0034976,GO:0036503,GO:0042221,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513
Evalue	3.25e-23
EggNOG OGs	KOG3394@1\|root,KOG3394@2759\|Eukaryota,37KJD@33090\|Viridiplantae,3GFW8@35493\|Streptophyta,3HY34@3699\|Brassicales
Description	Glucosidase II beta subunit-like protein
COG category	S
BRITE	ko00000,ko00001,ko00002,ko04091

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2213	Gcaud2213	Gracilaria caudata M_176_S67 male	gene	NODE_492_length_23814_cov_5.019981 6833..7732 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2213.t1.start1	Gcaud2213.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_492_length_23814_cov_5.019981 6833..6835 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2213.t1.CDS1	Gcaud2213.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_492_length_23814_cov_5.019981 6833..7732 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2213.t1.exon1	Gcaud2213.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_492_length_23814_cov_5.019981 6833..7732 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2213.t1.stop1	Gcaud2213.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_492_length_23814_cov_5.019981 7730..7732 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2213.t1	Gcaud2213.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_492_length_23814_cov_5.019981 6833..7732 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_492_length_23814_cov_5.019981:6833..7732+
coding sequence from alignment at NODE_492_length_23814_cov_5.019981:6833..7732+

mRNA sequence

>Gcaud2213.t1 ID=Gcaud2213.t1|Name=Gcaud2213.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp
MCYPVTPVTHALMLLALACLWTSYCCQAQGIPFIIGDVSRRDISRPVYEV
RLPLKGHFRSPQHPPDDPQPPGFTAMSVVTARGQRMRCLLPDLNPSVTPS
VQEHYQSDHVFDDIDSLLSEYEGTCAFKVDGWWTYEFCYGKHVAQKHYGV
EKDGTKAVTDEFVLGYFNKEQDLIRRKNISEVTTDDAAFTQLYTDGTTCD
MTNKPRQVLVKYMCIEDIVSLPGIAERAARGKVAFLNSIREVQSCVYEIE
FFNKAICNHVLYKQKLEGFEKSIHCSLEEGEGPFEGLLADSYQKATLNL*

spliced messenger RNA

>Gcaud2213.t1 ID=Gcaud2213.t1|Name=Gcaud2213.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:6833..7732+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTATCCTGTAACCCCTGTCACTCATGCGCTCATGCTGCTCGCCCT
CGCTTGCCTCTGGACGTCTTATTGTTGCCAAGCACAAGGGATTCCGTTTA
TTATTGGCGACGTTTCGCGCCGTGATATCAGTAGGCCCGTTTACGAGGTC
CGTCTACCATTAAAGGGTCATTTCCGATCCCCACAGCATCCTCCGGATGA
TCCTCAGCCTCCGGGTTTTACCGCAATGAGCGTCGTCACAGCGAGGGGGC
AGAGAATGCGCTGTCTCTTGCCAGATCTAAACCCCTCTGTAACCCCATCG
GTGCAAGAGCATTATCAAAGCGACCACGTATTCGATGACATTGACTCTCT
GTTGAGCGAATATGAGGGCACTTGCGCGTTCAAAGTGGACGGCTGGTGGA
CGTATGAGTTTTGTTATGGCAAGCATGTTGCGCAGAAACATTATGGCGTG
GAAAAAGATGGAACGAAAGCTGTCACCGATGAATTCGTCCTGGGCTATTT
CAACAAAGAACAGGATCTTATCAGAAGAAAGAACATTTCGGAAGTAACGA
CCGACGATGCTGCTTTCACACAGCTTTACACAGACGGCACAACATGTGAT
ATGACCAACAAACCACGGCAAGTGCTCGTAAAGTACATGTGCATCGAAGA
CATTGTATCACTGCCTGGCATTGCCGAACGCGCCGCAAGGGGGAAAGTCG
CGTTTCTCAACTCCATTCGAGAAGTGCAATCCTGCGTGTATGAAATTGAG
TTCTTCAACAAAGCAATATGCAATCATGTCCTGTACAAGCAGAAGCTAGA
AGGCTTCGAGAAGTCTATACACTGTTCACTCGAAGAGGGAGAAGGTCCTT
TCGAAGGGCTACTGGCCGATTCATATCAGAAAGCAACTCTCAACTTGTAA

protein sequence of Gcaud2213.t1

>Gcaud2213.t1 ID=Gcaud2213.t1|Name=Gcaud2213.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=300bp
MCYPVTPVTHALMLLALACLWTSYCCQAQGIPFIIGDVSRRDISRPVYEV
RLPLKGHFRSPQHPPDDPQPPGFTAMSVVTARGQRMRCLLPDLNPSVTPS
VQEHYQSDHVFDDIDSLLSEYEGTCAFKVDGWWTYEFCYGKHVAQKHYGV
EKDGTKAVTDEFVLGYFNKEQDLIRRKNISEVTTDDAAFTQLYTDGTTCD
MTNKPRQVLVKYMCIEDIVSLPGIAERAARGKVAFLNSIREVQSCVYEIE
FFNKAICNHVLYKQKLEGFEKSIHCSLEEGEGPFEGLLADSYQKATLNL*

mRNA from alignment at NODE_492_length_23814_cov_5.019981:6833..7732+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2213.t1 ID=Gcaud2213.t1|Name=Gcaud2213.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=900bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:6833..7732+ (Gracilaria caudata M_176_S67 male)
ATGTGCTATCCTGTAACCCCTGTCACTCATGCGCTCATGCTGCTCGCCCT
CGCTTGCCTCTGGACGTCTTATTGTTGCCAAGCACAAGGGATTCCGTTTA
TTATTGGCGACGTTTCGCGCCGTGATATCAGTAGGCCCGTTTACGAGGTC
CGTCTACCATTAAAGGGTCATTTCCGATCCCCACAGCATCCTCCGGATGA
TCCTCAGCCTCCGGGTTTTACCGCAATGAGCGTCGTCACAGCGAGGGGGC
AGAGAATGCGCTGTCTCTTGCCAGATCTAAACCCCTCTGTAACCCCATCG
GTGCAAGAGCATTATCAAAGCGACCACGTATTCGATGACATTGACTCTCT
GTTGAGCGAATATGAGGGCACTTGCGCGTTCAAAGTGGACGGCTGGTGGA
CGTATGAGTTTTGTTATGGCAAGCATGTTGCGCAGAAACATTATGGCGTG
GAAAAAGATGGAACGAAAGCTGTCACCGATGAATTCGTCCTGGGCTATTT
CAACAAAGAACAGGATCTTATCAGAAGAAAGAACATTTCGGAAGTAACGA
CCGACGATGCTGCTTTCACACAGCTTTACACAGACGGCACAACATGTGAT
ATGACCAACAAACCACGGCAAGTGCTCGTAAAGTACATGTGCATCGAAGA
CATTGTATCACTGCCTGGCATTGCCGAACGCGCCGCAAGGGGGAAAGTCG
CGTTTCTCAACTCCATTCGAGAAGTGCAATCCTGCGTGTATGAAATTGAG
TTCTTCAACAAAGCAATATGCAATCATGTCCTGTACAAGCAGAAGCTAGA
AGGCTTCGAGAAGTCTATACACTGTTCACTCGAAGAGGGAGAAGGTCCTT
TCGAAGGGCTACTGGCCGATTCATATCAGAAAGCAACTCTCAACTTGTAA

Coding sequence (CDS) from alignment at NODE_492_length_23814_cov_5.019981:6833..7732+

>Gcaud2213.t1 ID=Gcaud2213.t1|Name=Gcaud2213.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=900bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:6833..7732+ (Gracilaria caudata M_176_S67 male)
ATGTGCTATCCTGTAACCCCTGTCACTCATGCGCTCATGCTGCTCGCCCT
CGCTTGCCTCTGGACGTCTTATTGTTGCCAAGCACAAGGGATTCCGTTTA
TTATTGGCGACGTTTCGCGCCGTGATATCAGTAGGCCCGTTTACGAGGTC
CGTCTACCATTAAAGGGTCATTTCCGATCCCCACAGCATCCTCCGGATGA
TCCTCAGCCTCCGGGTTTTACCGCAATGAGCGTCGTCACAGCGAGGGGGC
AGAGAATGCGCTGTCTCTTGCCAGATCTAAACCCCTCTGTAACCCCATCG
GTGCAAGAGCATTATCAAAGCGACCACGTATTCGATGACATTGACTCTCT
GTTGAGCGAATATGAGGGCACTTGCGCGTTCAAAGTGGACGGCTGGTGGA
CGTATGAGTTTTGTTATGGCAAGCATGTTGCGCAGAAACATTATGGCGTG
GAAAAAGATGGAACGAAAGCTGTCACCGATGAATTCGTCCTGGGCTATTT
CAACAAAGAACAGGATCTTATCAGAAGAAAGAACATTTCGGAAGTAACGA
CCGACGATGCTGCTTTCACACAGCTTTACACAGACGGCACAACATGTGAT
ATGACCAACAAACCACGGCAAGTGCTCGTAAAGTACATGTGCATCGAAGA
CATTGTATCACTGCCTGGCATTGCCGAACGCGCCGCAAGGGGGAAAGTCG
CGTTTCTCAACTCCATTCGAGAAGTGCAATCCTGCGTGTATGAAATTGAG
TTCTTCAACAAAGCAATATGCAATCATGTCCTGTACAAGCAGAAGCTAGA
AGGCTTCGAGAAGTCTATACACTGTTCACTCGAAGAGGGAGAAGGTCCTT
TCGAAGGGCTACTGGCCGATTCATATCAGAAAGCAACTCTCAACTTGTAA