Gcaud2205.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2205.t1
Unique Name	Gcaud2205.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	148

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:70357..70800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	264402.Cagra.0228s0003.1.p
PFAMs	Ribosomal_S11
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02955
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
GOs	GO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070013,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue	2.45e-81
EggNOG OGs	COG0100@1\|root,KOG0407@2759\|Eukaryota,37SRM@33090\|Viridiplantae,3GCV6@35493\|Streptophyta
Description	Belongs to the universal ribosomal protein uS11 family
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2205	Gcaud2205	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 70357..70800 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2205.t1.start1	Gcaud2205.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 70357..70359 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2205.t1.CDS1	Gcaud2205.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 70357..70800 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2205.t1.exon1	Gcaud2205.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 70357..70800 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2205.t1.stop1	Gcaud2205.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 70798..70800 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2205.t1	Gcaud2205.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 70357..70800 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:70357..70800+
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:70357..70800+

mRNA sequence

>Gcaud2205.t1 ID=Gcaud2205.t1|Name=Gcaud2205.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=148bp
MAKKGRTDEPLKLGPTLRDGENCFGVCHLFASFNDTFIHVTDLSGRETLV
RRTGGMEVKADRDESSPYAAMMAAQKVAERLKQLGITAIHIKLRATGGNT
TKTPGPGAQSAMRALARSGLKIGRIEDVTPIPTDSTRKKGGRRGRRL*

spliced messenger RNA

>Gcaud2205.t1 ID=Gcaud2205.t1|Name=Gcaud2205.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=444bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:70357..70800+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAGAAGGGTCGTACTGATGAGCCGCTGAAGCTCGGACCGACGCT
GCGCGATGGAGAGAACTGTTTTGGCGTGTGCCATCTTTTTGCTTCCTTTA
ATGACACGTTCATCCATGTCACCGATTTGTCTGGAAGAGAAACACTGGTC
CGTCGCACGGGAGGTATGGAAGTGAAGGCCGATCGCGATGAGAGCTCTCC
GTACGCCGCTATGATGGCGGCTCAGAAGGTTGCTGAGAGACTGAAGCAGC
TCGGAATCACGGCTATTCACATTAAGCTTCGTGCTACTGGAGGAAACACT
ACGAAGACGCCAGGTCCTGGCGCTCAATCTGCGATGCGCGCTCTCGCCCG
TTCTGGGCTGAAGATTGGTCGTATCGAAGACGTGACTCCGATTCCTACCG
ATTCGACAAGGAAGAAGGGTGGTCGCCGCGGTCGTCGTCTCTAA

protein sequence of Gcaud2205.t1

>Gcaud2205.t1 ID=Gcaud2205.t1|Name=Gcaud2205.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=148bp
MAKKGRTDEPLKLGPTLRDGENCFGVCHLFASFNDTFIHVTDLSGRETLV
RRTGGMEVKADRDESSPYAAMMAAQKVAERLKQLGITAIHIKLRATGGNT
TKTPGPGAQSAMRALARSGLKIGRIEDVTPIPTDSTRKKGGRRGRRL*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:70357..70800+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2205.t1 ID=Gcaud2205.t1|Name=Gcaud2205.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=444bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:70357..70800+ (Gracilaria caudata M_176_S67 male)
ATGGCGAAGAAGGGTCGTACTGATGAGCCGCTGAAGCTCGGACCGACGCT
GCGCGATGGAGAGAACTGTTTTGGCGTGTGCCATCTTTTTGCTTCCTTTA
ATGACACGTTCATCCATGTCACCGATTTGTCTGGAAGAGAAACACTGGTC
CGTCGCACGGGAGGTATGGAAGTGAAGGCCGATCGCGATGAGAGCTCTCC
GTACGCCGCTATGATGGCGGCTCAGAAGGTTGCTGAGAGACTGAAGCAGC
TCGGAATCACGGCTATTCACATTAAGCTTCGTGCTACTGGAGGAAACACT
ACGAAGACGCCAGGTCCTGGCGCTCAATCTGCGATGCGCGCTCTCGCCCG
TTCTGGGCTGAAGATTGGTCGTATCGAAGACGTGACTCCGATTCCTACCG
ATTCGACAAGGAAGAAGGGTGGTCGCCGCGGTCGTCGTCTCTAA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:70357..70800+

>Gcaud2205.t1 ID=Gcaud2205.t1|Name=Gcaud2205.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=444bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:70357..70800+ (Gracilaria caudata M_176_S67 male)
ATGGCGAAGAAGGGTCGTACTGATGAGCCGCTGAAGCTCGGACCGACGCT
GCGCGATGGAGAGAACTGTTTTGGCGTGTGCCATCTTTTTGCTTCCTTTA
ATGACACGTTCATCCATGTCACCGATTTGTCTGGAAGAGAAACACTGGTC
CGTCGCACGGGAGGTATGGAAGTGAAGGCCGATCGCGATGAGAGCTCTCC
GTACGCCGCTATGATGGCGGCTCAGAAGGTTGCTGAGAGACTGAAGCAGC
TCGGAATCACGGCTATTCACATTAAGCTTCGTGCTACTGGAGGAAACACT
ACGAAGACGCCAGGTCCTGGCGCTCAATCTGCGATGCGCGCTCTCGCCCG
TTCTGGGCTGAAGATTGGTCGTATCGAAGACGTGACTCCGATTCCTACCG
ATTCGACAAGGAAGAAGGGTGGTCGCCGCGGTCGTCGTCTCTAA