Gcaud2207.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2207.t1
Unique Name	Gcaud2207.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:72749..74146 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_12681T0
PFAMs	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K03231,ko:K13199
KEGG Pathway	ko03013,ko05134,map03013,map05134
Evalue	6.46e-254
EggNOG OGs	COG5256@1\|root,KOG0052@2759\|Eukaryota,38G33@33154\|Opisthokonta
Description	translation elongation factor activity
COG category	J
BRITE	ko00000,ko00001,ko03012,ko03016,ko03019,ko03041,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2207	Gcaud2207	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 72749..74146 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2207.t1.start1	Gcaud2207.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 72749..72751 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2207.t1.CDS1	Gcaud2207.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 72749..74146 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2207.t1.exon1	Gcaud2207.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 72749..74146 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2207.t1.stop1	Gcaud2207.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 74144..74146 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2207.t1	Gcaud2207.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 72749..74146 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:72749..74146+
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:72749..74146+

mRNA sequence

>Gcaud2207.t1 ID=Gcaud2207.t1|Name=Gcaud2207.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=466bp
MTEGKKHVSIVICGHVDAGKSTTTGRLIFELGGISDREMQKLKDEAKALG
KDSFAFAFYMDKSKEERARGVTIACTTKEFFTESYHYTIIDAPGHRDFIK
NMISGASQADVGLLMVPADGNFITSIAKGDHKAGQVQGQTRQHARLLNLL
GVKQLIVGVNKMDCDVAKYGKDRFDEIRAEVTTMLMKVGWKKDFVAKSVP
VVPISGWEGDNLITKSTNMSWWKGCDVLVGKEKVHIDTLADALEKMVKIP
PRPTDKPLRMPVSGVYKIKGVGDVITGRVEQGVLKPEDQILFLPTHTTST
PCSGKVFSVEMHHKGVKEAGPGDNVGLNVKGLEKLNMPHVGDVMILQKDT
SLKRTGNFTAQVQILDHPGQLKVGYAPVAFVRTGRSACKIKSINWKMGKE
TGGAKVEHPEYIKANEVAEIVFEPQQPFVVEGFKACEGLGRVAIMEGNTV
VMLGKAIKVEFYTEK*

spliced messenger RNA

>Gcaud2207.t1 ID=Gcaud2207.t1|Name=Gcaud2207.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:72749..74146+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGAGGGAAAGAAGCACGTCTCCATCGTCATTTGTGGCCATGTCGA
TGCCGGTAAATCTACCACTACTGGCCGACTCATCTTCGAGCTTGGCGGCA
TTTCCGATCGTGAAATGCAGAAGCTCAAGGATGAGGCAAAGGCTCTCGGA
AAGGATTCTTTTGCATTCGCTTTCTACATGGACAAGTCCAAGGAGGAGCG
TGCCCGTGGTGTCACAATCGCCTGTACTACCAAGGAGTTTTTCACAGAGT
CCTACCACTACACCATCATTGATGCCCCAGGCCATCGTGATTTCATCAAG
AACATGATCAGTGGTGCCTCGCAGGCTGATGTCGGTCTCCTTATGGTTCC
CGCCGACGGTAACTTCATCACTTCCATTGCGAAGGGTGACCACAAGGCCG
GCCAAGTACAAGGTCAGACTCGCCAACATGCCCGTTTGCTTAACCTCTTG
GGTGTCAAGCAGCTCATCGTCGGTGTCAACAAGATGGATTGTGATGTCGC
CAAGTATGGCAAGGACAGATTCGATGAGATTCGCGCTGAGGTCACCACTA
TGCTCATGAAGGTCGGATGGAAGAAGGACTTTGTTGCCAAGAGTGTTCCA
GTTGTTCCGATTTCTGGATGGGAGGGTGACAACCTCATCACTAAGTCTAC
CAATATGAGCTGGTGGAAGGGCTGTGACGTGCTTGTCGGAAAGGAGAAGG
TCCACATTGACACTCTTGCCGATGCTCTTGAGAAGATGGTTAAGATCCCT
CCCCGCCCGACTGACAAGCCGCTTCGCATGCCCGTGTCTGGAGTCTACAA
GATTAAGGGTGTCGGTGATGTCATCACTGGCCGCGTGGAGCAAGGTGTTC
TCAAGCCTGAGGATCAGATTCTCTTCCTCCCGACCCACACTACCTCCACC
CCGTGTTCTGGTAAGGTGTTCTCTGTTGAAATGCATCACAAGGGTGTGAA
GGAAGCAGGACCAGGTGACAACGTCGGTCTCAACGTCAAGGGTCTTGAGA
AGTTGAACATGCCTCACGTCGGTGATGTCATGATTCTCCAAAAGGACACC
TCCCTGAAGCGTACAGGGAACTTCACTGCTCAAGTTCAGATTCTGGATCA
TCCTGGCCAGCTTAAGGTTGGATATGCCCCAGTTGCGTTCGTCCGCACTG
GAAGGTCTGCCTGCAAGATCAAGTCGATCAATTGGAAGATGGGTAAGGAG
ACTGGTGGTGCCAAGGTCGAGCACCCAGAATACATCAAGGCTAATGAAGT
TGCTGAGATTGTCTTTGAGCCGCAACAGCCATTCGTTGTTGAGGGCTTCA
AGGCCTGCGAGGGTCTTGGCCGTGTAGCTATTATGGAAGGAAACACTGTC
GTCATGCTTGGAAAAGCCATCAAGGTCGAGTTCTACACGGAGAAGTAG

protein sequence of Gcaud2207.t1

>Gcaud2207.t1 ID=Gcaud2207.t1|Name=Gcaud2207.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=466bp
MTEGKKHVSIVICGHVDAGKSTTTGRLIFELGGISDREMQKLKDEAKALG
KDSFAFAFYMDKSKEERARGVTIACTTKEFFTESYHYTIIDAPGHRDFIK
NMISGASQADVGLLMVPADGNFITSIAKGDHKAGQVQGQTRQHARLLNLL
GVKQLIVGVNKMDCDVAKYGKDRFDEIRAEVTTMLMKVGWKKDFVAKSVP
VVPISGWEGDNLITKSTNMSWWKGCDVLVGKEKVHIDTLADALEKMVKIP
PRPTDKPLRMPVSGVYKIKGVGDVITGRVEQGVLKPEDQILFLPTHTTST
PCSGKVFSVEMHHKGVKEAGPGDNVGLNVKGLEKLNMPHVGDVMILQKDT
SLKRTGNFTAQVQILDHPGQLKVGYAPVAFVRTGRSACKIKSINWKMGKE
TGGAKVEHPEYIKANEVAEIVFEPQQPFVVEGFKACEGLGRVAIMEGNTV
VMLGKAIKVEFYTEK*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:72749..74146+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2207.t1 ID=Gcaud2207.t1|Name=Gcaud2207.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:72749..74146+ (Gracilaria caudata M_176_S67 male)
ATGACTGAGGGAAAGAAGCACGTCTCCATCGTCATTTGTGGCCATGTCGA
TGCCGGTAAATCTACCACTACTGGCCGACTCATCTTCGAGCTTGGCGGCA
TTTCCGATCGTGAAATGCAGAAGCTCAAGGATGAGGCAAAGGCTCTCGGA
AAGGATTCTTTTGCATTCGCTTTCTACATGGACAAGTCCAAGGAGGAGCG
TGCCCGTGGTGTCACAATCGCCTGTACTACCAAGGAGTTTTTCACAGAGT
CCTACCACTACACCATCATTGATGCCCCAGGCCATCGTGATTTCATCAAG
AACATGATCAGTGGTGCCTCGCAGGCTGATGTCGGTCTCCTTATGGTTCC
CGCCGACGGTAACTTCATCACTTCCATTGCGAAGGGTGACCACAAGGCCG
GCCAAGTACAAGGTCAGACTCGCCAACATGCCCGTTTGCTTAACCTCTTG
GGTGTCAAGCAGCTCATCGTCGGTGTCAACAAGATGGATTGTGATGTCGC
CAAGTATGGCAAGGACAGATTCGATGAGATTCGCGCTGAGGTCACCACTA
TGCTCATGAAGGTCGGATGGAAGAAGGACTTTGTTGCCAAGAGTGTTCCA
GTTGTTCCGATTTCTGGATGGGAGGGTGACAACCTCATCACTAAGTCTAC
CAATATGAGCTGGTGGAAGGGCTGTGACGTGCTTGTCGGAAAGGAGAAGG
TCCACATTGACACTCTTGCCGATGCTCTTGAGAAGATGGTTAAGATCCCT
CCCCGCCCGACTGACAAGCCGCTTCGCATGCCCGTGTCTGGAGTCTACAA
GATTAAGGGTGTCGGTGATGTCATCACTGGCCGCGTGGAGCAAGGTGTTC
TCAAGCCTGAGGATCAGATTCTCTTCCTCCCGACCCACACTACCTCCACC
CCGTGTTCTGGTAAGGTGTTCTCTGTTGAAATGCATCACAAGGGTGTGAA
GGAAGCAGGACCAGGTGACAACGTCGGTCTCAACGTCAAGGGTCTTGAGA
AGTTGAACATGCCTCACGTCGGTGATGTCATGATTCTCCAAAAGGACACC
TCCCTGAAGCGTACAGGGAACTTCACTGCTCAAGTTCAGATTCTGGATCA
TCCTGGCCAGCTTAAGGTTGGATATGCCCCAGTTGCGTTCGTCCGCACTG
GAAGGTCTGCCTGCAAGATCAAGTCGATCAATTGGAAGATGGGTAAGGAG
ACTGGTGGTGCCAAGGTCGAGCACCCAGAATACATCAAGGCTAATGAAGT
TGCTGAGATTGTCTTTGAGCCGCAACAGCCATTCGTTGTTGAGGGCTTCA
AGGCCTGCGAGGGTCTTGGCCGTGTAGCTATTATGGAAGGAAACACTGTC
GTCATGCTTGGAAAAGCCATCAAGGTCGAGTTCTACACGGAGAAGTAG

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:72749..74146+

>Gcaud2207.t1 ID=Gcaud2207.t1|Name=Gcaud2207.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1398bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:72749..74146+ (Gracilaria caudata M_176_S67 male)
ATGACTGAGGGAAAGAAGCACGTCTCCATCGTCATTTGTGGCCATGTCGA
TGCCGGTAAATCTACCACTACTGGCCGACTCATCTTCGAGCTTGGCGGCA
TTTCCGATCGTGAAATGCAGAAGCTCAAGGATGAGGCAAAGGCTCTCGGA
AAGGATTCTTTTGCATTCGCTTTCTACATGGACAAGTCCAAGGAGGAGCG
TGCCCGTGGTGTCACAATCGCCTGTACTACCAAGGAGTTTTTCACAGAGT
CCTACCACTACACCATCATTGATGCCCCAGGCCATCGTGATTTCATCAAG
AACATGATCAGTGGTGCCTCGCAGGCTGATGTCGGTCTCCTTATGGTTCC
CGCCGACGGTAACTTCATCACTTCCATTGCGAAGGGTGACCACAAGGCCG
GCCAAGTACAAGGTCAGACTCGCCAACATGCCCGTTTGCTTAACCTCTTG
GGTGTCAAGCAGCTCATCGTCGGTGTCAACAAGATGGATTGTGATGTCGC
CAAGTATGGCAAGGACAGATTCGATGAGATTCGCGCTGAGGTCACCACTA
TGCTCATGAAGGTCGGATGGAAGAAGGACTTTGTTGCCAAGAGTGTTCCA
GTTGTTCCGATTTCTGGATGGGAGGGTGACAACCTCATCACTAAGTCTAC
CAATATGAGCTGGTGGAAGGGCTGTGACGTGCTTGTCGGAAAGGAGAAGG
TCCACATTGACACTCTTGCCGATGCTCTTGAGAAGATGGTTAAGATCCCT
CCCCGCCCGACTGACAAGCCGCTTCGCATGCCCGTGTCTGGAGTCTACAA
GATTAAGGGTGTCGGTGATGTCATCACTGGCCGCGTGGAGCAAGGTGTTC
TCAAGCCTGAGGATCAGATTCTCTTCCTCCCGACCCACACTACCTCCACC
CCGTGTTCTGGTAAGGTGTTCTCTGTTGAAATGCATCACAAGGGTGTGAA
GGAAGCAGGACCAGGTGACAACGTCGGTCTCAACGTCAAGGGTCTTGAGA
AGTTGAACATGCCTCACGTCGGTGATGTCATGATTCTCCAAAAGGACACC
TCCCTGAAGCGTACAGGGAACTTCACTGCTCAAGTTCAGATTCTGGATCA
TCCTGGCCAGCTTAAGGTTGGATATGCCCCAGTTGCGTTCGTCCGCACTG
GAAGGTCTGCCTGCAAGATCAAGTCGATCAATTGGAAGATGGGTAAGGAG
ACTGGTGGTGCCAAGGTCGAGCACCCAGAATACATCAAGGCTAATGAAGT
TGCTGAGATTGTCTTTGAGCCGCAACAGCCATTCGTTGTTGAGGGCTTCA
AGGCCTGCGAGGGTCTTGGCCGTGTAGCTATTATGGAAGGAAACACTGTC
GTCATGCTTGGAAAAGCCATCAAGGTCGAGTTCTACACGGAGAAGTAG