Gcaud2209.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2209.t1
Unique Name	Gcaud2209.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:75768..77390 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15715739
Preferred name	ELAC1
PFAMs	Lactamase_B,Lactamase_B_2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K00784
KEGG Pathway	ko03013,map03013
GOs	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043628,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267
Evalue	6.22e-36
EggNOG OGs	COG1234@1\|root,KOG2121@2759\|Eukaryota,38EKA@33154\|Opisthokonta,3BK5I@33208\|Metazoa
EC	3.1.26.11
Description	3'-tRNA processing endoribonuclease activity
COG category	S
BRITE	ko00000,ko00001,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2209	Gcaud2209	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 75768..77390 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2209.t1.start1	Gcaud2209.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 75768..75770 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2209.t1.CDS1	Gcaud2209.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 75768..77390 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2209.t1.exon1	Gcaud2209.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 75768..77390 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2209.t1.stop1	Gcaud2209.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 77388..77390 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2209.t1	Gcaud2209.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 75768..77390 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:75768..77390+
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:75768..77390+

mRNA sequence

>Gcaud2209.t1 ID=Gcaud2209.t1|Name=Gcaud2209.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=541bp
MFSYYALRATRRLSLRHRGFLRLQSEQITPTLSRVRTKCTYLSEPLTPAG
TGGFELTFLGTSSQGGARRYPSSLAVRLRGAASSEVWVFDAGEGAMAQLQ
RSNMRVGLVRNIFISHLHGDHLYGLPGLVMSILGRREIFNKQGDATLNVY
GPQGIRGFLRMALGVASFRIPGKGALRINELIWPDEFGPRCLQNKHRNGS
AYWKHSIKRLPFEMAGRDIIPERDAQGQYTYEVTGEENGNKDNTNSKRRW
LGSGPATVVAAPVLHTVPTFAYGVTENVVSQRFDKGKLLELGIPTDGREE
VRVLFEQWLVGERGIWQGKEIPIEQVLQNGRRPRTLCIIGDTYDAAGAAH
IAKSVDVLVHEATNMAAGTHTARSRGHSSTVGASSFARRVGARRLILNHA
SVSYSERKIRAMETEARGMFGANKAFVARDLSVFNIPTCEEDDDDFAFRR
FVGFADSLEFKSPQETPFTPDFVVDRGEEGSVQDEDFDSDSLKADDYSDD
HDEEDTSVLLDAREHSAVTEEIDIHSSMFREPERQSILTV*

spliced messenger RNA

>Gcaud2209.t1 ID=Gcaud2209.t1|Name=Gcaud2209.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:75768..77390+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCGTACTATGCCCTGCGAGCAACGAGACGGTTGTCATTGAGACA
TCGTGGTTTCTTGCGTTTGCAAAGCGAACAAATCACACCCACTTTGTCGA
GAGTTAGAACGAAGTGTACCTATTTGAGCGAGCCGCTGACGCCTGCAGGG
ACCGGAGGATTTGAACTTACTTTCCTGGGAACCAGTTCCCAAGGTGGTGC
GCGTCGATATCCATCATCATTGGCAGTGCGATTGCGCGGAGCTGCCAGCT
CTGAAGTATGGGTTTTCGATGCGGGAGAAGGCGCCATGGCTCAGCTTCAA
CGTTCCAACATGCGAGTGGGACTGGTTCGCAACATTTTCATATCTCACTT
ACACGGAGATCACCTATACGGTCTTCCTGGGCTGGTCATGTCAATTCTAG
GACGTCGCGAGATATTCAACAAGCAAGGAGACGCAACCCTCAATGTTTAC
GGACCGCAGGGTATTAGAGGGTTTCTACGCATGGCTCTTGGAGTTGCAAG
TTTTCGGATCCCGGGCAAAGGTGCTCTCAGAATTAATGAGTTGATCTGGC
CCGACGAGTTTGGTCCACGTTGTTTGCAGAATAAACACCGAAACGGGAGT
GCGTATTGGAAACATTCCATTAAGAGACTTCCCTTTGAGATGGCTGGTAG
GGATATCATCCCTGAAAGAGACGCCCAAGGGCAATACACATATGAAGTAA
CGGGAGAGGAAAATGGTAACAAGGACAATACGAATTCAAAACGACGATGG
CTTGGCAGCGGGCCTGCAACAGTAGTCGCGGCTCCGGTGCTGCACACTGT
TCCAACATTTGCTTACGGTGTGACCGAGAACGTCGTGAGTCAGCGATTTG
ACAAAGGAAAACTCCTTGAGCTTGGAATCCCAACAGATGGTCGGGAAGAA
GTACGCGTTCTGTTCGAGCAATGGCTGGTGGGGGAAAGAGGAATCTGGCA
AGGTAAAGAGATCCCCATTGAACAAGTTTTACAGAATGGAAGGAGACCGA
GAACACTTTGTATTATAGGAGACACTTATGACGCAGCTGGGGCCGCCCAT
ATTGCTAAGAGCGTTGACGTTTTGGTGCATGAAGCAACGAATATGGCCGC
TGGGACTCATACTGCGAGGAGTCGAGGACATTCTTCCACTGTGGGTGCCA
GCTCTTTTGCCAGAAGAGTTGGCGCAAGACGACTGATACTTAACCACGCA
AGTGTTTCGTACAGTGAACGTAAAATCAGAGCGATGGAAACAGAAGCAAG
GGGAATGTTTGGAGCTAACAAAGCGTTCGTGGCGAGGGACCTAAGTGTAT
TTAATATACCAACTTGCGAAGAGGATGATGATGATTTCGCGTTTAGGAGG
TTTGTCGGTTTTGCTGACTCATTAGAATTCAAGTCGCCCCAAGAAACTCC
ATTCACTCCCGATTTCGTGGTTGACAGAGGTGAAGAGGGGTCGGTACAAG
ATGAAGATTTTGATTCTGATTCACTCAAAGCGGATGATTATTCTGATGAC
CATGATGAAGAGGATACGTCTGTGCTTTTAGATGCTCGTGAACATTCGGC
CGTGACTGAGGAAATAGATATTCATAGCAGTATGTTTCGGGAACCGGAAA
GACAATCCATCTTGACCGTATGA

protein sequence of Gcaud2209.t1

>Gcaud2209.t1 ID=Gcaud2209.t1|Name=Gcaud2209.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=541bp
MFSYYALRATRRLSLRHRGFLRLQSEQITPTLSRVRTKCTYLSEPLTPAG
TGGFELTFLGTSSQGGARRYPSSLAVRLRGAASSEVWVFDAGEGAMAQLQ
RSNMRVGLVRNIFISHLHGDHLYGLPGLVMSILGRREIFNKQGDATLNVY
GPQGIRGFLRMALGVASFRIPGKGALRINELIWPDEFGPRCLQNKHRNGS
AYWKHSIKRLPFEMAGRDIIPERDAQGQYTYEVTGEENGNKDNTNSKRRW
LGSGPATVVAAPVLHTVPTFAYGVTENVVSQRFDKGKLLELGIPTDGREE
VRVLFEQWLVGERGIWQGKEIPIEQVLQNGRRPRTLCIIGDTYDAAGAAH
IAKSVDVLVHEATNMAAGTHTARSRGHSSTVGASSFARRVGARRLILNHA
SVSYSERKIRAMETEARGMFGANKAFVARDLSVFNIPTCEEDDDDFAFRR
FVGFADSLEFKSPQETPFTPDFVVDRGEEGSVQDEDFDSDSLKADDYSDD
HDEEDTSVLLDAREHSAVTEEIDIHSSMFREPERQSILTV*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:75768..77390+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2209.t1 ID=Gcaud2209.t1|Name=Gcaud2209.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:75768..77390+ (Gracilaria caudata M_176_S67 male)
ATGTTTTCGTACTATGCCCTGCGAGCAACGAGACGGTTGTCATTGAGACA
TCGTGGTTTCTTGCGTTTGCAAAGCGAACAAATCACACCCACTTTGTCGA
GAGTTAGAACGAAGTGTACCTATTTGAGCGAGCCGCTGACGCCTGCAGGG
ACCGGAGGATTTGAACTTACTTTCCTGGGAACCAGTTCCCAAGGTGGTGC
GCGTCGATATCCATCATCATTGGCAGTGCGATTGCGCGGAGCTGCCAGCT
CTGAAGTATGGGTTTTCGATGCGGGAGAAGGCGCCATGGCTCAGCTTCAA
CGTTCCAACATGCGAGTGGGACTGGTTCGCAACATTTTCATATCTCACTT
ACACGGAGATCACCTATACGGTCTTCCTGGGCTGGTCATGTCAATTCTAG
GACGTCGCGAGATATTCAACAAGCAAGGAGACGCAACCCTCAATGTTTAC
GGACCGCAGGGTATTAGAGGGTTTCTACGCATGGCTCTTGGAGTTGCAAG
TTTTCGGATCCCGGGCAAAGGTGCTCTCAGAATTAATGAGTTGATCTGGC
CCGACGAGTTTGGTCCACGTTGTTTGCAGAATAAACACCGAAACGGGAGT
GCGTATTGGAAACATTCCATTAAGAGACTTCCCTTTGAGATGGCTGGTAG
GGATATCATCCCTGAAAGAGACGCCCAAGGGCAATACACATATGAAGTAA
CGGGAGAGGAAAATGGTAACAAGGACAATACGAATTCAAAACGACGATGG
CTTGGCAGCGGGCCTGCAACAGTAGTCGCGGCTCCGGTGCTGCACACTGT
TCCAACATTTGCTTACGGTGTGACCGAGAACGTCGTGAGTCAGCGATTTG
ACAAAGGAAAACTCCTTGAGCTTGGAATCCCAACAGATGGTCGGGAAGAA
GTACGCGTTCTGTTCGAGCAATGGCTGGTGGGGGAAAGAGGAATCTGGCA
AGGTAAAGAGATCCCCATTGAACAAGTTTTACAGAATGGAAGGAGACCGA
GAACACTTTGTATTATAGGAGACACTTATGACGCAGCTGGGGCCGCCCAT
ATTGCTAAGAGCGTTGACGTTTTGGTGCATGAAGCAACGAATATGGCCGC
TGGGACTCATACTGCGAGGAGTCGAGGACATTCTTCCACTGTGGGTGCCA
GCTCTTTTGCCAGAAGAGTTGGCGCAAGACGACTGATACTTAACCACGCA
AGTGTTTCGTACAGTGAACGTAAAATCAGAGCGATGGAAACAGAAGCAAG
GGGAATGTTTGGAGCTAACAAAGCGTTCGTGGCGAGGGACCTAAGTGTAT
TTAATATACCAACTTGCGAAGAGGATGATGATGATTTCGCGTTTAGGAGG
TTTGTCGGTTTTGCTGACTCATTAGAATTCAAGTCGCCCCAAGAAACTCC
ATTCACTCCCGATTTCGTGGTTGACAGAGGTGAAGAGGGGTCGGTACAAG
ATGAAGATTTTGATTCTGATTCACTCAAAGCGGATGATTATTCTGATGAC
CATGATGAAGAGGATACGTCTGTGCTTTTAGATGCTCGTGAACATTCGGC
CGTGACTGAGGAAATAGATATTCATAGCAGTATGTTTCGGGAACCGGAAA
GACAATCCATCTTGACCGTATGA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:75768..77390+

>Gcaud2209.t1 ID=Gcaud2209.t1|Name=Gcaud2209.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1623bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:75768..77390+ (Gracilaria caudata M_176_S67 male)
ATGTTTTCGTACTATGCCCTGCGAGCAACGAGACGGTTGTCATTGAGACA
TCGTGGTTTCTTGCGTTTGCAAAGCGAACAAATCACACCCACTTTGTCGA
GAGTTAGAACGAAGTGTACCTATTTGAGCGAGCCGCTGACGCCTGCAGGG
ACCGGAGGATTTGAACTTACTTTCCTGGGAACCAGTTCCCAAGGTGGTGC
GCGTCGATATCCATCATCATTGGCAGTGCGATTGCGCGGAGCTGCCAGCT
CTGAAGTATGGGTTTTCGATGCGGGAGAAGGCGCCATGGCTCAGCTTCAA
CGTTCCAACATGCGAGTGGGACTGGTTCGCAACATTTTCATATCTCACTT
ACACGGAGATCACCTATACGGTCTTCCTGGGCTGGTCATGTCAATTCTAG
GACGTCGCGAGATATTCAACAAGCAAGGAGACGCAACCCTCAATGTTTAC
GGACCGCAGGGTATTAGAGGGTTTCTACGCATGGCTCTTGGAGTTGCAAG
TTTTCGGATCCCGGGCAAAGGTGCTCTCAGAATTAATGAGTTGATCTGGC
CCGACGAGTTTGGTCCACGTTGTTTGCAGAATAAACACCGAAACGGGAGT
GCGTATTGGAAACATTCCATTAAGAGACTTCCCTTTGAGATGGCTGGTAG
GGATATCATCCCTGAAAGAGACGCCCAAGGGCAATACACATATGAAGTAA
CGGGAGAGGAAAATGGTAACAAGGACAATACGAATTCAAAACGACGATGG
CTTGGCAGCGGGCCTGCAACAGTAGTCGCGGCTCCGGTGCTGCACACTGT
TCCAACATTTGCTTACGGTGTGACCGAGAACGTCGTGAGTCAGCGATTTG
ACAAAGGAAAACTCCTTGAGCTTGGAATCCCAACAGATGGTCGGGAAGAA
GTACGCGTTCTGTTCGAGCAATGGCTGGTGGGGGAAAGAGGAATCTGGCA
AGGTAAAGAGATCCCCATTGAACAAGTTTTACAGAATGGAAGGAGACCGA
GAACACTTTGTATTATAGGAGACACTTATGACGCAGCTGGGGCCGCCCAT
ATTGCTAAGAGCGTTGACGTTTTGGTGCATGAAGCAACGAATATGGCCGC
TGGGACTCATACTGCGAGGAGTCGAGGACATTCTTCCACTGTGGGTGCCA
GCTCTTTTGCCAGAAGAGTTGGCGCAAGACGACTGATACTTAACCACGCA
AGTGTTTCGTACAGTGAACGTAAAATCAGAGCGATGGAAACAGAAGCAAG
GGGAATGTTTGGAGCTAACAAAGCGTTCGTGGCGAGGGACCTAAGTGTAT
TTAATATACCAACTTGCGAAGAGGATGATGATGATTTCGCGTTTAGGAGG
TTTGTCGGTTTTGCTGACTCATTAGAATTCAAGTCGCCCCAAGAAACTCC
ATTCACTCCCGATTTCGTGGTTGACAGAGGTGAAGAGGGGTCGGTACAAG
ATGAAGATTTTGATTCTGATTCACTCAAAGCGGATGATTATTCTGATGAC
CATGATGAAGAGGATACGTCTGTGCTTTTAGATGCTCGTGAACATTCGGC
CGTGACTGAGGAAATAGATATTCATAGCAGTATGTTTCGGGAACCGGAAA
GACAATCCATCTTGACCGTATGA