Gcaud2211.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2211.t1
Unique Name	Gcaud2211.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	656

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_492_length_23814_cov_5.019981	contig	NODE_492_length_23814_cov_5.019981:3192..5159 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2211	Gcaud2211	Gracilaria caudata M_176_S67 male	gene	NODE_492_length_23814_cov_5.019981 3192..5159 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2211.t1.start1	Gcaud2211.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_492_length_23814_cov_5.019981 3192..3194 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2211.t1.CDS1	Gcaud2211.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_492_length_23814_cov_5.019981 3192..5159 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2211.t1.exon1	Gcaud2211.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_492_length_23814_cov_5.019981 3192..5159 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2211.t1.stop1	Gcaud2211.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_492_length_23814_cov_5.019981 5157..5159 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2211.t1	Gcaud2211.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_492_length_23814_cov_5.019981 3192..5159 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_492_length_23814_cov_5.019981:3192..5159+
coding sequence from alignment at NODE_492_length_23814_cov_5.019981:3192..5159+

mRNA sequence

>Gcaud2211.t1 ID=Gcaud2211.t1|Name=Gcaud2211.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=656bp
MIRDDNNDLDPPSPPRHAPPPPQPRGAFILSLWIPFDVWSRIAAYLTSVS
DLNSFLKVCRAAYNAVCTTQAPFHKSVCHHFRRCQFYIPADLVDKVLMAH
VVPPDGKSLVIFLDETQSGNGVELAWIRDTHIRRVQLGLDTVSASTVSNI
RFSPDGSRIAFLITLAHGNLIAEDIDPLHRLRGWESHTEIRGQPHDVSYE
PCEDCTVQIVSLVSDSLGYPNDLIVHTFTHVFVPEYGFDMVWRGTTQKPE
LAFAAMLHSTAGAATYLVRWKTFASPAETNFVFMACIDGASIELLHDKRS
AMLNYESTRCTSRIELGKDAQFIFFDTISKFGVLRFDQVENAESAKVTRA
DLPNDPIVSRACCAPSAMKPGTREQHNRREEESSTEKSDVCHLQAHDGGE
HSHFHNDEVARTSRMAPNGKLLCSVVCVHCGPHGRNGKRISQRHIEMRSS
VSGRLLYRQLIPRTFNTSRHRMKRIRIPYEKSDHVTRNTIGFSEDSRLLV
IWDTLFTNVQVVASKRLPHVYEAETGRLVQDFNEIASTVSYDQVQTAPDV
LTFYGTRWTKGKVIMDAIDVVSGRVLKTEVLADGFGAAAQFSSDSVYILP
NQNLVATSRGKLDSFWETTRGALGCGWRSERRRAPFCSRYDSMVRRKQPT
ITEMS*

spliced messenger RNA

>Gcaud2211.t1 ID=Gcaud2211.t1|Name=Gcaud2211.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1968bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:3192..5159+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGCGATGACAACAACGATCTcgacccgccctccccacctcgcca
tgccccgccgcccccgcagccgcgcggcgccTTCATTCTCTCGCTCTGGA
TCCCGTTCGACGTCTGGTCGCGAATCGCCGCCTATCTCACCTCCGTCTCC
GACCTGAACTCCTTCCTCAAGGTCTGCCGCGCCGCGTACAACGCCGTATG
CACCACGCAGGCGCCGTTCCACAAGTCCGTTTGCCATCACTTTCGCCGAT
GCCAGTTTTACATCCCTGCAGACCTCGTCGACAAAGTCCTCATGGCCCAC
GTCGTCCCTCCGGACGGAAAGAGTCTCGTCATATTTCTCGATGAGACCCA
ATCTGGAAACGGAGTGGAGCTCGCTTGGATCCGTGACACCCATATTCGCC
GTGTCCAGCTTGGTTTGGACACCGTATCGGCCAGCACCGTCAGCAACATT
CGCTTCTCGCCGGACGGCTCTCGTATAGCATTTCTCATCACACTGGCCCA
TGGAAATCTCATCGCAGAGGATATCGATCCCTTGCACCGCCTCCGAGGCT
GGGAATCACATACCGAAATACGAGGTCAGCCGCACGATGTTTCCTACGAA
CCGTGCGAGGACTGCACCGTTCAAATAGTGTCACTTGTATCAGATAGTCT
GGGTTATCCGAATGATCTCATAGTACACACATTCACGCATGTCTTTGTGC
CGGAATACGGCTTTGATATGGTATGGAGAGGCACGACACAAAAGCCTGAG
CTTGCTTTCGCAGCCATGCTGCATTCCACAGCGGGGGCAGCCACATACCT
CGTCAGATGGAAAACGTTTGCTTCCCCTGCTGAAACCAATTTTGTTTTCA
TGGCCTGTATTGACGGTGCGAGCATTGAGTTGCTACATGACAAGCGGTCT
GCAATGTTGAATTACGAATCCACCCGTTGCACCTCAAGAATTGAGCTGGG
CAAGGATGCCCAGTTCATCTTCTTTGATACTATTTCCAAGTTTGGTGTTC
TGAGATTTGACCAGGTGGAAAATGCTGAATCCGCGAAGGTGACAAGGGCA
GACCTTCCAAATGATCCGATTGTTTCTCGAGCATGCTGTGCTCCCTCGGC
GATGAAACCCGGAACTAGAGAACAACATAATCGCCGTGAAGAGGAATCAA
GCACCGAGAAATCGGATGTATGCCATTTGCAAGCTCATGATGGCGGAGAA
CATTCTCATTTTCATAACGATGAAGTGGCTCGTACAAGCAGGATGGCACC
GAACGGAAAACTTCTTTGCTCCGTAGTCTGCGTACACTGCGGTCCACATG
GAAGGAATGGCAAACGCATTTCCCAACGTCACATTGAAATGCGTTCCAGC
GTTAGCGGTCGATTGTTATATCGTCAACTGATCCCCCGAACCTTTAACAC
ATCTCGACACAGGATGAAGCGCATTCGAATTCCGTATGAAAAGTCCGACC
ACGTTACAAGGAATACCATCGGCTTCTCAGAAGATTCACGTCTTCTTGTC
ATATGGGATACCTTGTTTACAAACGTTCAGGTAGTAGCCTCAAAGAGACT
CCCACATGTGTATGAGGCCGAAACTGGTCGTTTGGTCCAAGACTTTAACG
AAATTGCATCCACCGTCTCATACGACCAGGTACAAACAGCACCAGACGTT
CTTACCTTCTATGGCACTAGATGGACGAAAGGGAAGGTGATTATGGATGC
TATCGATGTAGTTTCTGGTCGCGTTTTGAAAACCGAGGTTCTGGCGGATG
GCTTTGGAGCGGCGGCCCAATTTTCTTCTGACTCTGTGTACATATTACCA
AACCAGAACCTCGTTGCCACGTCAAGGGGAAAACTAGACAGCTTCTGGGA
AACCACACGAGGGGCTCTTGGATGCGGATGGAGATCCGAGAGGAGGAGAG
CTCCGTTTTGCTCAAGATATGATTCTATGGTGAGGAGGAAACAACCTACT
ATCACTGAAATGAGCTAA

protein sequence of Gcaud2211.t1

>Gcaud2211.t1 ID=Gcaud2211.t1|Name=Gcaud2211.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=656bp
MIRDDNNDLDPPSPPRHAPPPPQPRGAFILSLWIPFDVWSRIAAYLTSVS
DLNSFLKVCRAAYNAVCTTQAPFHKSVCHHFRRCQFYIPADLVDKVLMAH
VVPPDGKSLVIFLDETQSGNGVELAWIRDTHIRRVQLGLDTVSASTVSNI
RFSPDGSRIAFLITLAHGNLIAEDIDPLHRLRGWESHTEIRGQPHDVSYE
PCEDCTVQIVSLVSDSLGYPNDLIVHTFTHVFVPEYGFDMVWRGTTQKPE
LAFAAMLHSTAGAATYLVRWKTFASPAETNFVFMACIDGASIELLHDKRS
AMLNYESTRCTSRIELGKDAQFIFFDTISKFGVLRFDQVENAESAKVTRA
DLPNDPIVSRACCAPSAMKPGTREQHNRREEESSTEKSDVCHLQAHDGGE
HSHFHNDEVARTSRMAPNGKLLCSVVCVHCGPHGRNGKRISQRHIEMRSS
VSGRLLYRQLIPRTFNTSRHRMKRIRIPYEKSDHVTRNTIGFSEDSRLLV
IWDTLFTNVQVVASKRLPHVYEAETGRLVQDFNEIASTVSYDQVQTAPDV
LTFYGTRWTKGKVIMDAIDVVSGRVLKTEVLADGFGAAAQFSSDSVYILP
NQNLVATSRGKLDSFWETTRGALGCGWRSERRRAPFCSRYDSMVRRKQPT
ITEMS*

mRNA from alignment at NODE_492_length_23814_cov_5.019981:3192..5159+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2211.t1 ID=Gcaud2211.t1|Name=Gcaud2211.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1968bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:3192..5159+ (Gracilaria caudata M_176_S67 male)
ATGATTCGCGATGACAACAACGATCTcgacccgccctccccacctcgcca
tgccccgccgcccccgcagccgcgcggcgccTTCATTCTCTCGCTCTGGA
TCCCGTTCGACGTCTGGTCGCGAATCGCCGCCTATCTCACCTCCGTCTCC
GACCTGAACTCCTTCCTCAAGGTCTGCCGCGCCGCGTACAACGCCGTATG
CACCACGCAGGCGCCGTTCCACAAGTCCGTTTGCCATCACTTTCGCCGAT
GCCAGTTTTACATCCCTGCAGACCTCGTCGACAAAGTCCTCATGGCCCAC
GTCGTCCCTCCGGACGGAAAGAGTCTCGTCATATTTCTCGATGAGACCCA
ATCTGGAAACGGAGTGGAGCTCGCTTGGATCCGTGACACCCATATTCGCC
GTGTCCAGCTTGGTTTGGACACCGTATCGGCCAGCACCGTCAGCAACATT
CGCTTCTCGCCGGACGGCTCTCGTATAGCATTTCTCATCACACTGGCCCA
TGGAAATCTCATCGCAGAGGATATCGATCCCTTGCACCGCCTCCGAGGCT
GGGAATCACATACCGAAATACGAGGTCAGCCGCACGATGTTTCCTACGAA
CCGTGCGAGGACTGCACCGTTCAAATAGTGTCACTTGTATCAGATAGTCT
GGGTTATCCGAATGATCTCATAGTACACACATTCACGCATGTCTTTGTGC
CGGAATACGGCTTTGATATGGTATGGAGAGGCACGACACAAAAGCCTGAG
CTTGCTTTCGCAGCCATGCTGCATTCCACAGCGGGGGCAGCCACATACCT
CGTCAGATGGAAAACGTTTGCTTCCCCTGCTGAAACCAATTTTGTTTTCA
TGGCCTGTATTGACGGTGCGAGCATTGAGTTGCTACATGACAAGCGGTCT
GCAATGTTGAATTACGAATCCACCCGTTGCACCTCAAGAATTGAGCTGGG
CAAGGATGCCCAGTTCATCTTCTTTGATACTATTTCCAAGTTTGGTGTTC
TGAGATTTGACCAGGTGGAAAATGCTGAATCCGCGAAGGTGACAAGGGCA
GACCTTCCAAATGATCCGATTGTTTCTCGAGCATGCTGTGCTCCCTCGGC
GATGAAACCCGGAACTAGAGAACAACATAATCGCCGTGAAGAGGAATCAA
GCACCGAGAAATCGGATGTATGCCATTTGCAAGCTCATGATGGCGGAGAA
CATTCTCATTTTCATAACGATGAAGTGGCTCGTACAAGCAGGATGGCACC
GAACGGAAAACTTCTTTGCTCCGTAGTCTGCGTACACTGCGGTCCACATG
GAAGGAATGGCAAACGCATTTCCCAACGTCACATTGAAATGCGTTCCAGC
GTTAGCGGTCGATTGTTATATCGTCAACTGATCCCCCGAACCTTTAACAC
ATCTCGACACAGGATGAAGCGCATTCGAATTCCGTATGAAAAGTCCGACC
ACGTTACAAGGAATACCATCGGCTTCTCAGAAGATTCACGTCTTCTTGTC
ATATGGGATACCTTGTTTACAAACGTTCAGGTAGTAGCCTCAAAGAGACT
CCCACATGTGTATGAGGCCGAAACTGGTCGTTTGGTCCAAGACTTTAACG
AAATTGCATCCACCGTCTCATACGACCAGGTACAAACAGCACCAGACGTT
CTTACCTTCTATGGCACTAGATGGACGAAAGGGAAGGTGATTATGGATGC
TATCGATGTAGTTTCTGGTCGCGTTTTGAAAACCGAGGTTCTGGCGGATG
GCTTTGGAGCGGCGGCCCAATTTTCTTCTGACTCTGTGTACATATTACCA
AACCAGAACCTCGTTGCCACGTCAAGGGGAAAACTAGACAGCTTCTGGGA
AACCACACGAGGGGCTCTTGGATGCGGATGGAGATCCGAGAGGAGGAGAG
CTCCGTTTTGCTCAAGATATGATTCTATGGTGAGGAGGAAACAACCTACT
ATCACTGAAATGAGCTAA

Coding sequence (CDS) from alignment at NODE_492_length_23814_cov_5.019981:3192..5159+

>Gcaud2211.t1 ID=Gcaud2211.t1|Name=Gcaud2211.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1968bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:3192..5159+ (Gracilaria caudata M_176_S67 male)
ATGATTCGCGATGACAACAACGATCTcgacccgccctccccacctcgcca
tgccccgccgcccccgcagccgcgcggcgccTTCATTCTCTCGCTCTGGA
TCCCGTTCGACGTCTGGTCGCGAATCGCCGCCTATCTCACCTCCGTCTCC
GACCTGAACTCCTTCCTCAAGGTCTGCCGCGCCGCGTACAACGCCGTATG
CACCACGCAGGCGCCGTTCCACAAGTCCGTTTGCCATCACTTTCGCCGAT
GCCAGTTTTACATCCCTGCAGACCTCGTCGACAAAGTCCTCATGGCCCAC
GTCGTCCCTCCGGACGGAAAGAGTCTCGTCATATTTCTCGATGAGACCCA
ATCTGGAAACGGAGTGGAGCTCGCTTGGATCCGTGACACCCATATTCGCC
GTGTCCAGCTTGGTTTGGACACCGTATCGGCCAGCACCGTCAGCAACATT
CGCTTCTCGCCGGACGGCTCTCGTATAGCATTTCTCATCACACTGGCCCA
TGGAAATCTCATCGCAGAGGATATCGATCCCTTGCACCGCCTCCGAGGCT
GGGAATCACATACCGAAATACGAGGTCAGCCGCACGATGTTTCCTACGAA
CCGTGCGAGGACTGCACCGTTCAAATAGTGTCACTTGTATCAGATAGTCT
GGGTTATCCGAATGATCTCATAGTACACACATTCACGCATGTCTTTGTGC
CGGAATACGGCTTTGATATGGTATGGAGAGGCACGACACAAAAGCCTGAG
CTTGCTTTCGCAGCCATGCTGCATTCCACAGCGGGGGCAGCCACATACCT
CGTCAGATGGAAAACGTTTGCTTCCCCTGCTGAAACCAATTTTGTTTTCA
TGGCCTGTATTGACGGTGCGAGCATTGAGTTGCTACATGACAAGCGGTCT
GCAATGTTGAATTACGAATCCACCCGTTGCACCTCAAGAATTGAGCTGGG
CAAGGATGCCCAGTTCATCTTCTTTGATACTATTTCCAAGTTTGGTGTTC
TGAGATTTGACCAGGTGGAAAATGCTGAATCCGCGAAGGTGACAAGGGCA
GACCTTCCAAATGATCCGATTGTTTCTCGAGCATGCTGTGCTCCCTCGGC
GATGAAACCCGGAACTAGAGAACAACATAATCGCCGTGAAGAGGAATCAA
GCACCGAGAAATCGGATGTATGCCATTTGCAAGCTCATGATGGCGGAGAA
CATTCTCATTTTCATAACGATGAAGTGGCTCGTACAAGCAGGATGGCACC
GAACGGAAAACTTCTTTGCTCCGTAGTCTGCGTACACTGCGGTCCACATG
GAAGGAATGGCAAACGCATTTCCCAACGTCACATTGAAATGCGTTCCAGC
GTTAGCGGTCGATTGTTATATCGTCAACTGATCCCCCGAACCTTTAACAC
ATCTCGACACAGGATGAAGCGCATTCGAATTCCGTATGAAAAGTCCGACC
ACGTTACAAGGAATACCATCGGCTTCTCAGAAGATTCACGTCTTCTTGTC
ATATGGGATACCTTGTTTACAAACGTTCAGGTAGTAGCCTCAAAGAGACT
CCCACATGTGTATGAGGCCGAAACTGGTCGTTTGGTCCAAGACTTTAACG
AAATTGCATCCACCGTCTCATACGACCAGGTACAAACAGCACCAGACGTT
CTTACCTTCTATGGCACTAGATGGACGAAAGGGAAGGTGATTATGGATGC
TATCGATGTAGTTTCTGGTCGCGTTTTGAAAACCGAGGTTCTGGCGGATG
GCTTTGGAGCGGCGGCCCAATTTTCTTCTGACTCTGTGTACATATTACCA
AACCAGAACCTCGTTGCCACGTCAAGGGGAAAACTAGACAGCTTCTGGGA
AACCACACGAGGGGCTCTTGGATGCGGATGGAGATCCGAGAGGAGGAGAG
CTCCGTTTTGCTCAAGATATGATTCTATGGTGAGGAGGAAACAACCTACT
ATCACTGAAATGAGCTAA