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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 130081.XP_005706624.1 |
| Preferred name | UBC4 |
| PFAMs | UQ_con |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K10576 |
| KEGG Pathway | ko04120,map04120 |
| GOs | GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006111,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031625,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043255,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062012,GO:0062014,GO:0065007,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575 |
| Evalue | 3.74e-90 |
| EggNOG OGs | KOG0416@1|root,KOG0416@2759|Eukaryota |
| EC | 2.3.2.23 |
| Description | ubiquitin protein ligase binding |
| COG category | O |
| BRITE | ko00000,ko00001,ko01000,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2210.t1.stop1 | Gcaud2210.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_492_length_23814_cov_5.019981 1517..1519 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud2210.t1.start1 | Gcaud2210.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_492_length_23814_cov_5.019981 2532..2534 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2210.t1 ID=Gcaud2210.t1|Name=Gcaud2210.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=211bp
MASPGKRRETDLMKLMMADYEIQMADGDRVGEFFVKFHGPKSTPYEGGVW
KVHVELPDAYPYKSPSIGFINRLYHPNVDEMSGSVCLDVINQSWSPMYDL
TNIFEVFLPQLLTYPNPTDPLNGEAAALQMREPERYKQKVIEYVQKYAKP
EDFPTGDTANGEDDDDASNFSMSESEGEAADDILDDDEDGALAPLSVADE
KDLDGEAAQR* back to topspliced messenger RNA >Gcaud2210.t1 ID=Gcaud2210.t1|Name=Gcaud2210.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=633bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:1517..2534- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGTCGCCTGGAAAGCGGAGAGAGACAGATCTTATGAAGCTTATGAT
GGCTGATTACGAAATTCAGATGGCTGATGGCGACCGCGTGGGCGAGTTCT
TCGTCAAGTTTCATGGTCCCAAGTCCACGCCTTACGAGGGTGGCGTATGG
AAAGTGCACGTCGAACTTCCCGACGCTTACCCGTACAAGAGCCCCAGCAT
CGGCTTTATCAATAGACTCTACCACCCTAATGTGGATGAGATGTCTGGCA
GTGTGTGCCTCGACGTTATAAACCAGTCATGGAGTCCCATGTACGATCTT
ACTAACATTTTTGAAGTCTTTTTGCCTCAGCTCCTCACCTATCCGAATCC
TACCGATCCACTCAACGGAGAGGCTGCAGCTCTACAAATGAGAGAGCCCG
AACGCTACAAGCAGAAAGTCATCGAATACGTGCAAAAGTATGCCAAGCCA
GAGGATTTCCCCACAGGAGACACCGCCAATGGAGAAGACGATGACGACGC
ATCCAACTTTTCCATGAGCGAGTCTGAGGGTGAGGCGGCTGATGACATTC
TCGATGATGACGAAGATGGTGCTCTCGCTCCTCTCTCTGTTGCAGACGAG
AAGGACCTCGACGGCGAGGCTGCTCAGCGATAG back to topprotein sequence of Gcaud2210.t1 >Gcaud2210.t1 ID=Gcaud2210.t1|Name=Gcaud2210.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=211bp
MASPGKRRETDLMKLMMADYEIQMADGDRVGEFFVKFHGPKSTPYEGGVW
KVHVELPDAYPYKSPSIGFINRLYHPNVDEMSGSVCLDVINQSWSPMYDL
TNIFEVFLPQLLTYPNPTDPLNGEAAALQMREPERYKQKVIEYVQKYAKP
EDFPTGDTANGEDDDDASNFSMSESEGEAADDILDDDEDGALAPLSVADE
KDLDGEAAQR* back to topmRNA from alignment at NODE_492_length_23814_cov_5.019981:1517..2534- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2210.t1 ID=Gcaud2210.t1|Name=Gcaud2210.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1018bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:1517..2534- (Gracilaria caudata M_176_S67 male)
ATGGCGTCGCCTGGAAAGCGGAGAGAGACAGATCTTATGAAGCTGTATGT
ATGCCCGCTCCTGCTGCGCTATGCTCGAAGCTCGCCCTTCTCCCGCAGCG
CCCTTTTTTCGATGTCGCCCTTGTTTTGCTCTCACGACCGCATCTAACCC
GTCCTCACTCTGCTTTGTGTGCATCTCCCACGCCTCCTGCAGTATGATGG
CTGATTACGAAATTCAGATGGCTGATGGCGACCGCGTGGGCGAGTTCTTC
GTCAAGTTTCATGGTCCCAAGTCCAGTACGTTTTTCTTCAACAACCATTT
CGGGTTGCGCCCCTTCCGCCCTTTACTGACATATATGTCTTGCTCGGTTG
CATTGCGTTTGTCTTTTTAGCGCCTTACGAGGGTGGCGTATGGAAAGTGC
ACGTCGAACTTCCCGACGCTTACCCGTACAAGAGCCCCAGCATCGGCTTT
ATCAATAGACTCTACCACCCTAATGTGGATGAGATGTAAGTTGCACTTTG
CGCGTCGCTCAGTGGGGTCCTCTCTACCGGTCCGTGCTGACTTATATGTG
TTTTTTTGCAACCTCGCTTTGCTTGCGTTTTTCGCCTCTCTCAAACGCCG
CTTAATTGCTTGTTCGTCGCGAGCAAGGTCTGGCAGTGTGTGCCTCGACG
TTATAAACCAGTCATGGAGTCCCATGTACGATCTTACTAACATTTTTGAA
GTCTTTTTGCCTCAGCTCCTCACCTATCCGAATCCTACCGATCCACTCAA
CGGAGAGGCTGCAGCTCTACAAATGAGAGAGCCCGAACGCTACAAGCAGA
AAGTCATCGAATACGTGCAAAAGTATGCCAAGCCAGAGGATTTCCCCACA
GGAGACACCGCCAATGGAGAAGACGATGACGACGCATCCAACTTTTCCAT
GAGCGAGTCTGAGGGTGAGGCGGCTGATGACATTCTCGATGATGACGAAG
ATGGTGCTCTCGCTCCTCTCTCTGTTGCAGACGAGAAGGACCTCGACGGC
GAGGCTGCTCAGCGATAG back to topCoding sequence (CDS) from alignment at NODE_492_length_23814_cov_5.019981:1517..2534- >Gcaud2210.t1 ID=Gcaud2210.t1|Name=Gcaud2210.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=633bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:1517..2534- (Gracilaria caudata M_176_S67 male)
ATGGCGTCGCCTGGAAAGCGGAGAGAGACAGATCTTATGAAGCTTATGAT
GGCTGATTACGAAATTCAGATGGCTGATGGCGACCGCGTGGGCGAGTTCT
TCGTCAAGTTTCATGGTCCCAAGTCCACGCCTTACGAGGGTGGCGTATGG
AAAGTGCACGTCGAACTTCCCGACGCTTACCCGTACAAGAGCCCCAGCAT
CGGCTTTATCAATAGACTCTACCACCCTAATGTGGATGAGATGTCTGGCA
GTGTGTGCCTCGACGTTATAAACCAGTCATGGAGTCCCATGTACGATCTT
ACTAACATTTTTGAAGTCTTTTTGCCTCAGCTCCTCACCTATCCGAATCC
TACCGATCCACTCAACGGAGAGGCTGCAGCTCTACAAATGAGAGAGCCCG
AACGCTACAAGCAGAAAGTCATCGAATACGTGCAAAAGTATGCCAAGCCA
GAGGATTTCCCCACAGGAGACACCGCCAATGGAGAAGACGATGACGACGC
ATCCAACTTTTCCATGAGCGAGTCTGAGGGTGAGGCGGCTGATGACATTC
TCGATGATGACGAAGATGGTGCTCTCGCTCCTCTCTCTGTTGCAGACGAG
AAGGACCTCGACGGCGAGGCTGCTCAGCGATAG back to top
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